Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:47:46 (901168): wrapper (7.7.26015): starting
21:47:46 (901168): wrapper: running run_atlas (--nthreads 4)
[2026-03-16 21:47:46] Arguments: --nthreads 4
[2026-03-16 21:47:46] Threads: 4
[2026-03-16 21:47:46] Checking for CVMFS
[2026-03-16 21:47:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-16 21:47:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-16 21:47:47] Running cvmfs_config stat atlas.cern.ch
[2026-03-16 21:47:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-16 21:47:47] 2.9.2.0 855332 468 56820 157351 3 188 30861616 36864000 0 130560 0 123335 99.987 2920 2813 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-16 21:47:47] CVMFS is ok
[2026-03-16 21:47:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-16 21:47:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-16 21:47:47] Further information can be found at the LHC@home message board.
[2026-03-16 21:47:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 21:47:47] Checking for apptainer binary...
[2026-03-16 21:47:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-16 21:47:47] Running /usr/bin/apptainer --version
[2026-03-16 21:47:47] apptainer version 1.4.1-1.1
[2026-03-16 21:47:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 21:47:47] magicA244a
[2026-03-16 21:47:47] apptainer works
[2026-03-16 21:47:47] Set ATHENA_PROC_NUMBER=4
[2026-03-16 21:47:47] Set ATHENA_CORE_NUMBER=4
[2026-03-16 21:47:47] Starting ATLAS job with PandaID=7056908479
[2026-03-16 21:47:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 00:47:20]  *** The last 200 lines of the pilot log: ***
[2026-03-17 00:47:20] 2026-03-16 23:46:13,041 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 00:47:20] 2026-03-16 23:46:13,041 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 00:47:20] 2026-03-16 23:46:13,041 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 00:47:20] 2026-03-16 23:46:13,041 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 00:47:20] 2026-03-16 23:46:13,041 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 00:47:20] 2026-03-16 23:46:13,041 | INFO     | job 7056908479 has completed (purged errors)
[2026-03-17 00:47:20] 2026-03-16 23:46:13,041 | INFO     | overall cleanup function is called
[2026-03-17 00:47:20] 2026-03-16 23:46:14,047 | INFO     | --- collectZombieJob: --- 10, [909791]
[2026-03-17 00:47:20] 2026-03-16 23:46:14,048 | INFO     | zombie collector waiting for pid 909791
[2026-03-17 00:47:20] 2026-03-16 23:46:14,048 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 00:47:20] 2026-03-16 23:46:14,048 | INFO     | collected zombie processes
[2026-03-17 00:47:20] 2026-03-16 23:46:14,048 | INFO     | will attempt to kill all subprocesses of pid=909791
[2026-03-17 00:47:20] 2026-03-16 23:46:14,090 | INFO     | process IDs to be killed: [909791] (in reverse order)
[2026-03-17 00:47:20] 2026-03-16 23:46:14,118 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 00:47:20] 2026-03-16 23:46:14,118 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 00:47:20] 2026-03-16 23:46:14,119 | INFO     | did not find any defunct processes belonging to 909791
[2026-03-17 00:47:20] 2026-03-16 23:46:14,120 | INFO     | did not find any defunct processes belonging to 909791
[2026-03-17 00:47:20] 2026-03-16 23:46:14,120 | INFO     | ready for new job
[2026-03-17 00:47:20] 2026-03-16 23:46:14,120 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 00:47:20] 2026-03-16 23:46:14,121 | INFO     | **************************************
[2026-03-17 00:47:20] 2026-03-16 23:46:14,121 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 00:47:20] 2026-03-16 23:46:14,121 | INFO     | **************************************
[2026-03-17 00:47:20] 2026-03-16 23:46:14,121 | INFO     | 
[2026-03-17 00:47:20] 2026-03-16 23:46:14,122 | INFO     | architecture information:
[2026-03-17 00:47:20] 2026-03-16 23:46:14,122 | INFO     | executing command: cat /etc/os-release
[2026-03-17 00:47:20] 2026-03-16 23:46:14,132 | INFO     | cat /etc/os-release:
[2026-03-17 00:47:20] NAME="CentOS Linux"
[2026-03-17 00:47:20] VERSION="7 (Core)"
[2026-03-17 00:47:20] ID="centos"
[2026-03-17 00:47:20] ID_LIKE="rhel fedora"
[2026-03-17 00:47:20] VERSION_ID="7"
[2026-03-17 00:47:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 00:47:20] ANSI_COLOR="0;31"
[2026-03-17 00:47:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 00:47:20] HOME_URL="https://www.centos.org/"
[2026-03-17 00:47:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 00:47:20] 
