Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:31:50 (15470): wrapper (7.7.26015): starting
21:31:50 (15470): wrapper: running run_atlas (--nthreads 8)
[2026-03-16 21:31:50] Arguments: --nthreads 8
[2026-03-16 21:31:50] Threads: 8
[2026-03-16 21:31:50] Checking for CVMFS
[2026-03-16 21:31:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-16 21:31:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-16 21:31:52] Running cvmfs_config stat atlas.cern.ch
[2026-03-16 21:31:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-16 21:31:53] 2.11.2.0 10131 130939 145544 157351 2 409 23234854 25165825 4535 130560 152 39192668 99.813 28109362 1015 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-16 21:31:53] CVMFS is ok
[2026-03-16 21:31:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 21:31:53] Checking for apptainer binary...
[2026-03-16 21:31:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-16 21:31:53] Running /usr/bin/apptainer --version
[2026-03-16 21:31:53] apptainer version 1.3.2-1.el7
[2026-03-16 21:31:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 21:32:07] cg-vwn460.simple-grid.lan
[2026-03-16 21:32:07] apptainer works
[2026-03-16 21:32:07] Set ATHENA_PROC_NUMBER=8
[2026-03-16 21:32:07] Set ATHENA_CORE_NUMBER=8
[2026-03-16 21:32:07] Starting ATLAS job with PandaID=7056907549
[2026-03-16 21:32:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 05:16:02]  *** The last 200 lines of the pilot log: ***
[2026-03-17 05:16:02] 2026-03-17 04:14:56,895 | INFO     | total number of processed events: 400 (read)
[2026-03-17 05:16:02] 2026-03-17 04:14:56,896 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7056907549/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 05:16:02] 2026-03-17 04:14:56,897 | INFO     | extracted standard info from prmon json
[2026-03-17 05:16:02] 2026-03-17 04:14:56,897 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 05:16:02] 2026-03-17 04:14:56,897 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 05:16:02] 2026-03-17 04:14:56,897 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 05:16:02] 2026-03-17 04:14:56,898 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 05:16:02] 2026-03-17 04:14:56,905 | INFO     | fitting pss+swap vs Time
[2026-03-17 05:16:02] 2026-03-17 04:14:56,906 | INFO     | sum of square deviations: 27694837408.0
[2026-03-17 05:16:02] 2026-03-17 04:14:56,912 | INFO     | sum of deviations: -101443275110.00003
[2026-03-17 05:16:02] 2026-03-17 04:14:56,912 | INFO     | mean x: 1773707270.0
[2026-03-17 05:16:02] 2026-03-17 04:14:56,912 | INFO     | mean y: 2689674.749440716
[2026-03-17 05:16:02] 2026-03-17 04:14:56,915 | INFO     | intersect: 6499592758.3271
[2026-03-17 05:16:02] 2026-03-17 04:14:56,916 | INFO     | chi2: 6.027288333359739
[2026-03-17 05:16:02] 2026-03-17 04:14:56,917 | INFO     | sum of square deviations: 26775834130.5
[2026-03-17 05:16:02] 2026-03-17 04:14:56,922 | INFO     | sum of deviations: -59999272521.49997
[2026-03-17 05:16:02] 2026-03-17 04:14:56,923 | INFO     | mean x: 1773707117.5
[2026-03-17 05:16:02] 2026-03-17 04:14:56,923 | INFO     | mean y: 2696507.4457013574
[2026-03-17 05:16:02] 2026-03-17 04:14:56,923 | INFO     | intersect: 3977218316.832911
