Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:19:31 (10981): wrapper (7.7.26015): starting
00:19:31 (10981): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 00:19:31] Arguments: --nthreads 8
[2026-03-17 00:19:31] Threads: 8
[2026-03-17 00:19:31] Checking for CVMFS
[2026-03-17 00:19:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 00:19:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 00:19:35] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 00:19:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 00:19:36] 2.11.2.0 28330 131105 138364 157351 2 199 23746036 25165825 96 130560 157 38268296 99.822 28134336 927 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-17 00:19:36] CVMFS is ok
[2026-03-17 00:19:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 00:19:36] Checking for apptainer binary...
[2026-03-17 00:19:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-17 00:19:36] Running /usr/bin/apptainer --version
[2026-03-17 00:19:36] apptainer version 1.3.2-1.el7
[2026-03-17 00:19:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 00:19:51] cg-vwn377.simple-grid.lan
[2026-03-17 00:19:51] apptainer works
[2026-03-17 00:19:51] Set ATHENA_PROC_NUMBER=8
[2026-03-17 00:19:51] Set ATHENA_CORE_NUMBER=8
[2026-03-17 00:19:51] Starting ATLAS job with PandaID=7056904631
[2026-03-17 00:19:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 10:20:05]  *** The last 200 lines of the pilot log: ***
[2026-03-17 10:20:05] 2026-03-17 09:19:13,782 | INFO     | log transfer has been attempted: DONE
[2026-03-17 10:20:05] 2026-03-17 09:19:13,782 | INFO     | job 7056904631 has finished - writing final server update
[2026-03-17 10:20:05] 2026-03-17 09:19:13,782 | INFO     | total number of processed events: 400 (read)
[2026-03-17 10:20:05] 2026-03-17 09:19:13,784 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-7056904631/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 10:20:05] 2026-03-17 09:19:13,785 | INFO     | extracted standard info from prmon json
[2026-03-17 10:20:05] 2026-03-17 09:19:13,785 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 10:20:05] 2026-03-17 09:19:13,785 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 10:20:05] 2026-03-17 09:19:13,786 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 10:20:05] 2026-03-17 09:19:13,786 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 10:20:05] 2026-03-17 09:19:13,798 | INFO     | fitting pss+swap vs Time
[2026-03-17 10:20:05] 2026-03-17 09:19:13,799 | INFO     | sum of square deviations: 60188402930.0
[2026-03-17 10:20:05] 2026-03-17 09:19:13,815 | INFO     | sum of deviations: -133288295037.00003
[2026-03-17 10:20:05] 2026-03-17 09:19:13,816 | INFO     | mean x: 1773721478.0
[2026-03-17 10:20:05] 2026-03-17 09:19:13,816 | INFO     | mean y: 2556165.081174439
[2026-03-17 10:20:05] 2026-03-17 09:19:13,816 | INFO     | intersect: 3930494109.3406925
[2026-03-17 10:20:05] 2026-03-17 09:19:13,817 | INFO     | chi2: 8.326028582756212
[2026-03-17 10:20:05] 2026-03-17 09:19:13,818 | INFO     | sum of square deviations: 58642541387.5
[2026-03-17 10:20:05] 2026-03-17 09:19:13,834 | INFO     | sum of deviations: -91628190615.4997
[2026-03-17 10:20:05] 2026-03-17 09:19:13,834 | INFO     | mean x: 1773721325.5
[2026-03-17 10:20:05] 2026-03-17 09:19:13,834 | INFO     | mean y: 2560248.217770035
