Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:51:32 (2422634): wrapper (7.7.26015): starting
20:51:32 (2422634): wrapper: running run_atlas (--nthreads 4)
[2026-03-17 20:51:32] Arguments: --nthreads 4
[2026-03-17 20:51:32] Threads: 4
[2026-03-17 20:51:32] Checking for CVMFS
[2026-03-17 20:51:32] No cvmfs_config command found, will try listing directly
[2026-03-17 20:51:32] CVMFS is ok
[2026-03-17 20:51:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 20:51:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 20:51:32] Further information can be found at the LHC@home message board.
[2026-03-17 20:51:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 20:51:32] Checking for apptainer binary...
[2026-03-17 20:51:32] which: no apptainer in ((null))
[2026-03-17 20:51:32] apptainer is not installed, using version from CVMFS
[2026-03-17 20:51:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 20:51:32] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot24/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2026-03-17 20:51:32] apptainer works
[2026-03-17 20:51:32] Set ATHENA_PROC_NUMBER=4
[2026-03-17 20:51:32] Set ATHENA_CORE_NUMBER=4
[2026-03-17 20:51:32] Starting ATLAS job with PandaID=7056899807
[2026-03-17 20:51:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot24/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 04:58:47]  *** The last 200 lines of the pilot log: ***
[2026-03-18 04:58:47] 2026-03-18 03:57:47,382 | INFO     | using path: /var/lib/boinc/var/slot24/slots/1/PanDA_Pilot-7056899807/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 04:58:47] 2026-03-18 03:57:47,383 | INFO     | extracted standard info from prmon json
[2026-03-18 04:58:47] 2026-03-18 03:57:47,383 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 04:58:47] 2026-03-18 03:57:47,383 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 04:58:47] 2026-03-18 03:57:47,383 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 04:58:47] 2026-03-18 03:57:47,384 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 04:58:47] 2026-03-18 03:57:47,398 | INFO     | fitting pss+swap vs Time
[2026-03-18 04:58:47] 2026-03-18 03:57:47,399 | INFO     | sum of square deviations: 33865712179.5
[2026-03-18 04:58:47] 2026-03-18 03:57:47,405 | INFO     | sum of deviations: 3541091601.9999924
[2026-03-18 04:58:47] 2026-03-18 03:57:47,405 | INFO     | mean x: 1773791684.5
[2026-03-18 04:58:47] 2026-03-18 03:57:47,406 | INFO     | mean y: 2337952.0753138075
[2026-03-18 04:58:47] 2026-03-18 03:57:47,406 | INFO     | intersect: -183134563.7361965
[2026-03-18 04:58:47] 2026-03-18 03:57:47,406 | INFO     | chi2: 2.0147588132179006
[2026-03-18 04:58:47] 2026-03-18 03:57:47,407 | INFO     | sum of square deviations: 32814055252.0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,430 | INFO     | sum of deviations: 30922364060.999996
[2026-03-18 04:58:47] 2026-03-18 03:57:47,430 | INFO     | mean x: 1773791532.0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,430 | INFO     | mean y: 2341888.7378435517
[2026-03-18 04:58:47] 2026-03-18 03:57:47,431 | INFO     | intersect: -1669192674.716634
[2026-03-18 04:58:47] 2026-03-18 03:57:47,431 | INFO     | chi2: 1.350343349954953
[2026-03-18 04:58:47] 2026-03-18 03:57:47,431 | INFO     | current chi2=1.350343349954953 (change=32.97741937665318 %)
[2026-03-18 04:58:47] 2026-03-18 03:57:47,432 | INFO     | sum of square deviations: 31784398737.0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,462 | INFO     | sum of deviations: 30331577414.0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,463 | INFO     | mean x: 1773791379.5
[2026-03-18 04:58:47] 2026-03-18 03:57:47,463 | INFO     | mean y: 2341801.235042735
[2026-03-18 04:58:47] 2026-03-18 03:57:47,463 | INFO     | intersect: -1690372004.3264163
[2026-03-18 04:58:47] 2026-03-18 03:57:47,464 | INFO     | chi2: 1.3504474334144148
[2026-03-18 04:58:47] 2026-03-18 03:57:47,464 | INFO     | current chi2=1.3504474334144148 (change=-0.007707925503920181 %)
[2026-03-18 04:58:47] 2026-03-18 03:57:47,464 | INFO     | right removable region: 467
[2026-03-18 04:58:47] 2026-03-18 03:57:47,465 | INFO     | sum of square deviations: 32814055252.0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,470 | INFO     | sum of deviations: -46476706847.0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,470 | INFO     | mean x: 1773791837.0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,471 | INFO     | mean y: 2345152.312896406
[2026-03-18 04:58:47] 2026-03-18 03:57:47,471 | INFO     | intersect: 2514683312.980372
[2026-03-18 04:58:47] 2026-03-18 03:57:47,471 | INFO     | chi2: 0.8095522996936653