[2026-03-17 05:16:02] 2026-03-17 04:14:56,923 | INFO     | chi2: 5.261571890585031
[2026-03-17 05:16:02] 2026-03-17 04:14:56,924 | INFO     | current chi2=5.261571890585031 (change=12.704161480655133 %)
[2026-03-17 05:16:02] 2026-03-17 04:14:56,924 | INFO     | right removable region: 441
[2026-03-17 05:16:02] 2026-03-17 04:14:56,924 | INFO     | sum of square deviations: 26775834130.5
[2026-03-17 05:16:02] 2026-03-17 04:14:56,930 | INFO     | sum of deviations: -261032760288.5
[2026-03-17 05:16:02] 2026-03-17 04:14:56,930 | INFO     | mean x: 1773707422.5
[2026-03-17 05:16:02] 2026-03-17 04:14:56,930 | INFO     | mean y: 2716141.242081448
[2026-03-17 05:16:02] 2026-03-17 04:14:56,930 | INFO     | intersect: 17294268747.328156
[2026-03-17 05:16:02] 2026-03-17 04:14:56,931 | INFO     | chi2: 1.9723966110207152
[2026-03-17 05:16:02] 2026-03-17 04:14:56,931 | INFO     | current chi2=1.9723966110207152 (change=67.27555574031648 %)
[2026-03-17 05:16:02] 2026-03-17 04:14:56,932 | INFO     | sum of square deviations: 25877389378.0
[2026-03-17 05:16:02] 2026-03-17 04:14:56,940 | INFO     | sum of deviations: -310821315949.00006
[2026-03-17 05:16:02] 2026-03-17 04:14:56,940 | INFO     | mean x: 1773707575.0
[2026-03-17 05:16:02] 2026-03-17 04:14:56,940 | INFO     | mean y: 2724559.0961098396
[2026-03-17 05:16:02] 2026-03-17 04:14:56,941 | INFO     | intersect: 21307274045.023384
[2026-03-17 05:16:02] 2026-03-17 04:14:56,941 | INFO     | chi2: 1.3235959022390955
[2026-03-17 05:16:02] 2026-03-17 04:14:56,941 | INFO     | current chi2=1.3235959022390955 (change=32.894028774763775 %)
[2026-03-17 05:16:02] 2026-03-17 04:14:56,942 | INFO     | sum of square deviations: 24999270588.0
[2026-03-17 05:16:02] 2026-03-17 04:14:56,947 | INFO     | sum of deviations: -317381538806.00006
[2026-03-17 05:16:02] 2026-03-17 04:14:56,947 | INFO     | mean x: 1773707727.5
[2026-03-17 05:16:02] 2026-03-17 04:14:56,948 | INFO     | mean y: 2725691.421296296
[2026-03-17 05:16:02] 2026-03-17 04:14:56,948 | INFO     | intersect: 22521066215.174957
[2026-03-17 05:16:02] 2026-03-17 04:14:56,948 | INFO     | chi2: 1.275308766832317
[2026-03-17 05:16:02] 2026-03-17 04:14:56,948 | INFO     | current chi2=1.275308766832317 (change=3.648178067421653 %)
[2026-03-17 05:16:02] 2026-03-17 04:14:56,948 | INFO     | left removable region: 30
[2026-03-17 05:16:02] 2026-03-17 04:14:56,949 | INFO     | sum of square deviations: 21527882710.0
[2026-03-17 05:16:02] 2026-03-17 04:14:56,954 | INFO     | sum of deviations: -269771045028.0
[2026-03-17 05:16:02] 2026-03-17 04:14:56,954 | INFO     | mean x: 1773708002.0
[2026-03-17 05:16:02] 2026-03-17 04:14:56,954 | INFO     | mean y: 2733196.8394160583
[2026-03-17 05:16:02] 2026-03-17 04:14:56,954 | INFO     | intersect: 22229492220.001427
[2026-03-17 05:16:02] 2026-03-17 04:14:56,955 | INFO     | chi2: 0.44904543843852696
[2026-03-17 05:16:02] 2026-03-17 04:14:56,955 | INFO     | current memory leak: -12.53 B/s (using 411 data points, chi2=0.45)
[2026-03-17 05:16:02] 2026-03-17 04:14:56,956 | INFO     | could have reported an average CPU frequency of 2250 MHz (19 samples)
[2026-03-17 05:16:02] 2026-03-17 04:14:56,956 | INFO     | ..............................
