Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:45:05 (12563): wrapper (7.7.26015): starting
00:45:05 (12563): wrapper: running run_atlas (--nthreads 8)
[2026-03-21 00:45:05] Arguments: --nthreads 8
[2026-03-21 00:45:05] Threads: 8
[2026-03-21 00:45:05] Checking for CVMFS
[2026-03-21 00:45:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-21 00:45:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-21 00:45:07] Running cvmfs_config stat atlas.cern.ch
[2026-03-21 00:45:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-21 00:45:09] 2.11.2.0 24514 136893 141476 157520 2 77 20014992 25165825 4502 130560 153 45412032 99.836 31227182 1089 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-21 00:45:09] CVMFS is ok
[2026-03-21 00:45:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-21 00:45:09] Checking for apptainer binary...
[2026-03-21 00:45:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-21 00:45:09] Running /usr/bin/apptainer --version
[2026-03-21 00:45:09] apptainer version 1.3.2-1.el7
[2026-03-21 00:45:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-21 00:45:45] cg-vwn473.simple-grid.lan
[2026-03-21 00:45:45] apptainer works
[2026-03-21 00:45:45] Set ATHENA_PROC_NUMBER=8
[2026-03-21 00:45:45] Set ATHENA_CORE_NUMBER=8
[2026-03-21 00:45:45] Starting ATLAS job with PandaID=7056907513
[2026-03-21 00:45:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-21 07:42:40]  *** The last 200 lines of the pilot log: ***
[2026-03-21 07:42:40] 2026-03-21 06:41:34,592 | INFO     | time since job start (24586s) is within the limit (345600.0s)
[2026-03-21 07:42:40] 2026-03-21 06:41:35,465 | INFO     | job 7056907513 has state=finished
[2026-03-21 07:42:40] 2026-03-21 06:41:35,466 | INFO     | preparing for final server update for job 7056907513 in state='finished'
[2026-03-21 07:42:40] 2026-03-21 06:41:35,466 | INFO     | reading metadata from: /var/lib/boinc/slots/18/PanDA_Pilot-7056907513/jobReport.json
[2026-03-21 07:42:40] 2026-03-21 06:41:35,468 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/18/workernode_map.json
[2026-03-21 07:42:40] 2026-03-21 06:41:35,468 | INFO     | this job has now completed (state=finished)
[2026-03-21 07:42:40] 2026-03-21 06:41:35,468 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-21 07:42:40] 2026-03-21 06:41:35,468 | INFO     | log transfer has been attempted: DONE
[2026-03-21 07:42:40] 2026-03-21 06:41:35,469 | INFO     | job 7056907513 has finished - writing final server update
[2026-03-21 07:42:40] 2026-03-21 06:41:35,469 | INFO     | total number of processed events: 400 (read)
[2026-03-21 07:42:40] 2026-03-21 06:41:35,471 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-7056907513/memory_monitor_summary.json (trf name=prmon)
[2026-03-21 07:42:40] 2026-03-21 06:41:35,471 | INFO     | extracted standard info from prmon json
[2026-03-21 07:42:40] 2026-03-21 06:41:35,471 | INFO     | extracted standard memory fields from prmon json
[2026-03-21 07:42:40] 2026-03-21 06:41:35,471 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-21 07:42:40] 2026-03-21 06:41:35,472 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-21 07:42:40] 2026-03-21 06:41:35,472 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-21 07:42:40] 2026-03-21 06:41:35,478 | INFO     | fitting pss+swap vs Time
[2026-03-21 07:42:40] 2026-03-21 06:41:35,479 | INFO     | sum of square deviations: 19549015839.5