[2026-03-17 10:20:05] 2026-03-17 09:19:13,835 | INFO     | intersect: 2773976218.029977
[2026-03-17 10:20:05] 2026-03-17 09:19:13,836 | INFO     | chi2: 7.5854277880887295
[2026-03-17 10:20:05] 2026-03-17 09:19:13,836 | INFO     | current chi2=7.5854277880887295 (change=8.89500663258974 %)
[2026-03-17 10:20:05] 2026-03-17 09:19:13,836 | INFO     | right removable region: 573
[2026-03-17 10:20:05] 2026-03-17 09:19:13,837 | INFO     | sum of square deviations: 58642541387.5
[2026-03-17 10:20:05] 2026-03-17 09:19:13,848 | INFO     | sum of deviations: -343402315211.0
[2026-03-17 10:20:05] 2026-03-17 09:19:13,848 | INFO     | mean x: 1773721630.5
[2026-03-17 10:20:05] 2026-03-17 09:19:13,848 | INFO     | mean y: 2576885.7770034843
[2026-03-17 10:20:05] 2026-03-17 09:19:13,848 | INFO     | intersect: 10389236468.428774
[2026-03-17 10:20:05] 2026-03-17 09:19:13,849 | INFO     | chi2: 3.6536720078519354
[2026-03-17 10:20:05] 2026-03-17 09:19:13,850 | INFO     | current chi2=3.6536720078519354 (change=56.11746979323436 %)
[2026-03-17 10:20:05] 2026-03-17 09:19:13,851 | INFO     | sum of square deviations: 57123378020.0
[2026-03-17 10:20:05] 2026-03-17 09:19:13,867 | INFO     | sum of deviations: -480478084692.99994
[2026-03-17 10:20:05] 2026-03-17 09:19:13,868 | INFO     | mean x: 1773721783.0
[2026-03-17 10:20:05] 2026-03-17 09:19:13,868 | INFO     | mean y: 2590625.166959578
[2026-03-17 10:20:05] 2026-03-17 09:19:13,868 | INFO     | intersect: 14921779136.317493
[2026-03-17 10:20:05] 2026-03-17 09:19:13,869 | INFO     | chi2: 1.4615787337210213
[2026-03-17 10:20:05] 2026-03-17 09:19:13,869 | INFO     | current chi2=1.4615787337210213 (change=59.99699123019223 %)
[2026-03-17 10:20:05] 2026-03-17 09:19:13,870 | INFO     | sum of square deviations: 55630680265.0
[2026-03-17 10:20:05] 2026-03-17 09:19:13,886 | INFO     | sum of deviations: -504177704226.0
[2026-03-17 10:20:05] 2026-03-17 09:19:13,886 | INFO     | mean x: 1773721935.5
[2026-03-17 10:20:05] 2026-03-17 09:19:13,886 | INFO     | mean y: 2593041.365248227
[2026-03-17 10:20:05] 2026-03-17 09:19:13,887 | INFO     | intersect: 16077734476.195358
[2026-03-17 10:20:05] 2026-03-17 09:19:13,887 | INFO     | chi2: 1.3338357294997016
[2026-03-17 10:20:05] 2026-03-17 09:19:13,888 | INFO     | current chi2=1.3338357294997016 (change=8.74006998556279 %)
[2026-03-17 10:20:05] 2026-03-17 09:19:13,888 | INFO     | left removable region: 30
[2026-03-17 10:20:05] 2026-03-17 09:19:13,889 | INFO     | sum of square deviations: 49645105712.0
[2026-03-17 10:20:05] 2026-03-17 09:19:13,898 | INFO     | sum of deviations: -437725684289.9999
[2026-03-17 10:20:05] 2026-03-17 09:19:13,899 | INFO     | mean x: 1773722210.0
[2026-03-17 10:20:05] 2026-03-17 09:19:13,899 | INFO     | mean y: 2595317.655616943
[2026-03-17 10:20:05] 2026-03-17 09:19:13,899 | INFO     | intersect: 15641675081.463068
[2026-03-17 10:20:05] 2026-03-17 09:19:13,900 | INFO     | chi2: 0.5222563682316801
[2026-03-17 10:20:05] 2026-03-17 09:19:13,900 | INFO     | current memory leak: -8.82 B/s (using 543 data points, chi2=0.52)
[2026-03-17 10:20:05] 2026-03-17 09:19:13,901 | INFO     | could have reported an average CPU frequency of 1999 MHz (23 samples)
[2026-03-17 10:20:05] 2026-03-17 09:19:13,902 | INFO     | ..............................