[2026-03-17 05:16:02] 2026-03-17 04:14:56,956 | INFO     | . Timing measurements:
[2026-03-17 05:16:02] 2026-03-17 04:14:56,956 | INFO     | . get job = 0 s
[2026-03-17 05:16:02] 2026-03-17 04:14:56,956 | INFO     | . initial setup = 95 s
[2026-03-17 05:16:02] 2026-03-17 04:14:56,956 | INFO     | . payload setup = 132 s
[2026-03-17 05:16:02] 2026-03-17 04:14:56,956 | INFO     | . stage-in = 0 s
[2026-03-17 05:16:02] 2026-03-17 04:14:56,957 | INFO     | . payload execution = 27313 s
[2026-03-17 05:16:02] 2026-03-17 04:14:56,957 | INFO     | . stage-out = 1 s
[2026-03-17 05:16:02] 2026-03-17 04:14:56,957 | INFO     | . log creation = 0 s
[2026-03-17 05:16:02] 2026-03-17 04:14:56,957 | INFO     | ..............................
[2026-03-17 05:16:02] 2026-03-17 04:14:57,079 | INFO     | 
[2026-03-17 05:16:02] 2026-03-17 04:14:57,079 | INFO     | job summary report
[2026-03-17 05:16:02] 2026-03-17 04:14:57,079 | INFO     | --------------------------------------------------
[2026-03-17 05:16:02] 2026-03-17 04:14:57,079 | INFO     | PanDA job id: 7056907549
[2026-03-17 05:16:02] 2026-03-17 04:14:57,079 | INFO     | task id: 49176860
[2026-03-17 05:16:02] 2026-03-17 04:14:57,079 | INFO     | errors: (none)
[2026-03-17 05:16:02] 2026-03-17 04:14:57,080 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 05:16:02] 2026-03-17 04:14:57,080 | INFO     | pilot state: finished 
[2026-03-17 05:16:02] 2026-03-17 04:14:57,080 | INFO     | transexitcode: 0
[2026-03-17 05:16:02] 2026-03-17 04:14:57,080 | INFO     | exeerrorcode: 0
[2026-03-17 05:16:02] 2026-03-17 04:14:57,080 | INFO     | exeerrordiag: 
[2026-03-17 05:16:02] 2026-03-17 04:14:57,080 | INFO     | exitcode: 0
[2026-03-17 05:16:02] 2026-03-17 04:14:57,080 | INFO     | exitmsg: OK
[2026-03-17 05:16:02] 2026-03-17 04:14:57,080 | INFO     | cpuconsumptiontime: 108213 s
[2026-03-17 05:16:02] 2026-03-17 04:14:57,080 | INFO     | nevents: 400
[2026-03-17 05:16:02] 2026-03-17 04:14:57,080 | INFO     | neventsw: 0
[2026-03-17 05:16:02] 2026-03-17 04:14:57,080 | INFO     | pid: 24060
[2026-03-17 05:16:02] 2026-03-17 04:14:57,080 | INFO     | pgrp: 24060
[2026-03-17 05:16:02] 2026-03-17 04:14:57,081 | INFO     | corecount: 8
[2026-03-17 05:16:02] 2026-03-17 04:14:57,081 | INFO     | event service: False
[2026-03-17 05:16:02] 2026-03-17 04:14:57,081 | INFO     | sizes: {0: 2279230, 1: 2235035, 2: 2280376, 12: 2280376, 27450: 2317026, 27454: 2326024, 27456: 2326208, 27459: 2326402}
[2026-03-17 05:16:02] 2026-03-17 04:14:57,081 | INFO     | --------------------------------------------------
[2026-03-17 05:16:02] 2026-03-17 04:14:57,081 | INFO     | 
[2026-03-17 05:16:02] 2026-03-17 04:14:57,081 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-03-17 05:16:02] 2026-03-17 04:14:57,582 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,583 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,583 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,583 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,583 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,583 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,583 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,583 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,584 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,584 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,584 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,584 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,584 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,584 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,584 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,584 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,585 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,585 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 05:16:02] 2026-03-17 04:14:57,585 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,585 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 05:16:02] 2026-03-17 04:14:57,585 | INFO     | job 7056907549 has completed (purged errors)