[2026-03-21 07:42:40] 2026-03-21 06:41:35,483 | INFO     | sum of deviations: 94889846951.50003
[2026-03-21 07:42:40] 2026-03-21 06:41:35,483 | INFO     | mean x: 1774063156.5
[2026-03-21 07:42:40] 2026-03-21 06:41:35,483 | INFO     | mean y: 2491549.962311558
[2026-03-21 07:42:40] 2026-03-21 06:41:35,483 | INFO     | intersect: -8608713371.281727
[2026-03-21 07:42:40] 2026-03-21 06:41:35,484 | INFO     | chi2: 3.8133691706908177
[2026-03-21 07:42:40] 2026-03-21 06:41:35,484 | INFO     | sum of square deviations: 18821458012.0
[2026-03-21 07:42:40] 2026-03-21 06:41:35,496 | INFO     | sum of deviations: 120007342768.0
[2026-03-21 07:42:40] 2026-03-21 06:41:35,496 | INFO     | mean x: 1774063004.0
[2026-03-21 07:42:40] 2026-03-21 06:41:35,496 | INFO     | mean y: 2496758.0737913484
[2026-03-21 07:42:40] 2026-03-21 06:41:35,496 | INFO     | intersect: -11309091689.394875
[2026-03-21 07:42:40] 2026-03-21 06:41:35,497 | INFO     | chi2: 3.0545967185178857
[2026-03-21 07:42:40] 2026-03-21 06:41:35,497 | INFO     | current chi2=3.0545967185178857 (change=19.897691993861567 %)
[2026-03-21 07:42:40] 2026-03-21 06:41:35,497 | INFO     | right removable region: 392
[2026-03-21 07:42:40] 2026-03-21 06:41:35,498 | INFO     | sum of square deviations: 18821458012.0
[2026-03-21 07:42:40] 2026-03-21 06:41:35,501 | INFO     | sum of deviations: -8634859819.0
[2026-03-21 07:42:40] 2026-03-21 06:41:35,502 | INFO     | mean x: 1774063309.0
[2026-03-21 07:42:40] 2026-03-21 06:41:35,502 | INFO     | mean y: 2513179.254452926
[2026-03-21 07:42:40] 2026-03-21 06:41:35,502 | INFO     | intersect: 816413354.973012
[2026-03-21 07:42:40] 2026-03-21 06:41:35,502 | INFO     | chi2: 0.8688752401994155
[2026-03-21 07:42:40] 2026-03-21 06:41:35,503 | INFO     | current chi2=0.8688752401994155 (change=77.21502426574627 %)
[2026-03-21 07:42:40] 2026-03-21 06:41:35,503 | INFO     | sum of square deviations: 18112179597.0
[2026-03-21 07:42:40] 2026-03-21 06:41:35,507 | INFO     | sum of deviations: -15310799401.500008
[2026-03-21 07:42:40] 2026-03-21 06:41:35,507 | INFO     | mean x: 1774063461.5
[2026-03-21 07:42:40] 2026-03-21 06:41:35,507 | INFO     | mean y: 2514611.9510309277
[2026-03-21 07:42:40] 2026-03-21 06:41:35,508 | INFO     | intersect: 1502186677.3194778
[2026-03-21 07:42:40] 2026-03-21 06:41:35,508 | INFO     | chi2: 0.8578914293575867
[2026-03-21 07:42:40] 2026-03-21 06:41:35,508 | INFO     | current chi2=0.8578914293575867 (change=1.2641413097820549 %)
[2026-03-21 07:42:40] 2026-03-21 06:41:35,508 | INFO     | left removable region: 20
[2026-03-21 07:42:40] 2026-03-21 06:41:35,509 | INFO     | sum of square deviations: 15962617433.0
[2026-03-21 07:42:40] 2026-03-21 06:41:35,512 | INFO     | sum of deviations: 31614902002.0
[2026-03-21 07:42:40] 2026-03-21 06:41:35,513 | INFO     | mean x: 1774063583.5
[2026-03-21 07:42:40] 2026-03-21 06:41:35,513 | INFO     | mean y: 2515369.8978494625
[2026-03-21 07:42:40] 2026-03-21 06:41:35,513 | INFO     | intersect: -3511121824.821822
[2026-03-21 07:42:40] 2026-03-21 06:41:35,513 | INFO     | chi2: 0.0036860517145181535
[2026-03-21 07:42:40] 2026-03-21 06:41:35,514 | INFO     | current memory leak: 1.98 B/s (using 372 data points, chi2=0.00)
[2026-03-21 07:42:40] 2026-03-21 06:41:35,514 | INFO     | could have reported an average CPU frequency of 2249 MHz (17 samples)
[2026-03-21 07:42:40] 2026-03-21 06:41:35,514 | INFO     | ..............................