[2026-03-17 10:20:05] 2026-03-17 09:19:13,902 | INFO     | . Timing measurements:
[2026-03-17 10:20:05] 2026-03-17 09:19:13,902 | INFO     | . get job = 0 s
[2026-03-17 10:20:05] 2026-03-17 09:19:13,902 | INFO     | . initial setup = 125 s
[2026-03-17 10:20:05] 2026-03-17 09:19:13,902 | INFO     | . payload setup = 156 s
[2026-03-17 10:20:05] 2026-03-17 09:19:13,902 | INFO     | . stage-in = 0 s
[2026-03-17 10:20:05] 2026-03-17 09:19:13,902 | INFO     | . payload execution = 35410 s
[2026-03-17 10:20:05] 2026-03-17 09:19:13,902 | INFO     | . stage-out = 4 s
[2026-03-17 10:20:05] 2026-03-17 09:19:13,902 | INFO     | . log creation = 1 s
[2026-03-17 10:20:05] 2026-03-17 09:19:13,903 | INFO     | ..............................
[2026-03-17 10:20:05] 2026-03-17 09:19:14,035 | INFO     | 
[2026-03-17 10:20:05] 2026-03-17 09:19:14,035 | INFO     | job summary report
[2026-03-17 10:20:05] 2026-03-17 09:19:14,035 | INFO     | --------------------------------------------------
[2026-03-17 10:20:05] 2026-03-17 09:19:14,035 | INFO     | PanDA job id: 7056904631
[2026-03-17 10:20:05] 2026-03-17 09:19:14,036 | INFO     | task id: 49176745
[2026-03-17 10:20:05] 2026-03-17 09:19:14,036 | INFO     | errors: (none)
[2026-03-17 10:20:05] 2026-03-17 09:19:14,036 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 10:20:05] 2026-03-17 09:19:14,036 | INFO     | pilot state: finished 
[2026-03-17 10:20:05] 2026-03-17 09:19:14,036 | INFO     | transexitcode: 0
[2026-03-17 10:20:05] 2026-03-17 09:19:14,036 | INFO     | exeerrorcode: 0
[2026-03-17 10:20:05] 2026-03-17 09:19:14,036 | INFO     | exeerrordiag: 
[2026-03-17 10:20:05] 2026-03-17 09:19:14,036 | INFO     | exitcode: 0
[2026-03-17 10:20:05] 2026-03-17 09:19:14,036 | INFO     | exitmsg: OK
[2026-03-17 10:20:05] 2026-03-17 09:19:14,037 | INFO     | cpuconsumptiontime: 147038 s
[2026-03-17 10:20:05] 2026-03-17 09:19:14,037 | INFO     | nevents: 400
[2026-03-17 10:20:05] 2026-03-17 09:19:14,037 | INFO     | neventsw: 0
[2026-03-17 10:20:05] 2026-03-17 09:19:14,037 | INFO     | pid: 19398
[2026-03-17 10:20:05] 2026-03-17 09:19:14,037 | INFO     | pgrp: 19398
[2026-03-17 10:20:05] 2026-03-17 09:19:14,037 | INFO     | corecount: 8
[2026-03-17 10:20:05] 2026-03-17 09:19:14,037 | INFO     | event service: False
[2026-03-17 10:20:05] 2026-03-17 09:19:14,037 | INFO     | sizes: {0: 2279218, 1: 2279903, 2: 2280364, 13: 2280364, 35570: 2320789, 35571: 2320788, 35576: 2329970, 35578: 2330026, 35587: 2330220}
[2026-03-17 10:20:05] 2026-03-17 09:19:14,037 | INFO     | --------------------------------------------------
[2026-03-17 10:20:05] 2026-03-17 09:19:14,038 | INFO     | 
[2026-03-17 10:20:05] 2026-03-17 09:19:14,038 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-03-17 10:20:05] 2026-03-17 09:19:14,636 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,636 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,636 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,637 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,637 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,637 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,637 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,637 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,637 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,637 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,637 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,638 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,638 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,638 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,638 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,638 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,638 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,638 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 10:20:05] 2026-03-17 09:19:14,638 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,639 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 10:20:05] 2026-03-17 09:19:14,639 | INFO     | job 7056904631 has completed (purged errors)