[2026-03-17 05:16:02] 2026-03-17 04:14:57,585 | INFO     | overall cleanup function is called
[2026-03-17 05:16:02] 2026-03-17 04:14:58,594 | INFO     | --- collectZombieJob: --- 10, [24060]
[2026-03-17 05:16:02] 2026-03-17 04:14:58,594 | INFO     | zombie collector waiting for pid 24060
[2026-03-17 05:16:02] 2026-03-17 04:14:58,594 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 05:16:02] 2026-03-17 04:14:58,594 | INFO     | collected zombie processes
[2026-03-17 05:16:02] 2026-03-17 04:14:58,594 | INFO     | will attempt to kill all subprocesses of pid=24060
[2026-03-17 05:16:02] 2026-03-17 04:14:58,721 | INFO     | process IDs to be killed: [24060] (in reverse order)
[2026-03-17 05:16:02] 2026-03-17 04:14:59,385 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 05:16:02] 2026-03-17 04:14:59,385 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 05:16:02] 2026-03-17 04:14:59,388 | INFO     | did not find any defunct processes belonging to 24060
[2026-03-17 05:16:02] 2026-03-17 04:14:59,391 | INFO     | did not find any defunct processes belonging to 24060
[2026-03-17 05:16:02] 2026-03-17 04:14:59,391 | INFO     | ready for new job
[2026-03-17 05:16:02] 2026-03-17 04:14:59,391 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 05:16:02] 2026-03-17 04:14:59,394 | INFO     | **************************************
[2026-03-17 05:16:02] 2026-03-17 04:14:59,394 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 05:16:02] 2026-03-17 04:14:59,394 | INFO     | **************************************
[2026-03-17 05:16:02] 2026-03-17 04:14:59,394 | INFO     | 
[2026-03-17 05:16:02] 2026-03-17 04:14:59,395 | INFO     | pilot is running in a VM
[2026-03-17 05:16:02] 2026-03-17 04:14:59,395 | INFO     | architecture information:
[2026-03-17 05:16:02] 2026-03-17 04:14:59,404 | INFO     | executing command: cat /etc/os-release
[2026-03-17 05:16:02] 2026-03-17 04:14:59,726 | INFO     | cat /etc/os-release:
[2026-03-17 05:16:02] NAME="CentOS Linux"
[2026-03-17 05:16:02] VERSION="7 (Core)"
[2026-03-17 05:16:02] ID="centos"
[2026-03-17 05:16:02] ID_LIKE="rhel fedora"
[2026-03-17 05:16:02] VERSION_ID="7"
[2026-03-17 05:16:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 05:16:02] ANSI_COLOR="0;31"
[2026-03-17 05:16:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 05:16:02] HOME_URL="https://www.centos.org/"
[2026-03-17 05:16:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 05:16:02] 
[2026-03-17 05:16:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 05:16:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 05:16:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 05:16:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 05:16:02] 
[2026-03-17 05:16:02] 2026-03-17 04:14:59,727 | INFO     | **************************************
[2026-03-17 05:16:02] 2026-03-17 04:15:00,230 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-03-17 05:16:02] 2026-03-17 04:15:00,472 | INFO     | sufficient remaining disk space (495696478208 B)
[2026-03-17 05:16:02] 2026-03-17 04:15:00,473 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 05:16:02] 2026-03-17 04:15:00,473 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 05:16:02] 2026-03-17 04:15:00,473 | INFO     | update_server=False
[2026-03-17 05:16:02] 2026-03-17 04:15:00,473 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 05:16:02] 2026-03-17 04:15:00,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 05:16:02] 2026-03-17 04:15:00,645 | INFO     | all payload control threads have been joined
[2026-03-17 05:16:02] 2026-03-17 04:15:00,710 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-17 05:16:02] 2026-03-17 04:15:00,710 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-17 05:16:02] 2026-03-17 04:15:00,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 05:16:02] 2026-03-17 04:15:00,710 | INFO     | will abort loop
[2026-03-17 05:16:02] 2026-03-17 04:15:01,046 | INFO     | all job control threads have been joined