[2026-03-21 07:42:40] 2026-03-21 06:41:35,515 | INFO     | . Timing measurements:
[2026-03-21 07:42:40] 2026-03-21 06:41:35,515 | INFO     | . get job = 0 s
[2026-03-21 07:42:40] 2026-03-21 06:41:35,515 | INFO     | . initial setup = 97 s
[2026-03-21 07:42:40] 2026-03-21 06:41:35,515 | INFO     | . payload setup = 197 s
[2026-03-21 07:42:40] 2026-03-21 06:41:35,515 | INFO     | . stage-in = 0 s
[2026-03-21 07:42:40] 2026-03-21 06:41:35,515 | INFO     | . payload execution = 24367 s
[2026-03-21 07:42:40] 2026-03-21 06:41:35,515 | INFO     | . stage-out = 3 s
[2026-03-21 07:42:40] 2026-03-21 06:41:35,515 | INFO     | . log creation = 1 s
[2026-03-21 07:42:40] 2026-03-21 06:41:35,515 | INFO     | ..............................
[2026-03-21 07:42:40] 2026-03-21 06:41:35,608 | INFO     | 
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | job summary report
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | --------------------------------------------------
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | PanDA job id: 7056907513
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | task id: 49176860
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | errors: (none)
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | pilot state: finished 
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | transexitcode: 0
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | exeerrorcode: 0
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | exeerrordiag: 
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | exitcode: 0
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | exitmsg: OK
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | cpuconsumptiontime: 96139 s
[2026-03-21 07:42:40] 2026-03-21 06:41:35,609 | INFO     | nevents: 400
[2026-03-21 07:42:40] 2026-03-21 06:41:35,610 | INFO     | neventsw: 0
[2026-03-21 07:42:40] 2026-03-21 06:41:35,610 | INFO     | pid: 21545
[2026-03-21 07:42:40] 2026-03-21 06:41:35,610 | INFO     | pgrp: 21545
[2026-03-21 07:42:40] 2026-03-21 06:41:35,610 | INFO     | corecount: 8
[2026-03-21 07:42:40] 2026-03-21 06:41:35,610 | INFO     | event service: False
[2026-03-21 07:42:40] 2026-03-21 06:41:35,610 | INFO     | sizes: {0: 2279831, 1: 2280288, 2: 2280348, 12: 2280376, 24568: 2315616, 24569: 2315615, 24573: 2324855, 24575: 2325057}
[2026-03-21 07:42:40] 2026-03-21 06:41:35,610 | INFO     | --------------------------------------------------
[2026-03-21 07:42:40] 2026-03-21 06:41:35,610 | INFO     | 
[2026-03-21 07:42:40] 2026-03-21 06:41:35,610 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2026-03-21 07:42:40] 2026-03-21 06:41:36,263 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,263 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,263 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,263 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,263 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,263 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,263 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,263 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,264 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,264 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,264 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,264 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,264 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,264 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,264 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,264 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,264 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,264 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-21 07:42:40] 2026-03-21 06:41:36,264 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,264 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-21 07:42:40] 2026-03-21 06:41:36,265 | INFO     | job 7056907513 has completed (purged errors)
[2026-03-21 07:42:40] 2026-03-21 06:41:36,265 | INFO     | overall cleanup function is called