[2026-03-17 00:47:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 00:47:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 00:47:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 00:47:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 00:47:20] 
[2026-03-17 00:47:20] 2026-03-16 23:46:14,132 | INFO     | **************************************
[2026-03-17 00:47:20] 2026-03-16 23:46:14,635 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-17 00:47:20] 2026-03-16 23:46:14,649 | INFO     | sufficient remaining disk space (329131229184 B)
[2026-03-17 00:47:20] 2026-03-16 23:46:14,649 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 00:47:20] 2026-03-16 23:46:14,649 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 00:47:20] 2026-03-16 23:46:14,649 | INFO     | update_server=False
[2026-03-17 00:47:20] 2026-03-16 23:46:14,649 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 00:47:20] 2026-03-16 23:46:14,649 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 00:47:20] 2026-03-16 23:46:14,650 | INFO     | aborting loop
[2026-03-17 00:47:20] 2026-03-16 23:46:14,650 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 00:47:20] 2026-03-16 23:46:14,650 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 00:47:20] 2026-03-16 23:46:15,343 | INFO     | all data control threads have been joined
[2026-03-17 00:47:20] 2026-03-16 23:46:15,344 | INFO     | all job control threads have been joined
[2026-03-17 00:47:20] 2026-03-16 23:46:15,654 | INFO     | [job] retrieve thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:15,655 | INFO     | [job] job monitor thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:15,655 | INFO     | [job] queue monitor thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:15,727 | INFO     | all payload control threads have been joined
[2026-03-17 00:47:20] 2026-03-16 23:46:15,827 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:15,972 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 00:47:20] 2026-03-16 23:46:16,054 | INFO     | [payload] validate_post thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:16,349 | INFO     | [job] control thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:16,350 | INFO     | [data] control thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:16,674 | INFO     | [job] validate thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:16,733 | INFO     | [payload] control thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:16,739 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:16,753 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:16,753 | INFO     | [payload] failed_post thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:16,861 | INFO     | [data] copytool_in thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:17,979 | INFO     | [data] copytool_out thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:18,657 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:25,060 | INFO     | job.realtimelogging is not enabled
[2026-03-17 00:47:20] 2026-03-16 23:46:26,066 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 00:47:20] 2026-03-16 23:46:44,372 | INFO     | PID=905275 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-17 00:47:20] 2026-03-16 23:46:44,372 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 00:47:20] 2026-03-16 23:46:44,372 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 00:47:20] 2026-03-16 23:46:44,372 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 00:47:20] 2026-03-16 23:47:14,661 | INFO     | [monitor] cgroup control has ended
[2026-03-17 00:47:20] 2026-03-16 23:47:15,041 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140191839860544)>', '<ExcThread(monitor, started 140191213807360)>']
[2026-03-17 00:47:20] 2026-03-16 23:47:15,530 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 00:47:20] 2026-03-16 23:47:15,530 | INFO     | [monitor] control thread has ended
[2026-03-17 00:47:20] 2026-03-16 23:47:20,051 | INFO     | all workflow threads have been joined
[2026-03-17 00:47:20] 2026-03-16 23:47:20,053 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 00:47:20] 2026-03-16 23:47:20,053 | INFO     | traces error code: 0
[2026-03-17 00:47:20] 2026-03-16 23:47:20,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 00:47:20] 2026-03-16 23:47:20,105 [wrapper] ==== pilot stdout END ====
[2026-03-17 00:47:20] 2026-03-16 23:47:20,108 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 00:47:20] 2026-03-16 23:47:20,110 [wrapper] pilotpid: 905275
[2026-03-17 00:47:20] 2026-03-16 23:47:20,113 [wrapper] Pilot exit status: 0
[2026-03-17 00:47:20] 2026-03-16 23:47:20,121 [wrapper] pandaids: 7056908479
[2026-03-17 00:47:20] 2026-03-16 23:47:20,140 [wrapper] cleanup supervisor_pilot  916427 905276