[2026-03-17 05:16:02] 2026-03-17 04:15:01,356 | INFO     | all data control threads have been joined
[2026-03-17 05:16:02] 2026-03-17 04:15:01,479 | INFO     | [job] retrieve thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:01,628 | INFO     | [job] validate thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:01,641 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:01,651 | INFO     | [payload] control thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:01,716 | INFO     | [job] job monitor thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:01,722 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:01,834 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 05:16:02] 2026-03-17 04:15:01,853 | INFO     | [payload] failed_post thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:01,974 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:02,053 | INFO     | [job] control thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:02,061 | INFO     | [payload] validate_post thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:02,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 05:16:02] 2026-03-17 04:15:02,165 | INFO     | [data] copytool_in thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:02,243 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:02,362 | INFO     | [data] control thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:03,102 | INFO     | [job] queue monitor thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:03,841 | INFO     | [data] copytool_out thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:04,483 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 05:16:02] 2026-03-17 04:15:29,019 | INFO     | PID=19571 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-17 05:16:02] 2026-03-17 04:15:29,019 | INFO     | .. there are 9 such processes running
[2026-03-17 05:16:02] 2026-03-17 04:15:29,020 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 05:16:02] 2026-03-17 04:15:29,020 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 05:16:02] 2026-03-17 04:15:29,020 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 05:16:02] 2026-03-17 04:15:52,271 | INFO     | [monitor] cgroup control has ended
[2026-03-17 05:16:02] 2026-03-17 04:15:53,018 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139809367422784)>', '<ExcThread(monitor, started 139808919754496)>']
[2026-03-17 05:16:02] 2026-03-17 04:15:53,164 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 05:16:02] 2026-03-17 04:15:53,165 | INFO     | [monitor] control thread has ended
[2026-03-17 05:16:02] 2026-03-17 04:15:58,044 | INFO     | all workflow threads have been joined
[2026-03-17 05:16:02] 2026-03-17 04:15:58,044 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 05:16:02] 2026-03-17 04:15:58,044 | INFO     | traces error code: 0
[2026-03-17 05:16:02] 2026-03-17 04:15:58,044 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 05:16:02] 2026-03-17 04:15:58,457 [wrapper] ==== pilot stdout END ====
[2026-03-17 05:16:02] 2026-03-17 04:15:58,545 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 05:16:02] 2026-03-17 04:15:58,643 [wrapper] pilotpid: 19571
[2026-03-17 05:16:02] 2026-03-17 04:15:58,733 [wrapper] Pilot exit status: 0
[2026-03-17 05:16:02] 2026-03-17 04:15:59,035 [wrapper] pandaids: 7056907549
[2026-03-17 05:16:02] 2026-03-17 04:15:59,911 [wrapper] cleanup supervisor_pilot 17960 19572
[2026-03-17 05:16:02] 2026-03-17 04:15:59,956 [wrapper] Test setup, not cleaning
[2026-03-17 05:16:02] 2026-03-17 04:16:00,037 [wrapper] apfmon messages muted
[2026-03-17 05:16:02] 2026-03-17 04:16:00,120 [wrapper] ==== wrapper stdout END ====
[2026-03-17 05:16:02] 2026-03-17 04:16:00,193 [wrapper] ==== wrapper stderr END ====
[2026-03-17 05:16:02]  *** Error codes and diagnostics ***
[2026-03-17 05:16:02]     "exeErrorCode": 0,
[2026-03-17 05:16:02]     "exeErrorDiag": "",
[2026-03-17 05:16:02]     "pilotErrorCode": 0,
[2026-03-17 05:16:02]     "pilotErrorDiag": "",
[2026-03-17 05:16:02]  *** Listing of results directory ***