[2026-03-17 10:20:05] 2026-03-17 09:19:14,639 | INFO     | overall cleanup function is called
[2026-03-17 10:20:05] 2026-03-17 09:19:15,649 | INFO     | --- collectZombieJob: --- 10, [19398]
[2026-03-17 10:20:05] 2026-03-17 09:19:15,649 | INFO     | zombie collector waiting for pid 19398
[2026-03-17 10:20:05] 2026-03-17 09:19:15,649 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 10:20:05] 2026-03-17 09:19:15,649 | INFO     | collected zombie processes
[2026-03-17 10:20:05] 2026-03-17 09:19:15,650 | INFO     | will attempt to kill all subprocesses of pid=19398
[2026-03-17 10:20:05] 2026-03-17 09:19:15,717 | INFO     | process IDs to be killed: [19398] (in reverse order)
[2026-03-17 10:20:05] 2026-03-17 09:19:16,159 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 10:20:05] 2026-03-17 09:19:16,159 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 10:20:05] 2026-03-17 09:19:16,161 | INFO     | did not find any defunct processes belonging to 19398
[2026-03-17 10:20:05] 2026-03-17 09:19:16,163 | INFO     | did not find any defunct processes belonging to 19398
[2026-03-17 10:20:05] 2026-03-17 09:19:16,163 | INFO     | ready for new job
[2026-03-17 10:20:05] 2026-03-17 09:19:16,164 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 10:20:05] 2026-03-17 09:19:16,167 | INFO     | **************************************
[2026-03-17 10:20:05] 2026-03-17 09:19:16,167 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 10:20:05] 2026-03-17 09:19:16,167 | INFO     | **************************************
[2026-03-17 10:20:05] 2026-03-17 09:19:16,167 | INFO     | 
[2026-03-17 10:20:05] 2026-03-17 09:19:16,168 | INFO     | pilot is running in a VM
[2026-03-17 10:20:05] 2026-03-17 09:19:16,168 | INFO     | architecture information:
[2026-03-17 10:20:05] 2026-03-17 09:19:16,181 | INFO     | executing command: cat /etc/os-release
[2026-03-17 10:20:05] 2026-03-17 09:19:16,508 | INFO     | cat /etc/os-release:
[2026-03-17 10:20:05] NAME="CentOS Linux"
[2026-03-17 10:20:05] VERSION="7 (Core)"
[2026-03-17 10:20:05] ID="centos"
[2026-03-17 10:20:05] ID_LIKE="rhel fedora"
[2026-03-17 10:20:05] VERSION_ID="7"
[2026-03-17 10:20:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 10:20:05] ANSI_COLOR="0;31"
[2026-03-17 10:20:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 10:20:05] HOME_URL="https://www.centos.org/"
[2026-03-17 10:20:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 10:20:05] 
[2026-03-17 10:20:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 10:20:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 10:20:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 10:20:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 10:20:05] 
[2026-03-17 10:20:05] 2026-03-17 09:19:16,509 | INFO     | **************************************
[2026-03-17 10:20:05] 2026-03-17 09:19:17,012 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-03-17 10:20:05] 2026-03-17 09:19:17,356 | INFO     | sufficient remaining disk space (496976789504 B)
[2026-03-17 10:20:05] 2026-03-17 09:19:17,357 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 10:20:05] 2026-03-17 09:19:17,357 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 10:20:05] 2026-03-17 09:19:17,357 | INFO     | update_server=False
[2026-03-17 10:20:05] 2026-03-17 09:19:17,357 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 10:20:05] 2026-03-17 09:19:17,426 | INFO     | all payload control threads have been joined
[2026-03-17 10:20:05] 2026-03-17 09:19:17,727 | INFO     | all data control threads have been joined
[2026-03-17 10:20:05] 2026-03-17 09:19:17,894 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 10:20:05] 2026-03-17 09:19:17,894 | INFO     | aborting loop
[2026-03-17 10:20:05] 2026-03-17 09:19:18,085 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 10:20:05] 2026-03-17 09:19:18,137 | INFO     | all job control threads have been joined