[2026-03-21 07:42:40] 2026-03-21 06:41:37,273 | INFO     | --- collectZombieJob: --- 10, [21545]
[2026-03-21 07:42:40] 2026-03-21 06:41:37,273 | INFO     | zombie collector waiting for pid 21545
[2026-03-21 07:42:40] 2026-03-21 06:41:37,273 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-21 07:42:40] 2026-03-21 06:41:37,274 | INFO     | collected zombie processes
[2026-03-21 07:42:40] 2026-03-21 06:41:37,274 | INFO     | will attempt to kill all subprocesses of pid=21545
[2026-03-21 07:42:40] 2026-03-21 06:41:37,363 | INFO     | process IDs to be killed: [21545] (in reverse order)
[2026-03-21 07:42:40] 2026-03-21 06:41:38,197 | WARNING  | found no corresponding commands to process id(s)
[2026-03-21 07:42:40] 2026-03-21 06:41:38,197 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-21 07:42:40] 2026-03-21 06:41:38,200 | INFO     | did not find any defunct processes belonging to 21545
[2026-03-21 07:42:40] 2026-03-21 06:41:38,202 | INFO     | did not find any defunct processes belonging to 21545
[2026-03-21 07:42:40] 2026-03-21 06:41:38,203 | INFO     | ready for new job
[2026-03-21 07:42:40] 2026-03-21 06:41:38,203 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-21 07:42:40] 2026-03-21 06:41:38,205 | INFO     | **************************************
[2026-03-21 07:42:40] 2026-03-21 06:41:38,205 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-21 07:42:40] 2026-03-21 06:41:38,205 | INFO     | **************************************
[2026-03-21 07:42:40] 2026-03-21 06:41:38,205 | INFO     | 
[2026-03-21 07:42:40] 2026-03-21 06:41:38,206 | INFO     | pilot is running in a VM
[2026-03-21 07:42:40] 2026-03-21 06:41:38,206 | INFO     | architecture information:
[2026-03-21 07:42:40] 2026-03-21 06:41:38,214 | INFO     | executing command: cat /etc/os-release
[2026-03-21 07:42:40] 2026-03-21 06:41:38,479 | INFO     | cat /etc/os-release:
[2026-03-21 07:42:40] NAME="CentOS Linux"
[2026-03-21 07:42:40] VERSION="7 (Core)"
[2026-03-21 07:42:40] ID="centos"
[2026-03-21 07:42:40] ID_LIKE="rhel fedora"
[2026-03-21 07:42:40] VERSION_ID="7"
[2026-03-21 07:42:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-21 07:42:40] ANSI_COLOR="0;31"
[2026-03-21 07:42:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-21 07:42:40] HOME_URL="https://www.centos.org/"
[2026-03-21 07:42:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-21 07:42:40] 
[2026-03-21 07:42:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-21 07:42:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-21 07:42:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-21 07:42:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-21 07:42:40] 
[2026-03-21 07:42:40] 2026-03-21 06:41:38,479 | INFO     | **************************************
[2026-03-21 07:42:40] 2026-03-21 06:41:38,982 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2026-03-21 07:42:40] 2026-03-21 06:41:39,311 | INFO     | sufficient remaining disk space (495497248768 B)
[2026-03-21 07:42:40] 2026-03-21 06:41:39,311 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-21 07:42:40] 2026-03-21 06:41:39,311 | INFO     | current server update state: UPDATING_FINAL
[2026-03-21 07:42:40] 2026-03-21 06:41:39,311 | INFO     | update_server=False
[2026-03-21 07:42:40] 2026-03-21 06:41:39,311 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-21 07:42:40] 2026-03-21 06:41:39,312 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-21 07:42:40] 2026-03-21 06:41:39,620 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-21 07:42:40] 2026-03-21 06:41:39,620 | INFO     | aborting loop
[2026-03-21 07:42:40] 2026-03-21 06:41:39,798 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-21 07:42:40] 2026-03-21 06:41:39,860 | INFO     | all data control threads have been joined
[2026-03-21 07:42:40] 2026-03-21 06:41:40,317 | INFO     | [job] retrieve thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:40,485 | INFO     | [payload] failed_post thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:40,582 | INFO     | all job control threads have been joined