[2026-03-17 05:16:02] total 432456
[2026-03-17 05:16:02] -rwx------. 1 boinc boinc     36322 Mar 16 14:14 runpilot2-wrapper.sh
[2026-03-17 05:16:02] -rw-r--r--. 1 boinc boinc    585013 Mar 16 14:19 pilot3.tar.gz
[2026-03-17 05:16:02] -rw-r--r--. 1 boinc boinc      5111 Mar 16 14:25 queuedata.json
[2026-03-17 05:16:02] -rw-r--r--. 1 boinc boinc       100 Mar 16 21:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 05:16:02] -rwxr-xr-x. 1 boinc boinc      7986 Mar 16 21:31 run_atlas
[2026-03-17 05:16:02] -rw-r--r--. 1 boinc boinc       105 Mar 16 21:31 job.xml
[2026-03-17 05:16:02] -rw-r--r--. 1 boinc boinc      6391 Mar 16 21:31 init_data.xml
[2026-03-17 05:16:02] -rw-r--r--. 2 boinc boinc 225704395 Mar 16 21:31 EVNT.49135504._000006.pool.root.1
[2026-03-17 05:16:02] -rw-r--r--. 2 boinc boinc     15845 Mar 16 21:31 start_atlas.sh
[2026-03-17 05:16:02] drwxrwx--x. 2 boinc boinc        68 Mar 16 21:31 shared
[2026-03-17 05:16:02] -rw-r--r--. 2 boinc boinc    597538 Mar 16 21:31 input.tar.gz
[2026-03-17 05:16:02] -rw-r--r--. 1 boinc boinc         0 Mar 16 21:31 boinc_lockfile
[2026-03-17 05:16:02] -rw-r--r--. 1 boinc boinc      2625 Mar 16 21:32 pandaJob.out
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc       413 Mar 16 21:36 workernode_map.json
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc   1006429 Mar 16 21:37 agis_schedconf.cvmfs.json
[2026-03-17 05:16:02] drwx------. 5 boinc boinc      4096 Mar 16 21:37 pilot3
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc 204270435 Mar 17 05:13 HITS.49176860._000148.pool.root.1
[2026-03-17 05:16:02] -rw-r--r--. 1 boinc boinc       532 Mar 17 05:13 boinc_task_state.xml
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc      1028 Mar 17 05:14 memory_monitor_summary.json
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc   1511579 Mar 17 05:14 agis_ddmendpoints.agis.ALL.json
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc    655715 Mar 17 05:14 log.49176860._000148.job.log.tgz.1
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc      6318 Mar 17 05:14 heartbeat.json
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc        95 Mar 17 05:15 pilot_heartbeat.json
[2026-03-17 05:16:02] -rw-r--r--. 1 boinc boinc      8192 Mar 17 05:15 boinc_mmap_file
[2026-03-17 05:16:02] -rw-r--r--. 1 boinc boinc        29 Mar 17 05:15 wrapper_checkpoint.txt
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc      5066 Mar 17 05:15 pilotlog.txt
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc   3815723 Mar 17 05:16 log.49176860._000148.job.log.1
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc       357 Mar 17 05:16 output.list
[2026-03-17 05:16:02] -rw-r--r--. 1 boinc boinc       620 Mar 17 05:16 runtime_log
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc   4485120 Mar 17 05:16 result.tar.gz
[2026-03-17 05:16:02] -rw-r--r--. 1 boinc boinc      8816 Mar 17 05:16 runtime_log.err
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc       657 Mar 17 05:16 etnLDmgxMM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmxkwLDmjAKoHm.diag
[2026-03-17 05:16:02] -rw-r--r--. 1 boinc boinc     20737 Mar 17 05:16 stderr.txt
[2026-03-17 05:16:02] HITS file was successfully produced:
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc 204270435 Mar 17 05:13 shared/HITS.pool.root.1
[2026-03-17 05:16:02]  *** Contents of shared directory: ***
[2026-03-17 05:16:02] total 424880
[2026-03-17 05:16:02] -rw-r--r--. 2 boinc boinc 225704395 Mar 16 21:31 ATLAS.root_0
[2026-03-17 05:16:02] -rw-r--r--. 2 boinc boinc     15845 Mar 16 21:31 start_atlas.sh
[2026-03-17 05:16:02] -rw-r--r--. 2 boinc boinc    597538 Mar 16 21:31 input.tar.gz
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc 204270435 Mar 17 05:13 HITS.pool.root.1
[2026-03-17 05:16:02] -rw-------. 1 boinc boinc   4485120 Mar 17 05:16 result.tar.gz
05:16:04 (15470): run_atlas exited; CPU time 108637.381415
05:16:04 (15470): called boinc_finish(0)

</stderr_txt>
]]>

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