[2026-03-18 04:58:47] 2026-03-18 03:57:47,472 | INFO     | current chi2=0.8095522996936653 (change=59.81889770713163 %)
[2026-03-18 04:58:47] 2026-03-18 03:57:47,472 | INFO     | sum of square deviations: 31784398737.0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,478 | INFO     | sum of deviations: -30082331749.499996
[2026-03-18 04:58:47] 2026-03-18 03:57:47,478 | INFO     | mean x: 1773791989.5
[2026-03-18 04:58:47] 2026-03-18 03:57:47,478 | INFO     | mean y: 2342720.574786325
[2026-03-18 04:58:47] 2026-03-18 03:57:47,478 | INFO     | intersect: 1681147455.0695384
[2026-03-18 04:58:47] 2026-03-18 03:57:47,479 | INFO     | chi2: 0.7639698913046331
[2026-03-18 04:58:47] 2026-03-18 03:57:47,479 | INFO     | current chi2=0.7639698913046331 (change=5.630569934305733 %)
[2026-03-18 04:58:47] 2026-03-18 03:57:47,479 | INFO     | left removable region: 20
[2026-03-18 04:58:47] 2026-03-18 03:57:47,480 | INFO     | sum of square deviations: 27694837408.0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,485 | INFO     | sum of deviations: 22460668053.0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,485 | INFO     | mean x: 1773791959.0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,485 | INFO     | mean y: 2342644.903803132
[2026-03-18 04:58:47] 2026-03-18 03:57:47,485 | INFO     | intersect: -1436212555.8092058
[2026-03-18 04:58:47] 2026-03-18 03:57:47,486 | INFO     | chi2: 0.018507910430115744
[2026-03-18 04:58:47] 2026-03-18 03:57:47,486 | INFO     | current memory leak: 0.81 B/s (using 447 data points, chi2=0.02)
[2026-03-18 04:58:47] 2026-03-18 03:57:47,487 | INFO     | could have reported an average CPU frequency of 2575 MHz (20 samples)
[2026-03-18 04:58:47] 2026-03-18 03:57:47,488 | INFO     | ..............................
[2026-03-18 04:58:47] 2026-03-18 03:57:47,488 | INFO     | . Timing measurements:
[2026-03-18 04:58:47] 2026-03-18 03:57:47,488 | INFO     | . get job = 0 s
[2026-03-18 04:58:47] 2026-03-18 03:57:47,488 | INFO     | . initial setup = 6 s
[2026-03-18 04:58:47] 2026-03-18 03:57:47,488 | INFO     | . payload setup = 6 s
[2026-03-18 04:58:47] 2026-03-18 03:57:47,488 | INFO     | . stage-in = 0 s
[2026-03-18 04:58:47] 2026-03-18 03:57:47,488 | INFO     | . payload execution = 29129 s
[2026-03-18 04:58:47] 2026-03-18 03:57:47,488 | INFO     | . stage-out = 1 s
[2026-03-18 04:58:47] 2026-03-18 03:57:47,488 | INFO     | . log creation = 0 s
[2026-03-18 04:58:47] 2026-03-18 03:57:47,489 | INFO     | ..............................
[2026-03-18 04:58:47] 2026-03-18 03:57:47,609 | INFO     | 
[2026-03-18 04:58:47] 2026-03-18 03:57:47,609 | INFO     | job summary report
[2026-03-18 04:58:47] 2026-03-18 03:57:47,609 | INFO     | --------------------------------------------------
[2026-03-18 04:58:47] 2026-03-18 03:57:47,609 | INFO     | PanDA job id: 7056899807
[2026-03-18 04:58:47] 2026-03-18 03:57:47,609 | INFO     | task id: 49176553
[2026-03-18 04:58:47] 2026-03-18 03:57:47,609 | INFO     | errors: (none)
[2026-03-18 04:58:47] 2026-03-18 03:57:47,609 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 04:58:47] 2026-03-18 03:57:47,609 | INFO     | pilot state: finished 
[2026-03-18 04:58:47] 2026-03-18 03:57:47,610 | INFO     | transexitcode: 0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,610 | INFO     | exeerrorcode: 0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,610 | INFO     | exeerrordiag: 
[2026-03-18 04:58:47] 2026-03-18 03:57:47,610 | INFO     | exitcode: 0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,610 | INFO     | exitmsg: OK
[2026-03-18 04:58:47] 2026-03-18 03:57:47,610 | INFO     | cpuconsumptiontime: 106301 s
[2026-03-18 04:58:47] 2026-03-18 03:57:47,610 | INFO     | nevents: 400
[2026-03-18 04:58:47] 2026-03-18 03:57:47,610 | INFO     | neventsw: 0
[2026-03-18 04:58:47] 2026-03-18 03:57:47,610 | INFO     | pid: 2431644
[2026-03-18 04:58:47] 2026-03-18 03:57:47,610 | INFO     | pgrp: 2431644
[2026-03-18 04:58:47] 2026-03-18 03:57:47,610 | INFO     | corecount: 4
[2026-03-18 04:58:47] 2026-03-18 03:57:47,610 | INFO     | event service: False
[2026-03-18 04:58:47] 2026-03-18 03:57:47,610 | INFO     | sizes: {0: 2280109, 1: 2280343, 11: 2280343, 29140: 2318523, 29142: 2327599, 29144: 2327737}
[2026-03-18 04:58:47] 2026-03-18 03:57:47,611 | INFO     | --------------------------------------------------
[2026-03-18 04:58:47] 2026-03-18 03:57:47,611 | INFO     | 
[2026-03-18 04:58:47] 2026-03-18 03:57:47,611 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot24/slots/1