[2026-03-21 07:42:40] 2026-03-21 06:41:40,624 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-21 07:42:40] 2026-03-21 06:41:40,626 | INFO     | [job] job monitor thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:40,748 | INFO     | all payload control threads have been joined
[2026-03-21 07:42:40] 2026-03-21 06:41:40,772 | INFO     | [job] validate thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:40,866 | INFO     | [data] control thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:41,319 | INFO     | [data] copytool_out thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:41,337 | INFO     | [data] copytool_in thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:41,338 | INFO     | [job] create_data_payload thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:41,379 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:41,497 | INFO     | [payload] validate_pre thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:41,528 | INFO     | [payload] validate_post thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:41,573 | INFO     | [payload] execute_payloads thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:41,588 | INFO     | [job] control thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:41,630 | INFO     | [job] queue monitor thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:41,753 | INFO     | [payload] control thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:41:43,806 | INFO     | [data] queue_monitor thread has finished
[2026-03-21 07:42:40] 2026-03-21 06:42:07,783 | INFO     | PID=16888 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-21 07:42:40] 2026-03-21 06:42:07,783 | INFO     | .. there are 9 such processes running
[2026-03-21 07:42:40] 2026-03-21 06:42:07,784 | INFO     | found 0 job(s) in 20 queues
[2026-03-21 07:42:40] 2026-03-21 06:42:07,784 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-21 07:42:40] 2026-03-21 06:42:07,784 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-21 07:42:40] 2026-03-21 06:42:29,943 | INFO     | [monitor] cgroup control has ended
[2026-03-21 07:42:40] 2026-03-21 06:42:30,504 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139968498333504)>', '<ExcThread(monitor, started 139968060049152)>']
[2026-03-21 07:42:40] 2026-03-21 06:42:30,921 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-21 07:42:40] 2026-03-21 06:42:30,921 | INFO     | [monitor] control thread has ended
[2026-03-21 07:42:40] 2026-03-21 06:42:35,530 | INFO     | all workflow threads have been joined
[2026-03-21 07:42:40] 2026-03-21 06:42:35,530 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-21 07:42:40] 2026-03-21 06:42:35,531 | INFO     | traces error code: 0
[2026-03-21 07:42:40] 2026-03-21 06:42:35,531 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-21 07:42:40] 2026-03-21 06:42:35,729 [wrapper] ==== pilot stdout END ====
[2026-03-21 07:42:40] 2026-03-21 06:42:35,743 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-21 07:42:40] 2026-03-21 06:42:35,752 [wrapper] pilotpid: 16888
[2026-03-21 07:42:40] 2026-03-21 06:42:35,762 [wrapper] Pilot exit status: 0
[2026-03-21 07:42:40] 2026-03-21 06:42:36,007 [wrapper] pandaids: 7056907513
[2026-03-21 07:42:40] 2026-03-21 06:42:37,113 [wrapper] cleanup supervisor_pilot 14552 16889
[2026-03-21 07:42:40] 2026-03-21 06:42:37,240 [wrapper] Test setup, not cleaning
[2026-03-21 07:42:40] 2026-03-21 06:42:37,331 [wrapper] apfmon messages muted
[2026-03-21 07:42:40] 2026-03-21 06:42:37,435 [wrapper] ==== wrapper stdout END ====
[2026-03-21 07:42:40] 2026-03-21 06:42:37,537 [wrapper] ==== wrapper stderr END ====
[2026-03-21 07:42:40]  *** Error codes and diagnostics ***
[2026-03-21 07:42:40]     "exeErrorCode": 0,
[2026-03-21 07:42:40]     "exeErrorDiag": "",
[2026-03-21 07:42:40]     "pilotErrorCode": 0,
[2026-03-21 07:42:40]     "pilotErrorDiag": "",
[2026-03-21 07:42:40]  *** Listing of results directory ***