[2026-03-17 10:20:05] 2026-03-17 09:19:18,363 | INFO     | [job] retrieve thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:18,373 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:18,432 | INFO     | [payload] control thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:18,609 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:18,733 | INFO     | [data] control thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:18,832 | INFO     | [data] copytool_in thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:18,900 | INFO     | [job] job monitor thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:19,053 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 10:20:05] 2026-03-17 09:19:19,143 | INFO     | [job] control thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:19,545 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:19,570 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:19,651 | INFO     | [payload] validate_post thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:19,815 | INFO     | [payload] failed_post thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:19,855 | INFO     | [job] validate thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:20,059 | INFO     | [job] queue monitor thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:20,078 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 10:20:05] 2026-03-17 09:19:20,092 | INFO     | [data] copytool_out thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:24,087 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 10:20:05] 2026-03-17 09:19:46,037 | INFO     | PID=14958 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-17 10:20:05] 2026-03-17 09:19:46,037 | INFO     | .. there are 2 such processes running
[2026-03-17 10:20:05] 2026-03-17 09:19:46,037 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 10:20:05] 2026-03-17 09:19:46,037 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 10:20:05] 2026-03-17 09:19:46,037 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 10:20:05] 2026-03-17 09:19:54,834 | INFO     | [monitor] cgroup control has ended
[2026-03-17 10:20:05] 2026-03-17 09:19:54,888 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140717608851264)>', '<ExcThread(monitor, started 140716793644800)>']
[2026-03-17 10:20:05] 2026-03-17 09:19:55,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 10:20:05] 2026-03-17 09:19:55,091 | INFO     | [monitor] control thread has ended
[2026-03-17 10:20:05] 2026-03-17 09:19:59,914 | INFO     | all workflow threads have been joined
[2026-03-17 10:20:05] 2026-03-17 09:19:59,914 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 10:20:05] 2026-03-17 09:19:59,914 | INFO     | traces error code: 0
[2026-03-17 10:20:05] 2026-03-17 09:19:59,915 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 10:20:05] 2026-03-17 09:20:00,325 [wrapper] ==== pilot stdout END ====
[2026-03-17 10:20:05] 2026-03-17 09:20:00,397 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 10:20:05] 2026-03-17 09:20:00,505 [wrapper] pilotpid: 14958
[2026-03-17 10:20:05] 2026-03-17 09:20:00,578 [wrapper] Pilot exit status: 0
[2026-03-17 10:20:05] 2026-03-17 09:20:01,104 [wrapper] pandaids: 7056904631
[2026-03-17 10:20:05] 2026-03-17 09:20:02,245 [wrapper] cleanup supervisor_pilot 14626 14959
[2026-03-17 10:20:05] 2026-03-17 09:20:02,342 [wrapper] Test setup, not cleaning
[2026-03-17 10:20:05] 2026-03-17 09:20:02,443 [wrapper] apfmon messages muted
[2026-03-17 10:20:05] 2026-03-17 09:20:02,591 [wrapper] ==== wrapper stdout END ====
[2026-03-17 10:20:05] 2026-03-17 09:20:02,692 [wrapper] ==== wrapper stderr END ====
[2026-03-17 10:20:05]  *** Error codes and diagnostics ***
[2026-03-17 10:20:05]     "exeErrorCode": 0,
[2026-03-17 10:20:05]     "exeErrorDiag": "",
[2026-03-17 10:20:05]     "pilotErrorCode": 0,
[2026-03-17 10:20:05]     "pilotErrorDiag": "",
[2026-03-17 10:20:05]  *** Listing of results directory ***
[2026-03-17 10:20:05] total 482656