[2026-03-18 04:58:47] 2026-03-18 03:57:47,651 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,652 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,652 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,652 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,652 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,652 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,652 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,652 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,652 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,653 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,653 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,653 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,653 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,653 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,653 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,653 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,653 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,653 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 04:58:47] 2026-03-18 03:57:47,653 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,653 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 04:58:47] 2026-03-18 03:57:47,654 | INFO     | job 7056899807 has completed (purged errors)
[2026-03-18 04:58:47] 2026-03-18 03:57:47,654 | INFO     | overall cleanup function is called
[2026-03-18 04:58:47] 2026-03-18 03:57:48,689 | INFO     | --- collectZombieJob: --- 10, [2431644]
[2026-03-18 04:58:47] 2026-03-18 03:57:48,690 | INFO     | zombie collector waiting for pid 2431644
[2026-03-18 04:58:47] 2026-03-18 03:57:48,690 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 04:58:47] 2026-03-18 03:57:48,690 | INFO     | collected zombie processes
[2026-03-18 04:58:47] 2026-03-18 03:57:48,690 | INFO     | will attempt to kill all subprocesses of pid=2431644
[2026-03-18 04:58:47] 2026-03-18 03:57:48,833 | INFO     | PID=2426799 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-18 04:58:47] 2026-03-18 03:57:48,833 | INFO     | .. there are 12 such processes running
[2026-03-18 04:58:47] 2026-03-18 03:57:49,282 | INFO     | process IDs to be killed: [2431644] (in reverse order)
[2026-03-18 04:58:47] 2026-03-18 03:57:49,462 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 04:58:47] 2026-03-18 03:57:49,463 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 04:58:47] 2026-03-18 03:57:49,476 | INFO     | did not find any defunct processes belonging to 2431644
[2026-03-18 04:58:47] 2026-03-18 03:57:49,493 | INFO     | did not find any defunct processes belonging to 2431644
[2026-03-18 04:58:47] 2026-03-18 03:57:49,493 | INFO     | ready for new job
[2026-03-18 04:58:47] 2026-03-18 03:57:49,493 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 04:58:47] 2026-03-18 03:57:49,497 | INFO     | **************************************
[2026-03-18 04:58:47] 2026-03-18 03:57:49,497 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 04:58:47] 2026-03-18 03:57:49,497 | INFO     | **************************************
[2026-03-18 04:58:47] 2026-03-18 03:57:49,497 | INFO     | 
[2026-03-18 04:58:47] 2026-03-18 03:57:49,501 | INFO     | architecture information:
[2026-03-18 04:58:47] 2026-03-18 03:57:49,504 | INFO     | executing command: cat /etc/os-release
[2026-03-18 04:58:47] 2026-03-18 03:57:49,538 | INFO     | cat /etc/os-release:
[2026-03-18 04:58:47] NAME="CentOS Linux"
[2026-03-18 04:58:47] VERSION="7 (Core)"
[2026-03-18 04:58:47] ID="centos"
[2026-03-18 04:58:47] ID_LIKE="rhel fedora"
[2026-03-18 04:58:47] VERSION_ID="7"
[2026-03-18 04:58:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 04:58:47] ANSI_COLOR="0;31"
[2026-03-18 04:58:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 04:58:47] HOME_URL="https://www.centos.org/"
[2026-03-18 04:58:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 04:58:47] 
[2026-03-18 04:58:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 04:58:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 04:58:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 04:58:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 04:58:47] 
[2026-03-18 04:58:47] 2026-03-18 03:57:49,539 | INFO     | **************************************
[2026-03-18 04:58:47] 2026-03-18 03:57:50,042 | INFO     | executing command: df -mP /var/lib/boinc/var/slot24/slots/1
[2026-03-18 04:58:47] 2026-03-18 03:57:50,062 | INFO     | sufficient remaining disk space (20397948928 B)
[2026-03-18 04:58:47] 2026-03-18 03:57:50,062 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 04:58:47] 2026-03-18 03:57:50,063 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 04:58:47] 2026-03-18 03:57:50,063 | INFO     | update_server=False