[2026-03-17 00:47:20] 2026-03-16 23:47:20,143 [wrapper] Test setup, not cleaning
[2026-03-17 00:47:20] 2026-03-16 23:47:20,146 [wrapper] apfmon messages muted
[2026-03-17 00:47:20] 2026-03-16 23:47:20,148 [wrapper] ==== wrapper stdout END ====
[2026-03-17 00:47:20] 2026-03-16 23:47:20,151 [wrapper] ==== wrapper stderr END ====
[2026-03-17 00:47:20]  *** Error codes and diagnostics ***
[2026-03-17 00:47:20]     "exeErrorCode": 0,
[2026-03-17 00:47:20]     "exeErrorDiag": "",
[2026-03-17 00:47:20]     "pilotErrorCode": 0,
[2026-03-17 00:47:20]     "pilotErrorDiag": "",
[2026-03-17 00:47:20]  *** Listing of results directory ***
[2026-03-17 00:47:20] total 481920
[2026-03-17 00:47:20] -rwx------ 1 boinc boinc     36322 Mar 16 14:13 runpilot2-wrapper.sh
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc    585013 Mar 16 14:19 pilot3.tar.gz
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc      5111 Mar 16 14:22 queuedata.json
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc       100 Mar 16 21:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 00:47:20] -rwxr-xr-x 1 boinc boinc      7986 Mar 16 21:47 run_atlas
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc       105 Mar 16 21:47 job.xml
[2026-03-17 00:47:20] -rw-r--r-- 2 boinc boinc 240797112 Mar 16 21:47 EVNT.49133438._000004.pool.root.1
[2026-03-17 00:47:20] -rw-r--r-- 2 boinc boinc    597545 Mar 16 21:47 input.tar.gz
[2026-03-17 00:47:20] -rw-r--r-- 2 boinc boinc     15845 Mar 16 21:47 start_atlas.sh
[2026-03-17 00:47:20] drwxrwx--x 2 boinc boinc      4096 Mar 16 21:47 shared
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc         0 Mar 16 21:47 boinc_setup_complete
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc      6437 Mar 16 21:47 init_data.xml
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc         0 Mar 16 21:47 boinc_lockfile
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc      2628 Mar 16 21:47 pandaJob.out
[2026-03-17 00:47:20] -rw------- 1 boinc boinc   1006429 Mar 16 21:47 agis_schedconf.cvmfs.json
[2026-03-17 00:47:20] -rw------- 1 boinc boinc   1511579 Mar 16 21:47 agis_ddmendpoints.agis.ALL.json
[2026-03-17 00:47:20] -rw------- 1 boinc boinc       427 Mar 16 21:47 workernode_map.json
[2026-03-17 00:47:20] drwx------ 5 boinc boinc      4096 Mar 16 21:47 pilot3
[2026-03-17 00:47:20] -rw------- 1 boinc boinc        95 Mar 17 00:45 pilot_heartbeat.json
[2026-03-17 00:47:20] -rw------- 1 boinc boinc 245032520 Mar 17 00:45 HITS.49176310._000086.pool.root.1
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc       530 Mar 17 00:45 boinc_task_state.xml
[2026-03-17 00:47:20] -rw------- 1 boinc boinc      1019 Mar 17 00:46 memory_monitor_summary.json
[2026-03-17 00:47:20] -rw------- 1 boinc boinc    349431 Mar 17 00:46 log.49176310._000086.job.log.tgz.1
[2026-03-17 00:47:20] -rw------- 1 boinc boinc      6299 Mar 17 00:46 heartbeat.json
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc      8192 Mar 17 00:47 boinc_mmap_file
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc        28 Mar 17 00:47 wrapper_checkpoint.txt
[2026-03-17 00:47:20] -rw------- 1 boinc boinc      4819 Mar 17 00:47 pilotlog.txt
[2026-03-17 00:47:20] -rw------- 1 boinc boinc   1514930 Mar 17 00:47 log.49176310._000086.job.log.1
[2026-03-17 00:47:20] -rw------- 1 boinc boinc       357 Mar 17 00:47 output.list
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc       620 Mar 17 00:47 runtime_log
[2026-03-17 00:47:20] -rw------- 1 boinc boinc   1884160 Mar 17 00:47 result.tar.gz
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc      8917 Mar 17 00:47 runtime_log.err
[2026-03-17 00:47:20] -rw------- 1 boinc boinc       664 Mar 17 00:47 0D0NDmPwMM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYZwLDmOV2fLo.diag
[2026-03-17 00:47:20] -rw-r--r-- 1 boinc boinc     11396 Mar 17 00:47 stderr.txt
[2026-03-17 00:47:20] HITS file was successfully produced:
[2026-03-17 00:47:20] -rw------- 1 boinc boinc 245032520 Mar 17 00:45 shared/HITS.pool.root.1
[2026-03-17 00:47:20]  *** Contents of shared directory: ***
[2026-03-17 00:47:20] total 476896
[2026-03-17 00:47:20] -rw-r--r-- 2 boinc boinc 240797112 Mar 16 21:47 ATLAS.root_0
[2026-03-17 00:47:20] -rw-r--r-- 2 boinc boinc    597545 Mar 16 21:47 input.tar.gz
[2026-03-17 00:47:20] -rw-r--r-- 2 boinc boinc     15845 Mar 16 21:47 start_atlas.sh
[2026-03-17 00:47:20] -rw------- 1 boinc boinc 245032520 Mar 17 00:45 HITS.pool.root.1
[2026-03-17 00:47:20] -rw------- 1 boinc boinc   1884160 Mar 17 00:47 result.tar.gz
00:47:21 (901168): run_atlas exited; CPU time 40994.359130
00:47:21 (901168): called boinc_finish(0)

</stderr_txt>
]]>

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