[2026-03-21 07:42:40] total 442468
[2026-03-21 07:42:40] -rwx------. 1 boinc boinc     36322 Mar 16 14:15 runpilot2-wrapper.sh
[2026-03-21 07:42:40] -rw-r--r--. 1 boinc boinc    585013 Mar 16 14:19 pilot3.tar.gz
[2026-03-21 07:42:40] -rw-r--r--. 1 boinc boinc      5111 Mar 16 14:25 queuedata.json
[2026-03-21 07:42:40] -rw-r--r--. 1 boinc boinc       100 Mar 21 00:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-21 07:42:40] -rwxr-xr-x. 1 boinc boinc      7986 Mar 21 00:45 run_atlas
[2026-03-21 07:42:40] -rw-r--r--. 1 boinc boinc       105 Mar 21 00:45 job.xml
[2026-03-21 07:42:40] -rw-r--r--. 1 boinc boinc      6392 Mar 21 00:45 init_data.xml
[2026-03-21 07:42:40] -rw-r--r--. 2 boinc boinc 232490808 Mar 21 00:45 EVNT.49135504._000005.pool.root.1
[2026-03-21 07:42:40] -rw-r--r--. 2 boinc boinc     15845 Mar 21 00:45 start_atlas.sh
[2026-03-21 07:42:40] drwxrwx--x. 2 boinc boinc        68 Mar 21 00:45 shared
[2026-03-21 07:42:40] -rw-r--r--. 2 boinc boinc    597538 Mar 21 00:45 input.tar.gz
[2026-03-21 07:42:40] -rw-r--r--. 1 boinc boinc         0 Mar 21 00:45 boinc_lockfile
[2026-03-21 07:42:40] -rw-r--r--. 1 boinc boinc      2624 Mar 21 00:45 pandaJob.out
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc       415 Mar 21 00:51 workernode_map.json
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc   1010671 Mar 21 00:51 agis_schedconf.cvmfs.json
[2026-03-21 07:42:40] drwx------. 5 boinc boinc      4096 Mar 21 00:51 pilot3
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc 208648133 Mar 21 07:40 HITS.49176860._000112.pool.root.1
[2026-03-21 07:42:40] -rw-r--r--. 1 boinc boinc       531 Mar 21 07:40 boinc_task_state.xml
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc      1013 Mar 21 07:41 memory_monitor_summary.json
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc   1511579 Mar 21 07:41 agis_ddmendpoints.agis.ALL.json
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc    599278 Mar 21 07:41 log.49176860._000112.job.log.tgz.1
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc      6299 Mar 21 07:41 heartbeat.json
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc        95 Mar 21 07:42 pilot_heartbeat.json
[2026-03-21 07:42:40] -rw-r--r--. 1 boinc boinc        28 Mar 21 07:42 wrapper_checkpoint.txt
[2026-03-21 07:42:40] -rw-r--r--. 1 boinc boinc      8192 Mar 21 07:42 boinc_mmap_file
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc      4881 Mar 21 07:42 pilotlog.txt
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc   3410846 Mar 21 07:42 log.49176860._000112.job.log.1
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc       357 Mar 21 07:42 output.list
[2026-03-21 07:42:40] -rw-r--r--. 1 boinc boinc       620 Mar 21 07:42 runtime_log
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc   4024320 Mar 21 07:42 result.tar.gz
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc       657 Mar 21 07:42 XB8MDmnxMM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmRZtLDm9w5txm.diag
[2026-03-21 07:42:40] -rw-r--r--. 1 boinc boinc      8832 Mar 21 07:42 runtime_log.err
[2026-03-21 07:42:40] -rw-r--r--. 1 boinc boinc     20933 Mar 21 07:42 stderr.txt
[2026-03-21 07:42:40] HITS file was successfully produced:
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc 208648133 Mar 21 07:40 shared/HITS.pool.root.1
[2026-03-21 07:42:40]  *** Contents of shared directory: ***
[2026-03-21 07:42:40] total 435336
[2026-03-21 07:42:40] -rw-r--r--. 2 boinc boinc 232490808 Mar 21 00:45 ATLAS.root_0
[2026-03-21 07:42:40] -rw-r--r--. 2 boinc boinc     15845 Mar 21 00:45 start_atlas.sh
[2026-03-21 07:42:40] -rw-r--r--. 2 boinc boinc    597538 Mar 21 00:45 input.tar.gz
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc 208648133 Mar 21 07:40 HITS.pool.root.1
[2026-03-21 07:42:40] -rw-------. 1 boinc boinc   4024320 Mar 21 07:42 result.tar.gz
07:42:42 (12563): run_atlas exited; CPU time 96430.039581
07:42:42 (12563): called boinc_finish(0)

</stderr_txt>
]]>

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