[2026-03-17 10:20:05] -rwx------. 1 boinc boinc     36322 Mar 16 14:14 runpilot2-wrapper.sh
[2026-03-17 10:20:05] -rw-r--r--. 1 boinc boinc    585013 Mar 16 14:19 pilot3.tar.gz
[2026-03-17 10:20:05] -rw-r--r--. 1 boinc boinc      5111 Mar 16 14:25 queuedata.json
[2026-03-17 10:20:05] -rw-r--r--. 1 boinc boinc       100 Mar 17 00:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 10:20:05] -rwxr-xr-x. 1 boinc boinc      7986 Mar 17 00:19 run_atlas
[2026-03-17 10:20:05] -rw-r--r--. 1 boinc boinc       105 Mar 17 00:19 job.xml
[2026-03-17 10:20:05] -rw-r--r--. 1 boinc boinc      6391 Mar 17 00:19 init_data.xml
[2026-03-17 10:20:05] -rw-r--r--. 2 boinc boinc 238073720 Mar 17 00:19 EVNT.49135079._000004.pool.root.1
[2026-03-17 10:20:05] -rw-r--r--. 2 boinc boinc     15845 Mar 17 00:19 start_atlas.sh
[2026-03-17 10:20:05] drwxrwx--x. 2 boinc boinc        68 Mar 17 00:19 shared
[2026-03-17 10:20:05] -rw-r--r--. 2 boinc boinc    597539 Mar 17 00:19 input.tar.gz
[2026-03-17 10:20:05] -rw-r--r--. 1 boinc boinc         0 Mar 17 00:19 boinc_lockfile
[2026-03-17 10:20:05] -rw-r--r--. 1 boinc boinc      2615 Mar 17 00:19 pandaJob.out
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc       415 Mar 17 00:25 workernode_map.json
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc   1006429 Mar 17 00:25 agis_schedconf.cvmfs.json
[2026-03-17 10:20:05] drwx------. 5 boinc boinc      4096 Mar 17 00:25 pilot3
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc 240822702 Mar 17 10:17 HITS.49176745._000099.pool.root.1
[2026-03-17 10:20:05] -rw-r--r--. 1 boinc boinc       532 Mar 17 10:17 boinc_task_state.xml
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc      1019 Mar 17 10:18 memory_monitor_summary.json
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc   1511579 Mar 17 10:18 agis_ddmendpoints.agis.ALL.json
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc    767409 Mar 17 10:19 log.49176745._000099.job.log.tgz.1
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc        95 Mar 17 10:19 pilot_heartbeat.json
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc      6322 Mar 17 10:19 heartbeat.json
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc      4880 Mar 17 10:19 pilotlog.txt
[2026-03-17 10:20:05] -rw-r--r--. 1 boinc boinc      8192 Mar 17 10:20 boinc_mmap_file
[2026-03-17 10:20:05] -rw-r--r--. 1 boinc boinc        29 Mar 17 10:20 wrapper_checkpoint.txt
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc   4944208 Mar 17 10:20 log.49176745._000099.job.log.1
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc       357 Mar 17 10:20 output.list
[2026-03-17 10:20:05] -rw-r--r--. 1 boinc boinc       620 Mar 17 10:20 runtime_log
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc   5724160 Mar 17 10:20 result.tar.gz
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc       658 Mar 17 10:20 Yw0LDm8wMM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmPhwLDmcDNRxn.diag
[2026-03-17 10:20:05] -rw-r--r--. 1 boinc boinc      8816 Mar 17 10:20 runtime_log.err
[2026-03-17 10:20:05] -rw-r--r--. 1 boinc boinc     20732 Mar 17 10:20 stderr.txt
[2026-03-17 10:20:05] HITS file was successfully produced:
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc 240822702 Mar 17 10:17 shared/HITS.pool.root.1
[2026-03-17 10:20:05]  *** Contents of shared directory: ***
[2026-03-17 10:20:05] total 473868
[2026-03-17 10:20:05] -rw-r--r--. 2 boinc boinc 238073720 Mar 17 00:19 ATLAS.root_0
[2026-03-17 10:20:05] -rw-r--r--. 2 boinc boinc     15845 Mar 17 00:19 start_atlas.sh
[2026-03-17 10:20:05] -rw-r--r--. 2 boinc boinc    597539 Mar 17 00:19 input.tar.gz
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc 240822702 Mar 17 10:17 HITS.pool.root.1
[2026-03-17 10:20:05] -rw-------. 1 boinc boinc   5724160 Mar 17 10:20 result.tar.gz
10:20:07 (10981): run_atlas exited; CPU time 147454.125737
10:20:07 (10981): called boinc_finish(0)

</stderr_txt>
]]>

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