[2026-03-18 04:58:47] 2026-03-18 03:57:50,063 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 04:58:47] 2026-03-18 03:57:50,146 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-18 04:58:47] 2026-03-18 03:57:50,147 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-18 04:58:47] 2026-03-18 03:57:50,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 04:58:47] 2026-03-18 03:57:50,147 | INFO     | will abort loop
[2026-03-18 04:58:47] 2026-03-18 03:57:50,226 | INFO     | all job control threads have been joined
[2026-03-18 04:58:47] 2026-03-18 03:57:50,597 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 04:58:47] 2026-03-18 03:57:51,042 | INFO     | all data control threads have been joined
[2026-03-18 04:58:47] 2026-03-18 03:57:51,068 | INFO     | [job] retrieve thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:51,152 | INFO     | [job] job monitor thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:51,223 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 04:58:47] 2026-03-18 03:57:51,232 | INFO     | [job] control thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:51,268 | INFO     | all payload control threads have been joined
[2026-03-18 04:58:47] 2026-03-18 03:57:51,361 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:51,521 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:51,931 | INFO     | [data] copytool_in thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:51,938 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:51,960 | INFO     | [job] validate thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:52,048 | INFO     | [data] control thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:52,224 | INFO     | [payload] failed_post thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:52,274 | INFO     | [payload] control thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:52,407 | INFO     | [payload] validate_post thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:52,561 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:52,603 | INFO     | [data] copytool_out thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:52,623 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 04:58:47] 2026-03-18 03:57:53,628 | INFO     | [job] queue monitor thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:57:55,238 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 04:58:47] 2026-03-18 03:58:21,412 | INFO     | PID=2426799 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 04:58:47] 2026-03-18 03:58:21,412 | INFO     | .. there are 12 such processes running
[2026-03-18 04:58:47] 2026-03-18 03:58:21,412 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 04:58:47] 2026-03-18 03:58:21,412 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 04:58:47] 2026-03-18 03:58:21,412 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 04:58:47] 2026-03-18 03:58:40,813 | INFO     | [monitor] cgroup control has ended
[2026-03-18 04:58:47] 2026-03-18 03:58:42,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23422076991296)>', '<ExcThread(monitor, started 23421840013056)>']
[2026-03-18 04:58:47] 2026-03-18 03:58:42,518 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 04:58:47] 2026-03-18 03:58:42,519 | INFO     | [monitor] control thread has ended
[2026-03-18 04:58:47] 2026-03-18 03:58:47,128 | INFO     | all workflow threads have been joined
[2026-03-18 04:58:47] 2026-03-18 03:58:47,129 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 04:58:47] 2026-03-18 03:58:47,129 | INFO     | traces error code: 0
[2026-03-18 04:58:47] 2026-03-18 03:58:47,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 04:58:47] 2026-03-18 03:58:47,323 [wrapper] ==== pilot stdout END ====
[2026-03-18 04:58:47] 2026-03-18 03:58:47,326 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 04:58:47] 2026-03-18 03:58:47,329 [wrapper] pilotpid: 2426799
[2026-03-18 04:58:47] 2026-03-18 03:58:47,332 [wrapper] Pilot exit status: 0
[2026-03-18 04:58:47] 2026-03-18 03:58:47,392 [wrapper] pandaids: 7056899807
[2026-03-18 04:58:47] 2026-03-18 03:58:47,515 [wrapper] cleanup supervisor_pilot 2840281 2426800
[2026-03-18 04:58:47] 2026-03-18 03:58:47,518 [wrapper] Test setup, not cleaning
[2026-03-18 04:58:47] 2026-03-18 03:58:47,523 [wrapper] apfmon messages muted
[2026-03-18 04:58:47] 2026-03-18 03:58:47,547 [wrapper] ==== wrapper stdout END ====
[2026-03-18 04:58:47] 2026-03-18 03:58:47,558 [wrapper] ==== wrapper stderr END ====
[2026-03-18 04:58:47]  *** Error codes and diagnostics ***
[2026-03-18 04:58:47]     "exeErrorCode": 0,
[2026-03-18 04:58:47]     "exeErrorDiag": "",
[2026-03-18 04:58:47]     "pilotErrorCode": 0,
[2026-03-18 04:58:47]     "pilotErrorDiag": "",
[2026-03-18 04:58:47]  *** Listing of results directory ***
[2026-03-18 04:58:47] total 477920
[2026-03-18 04:58:47] -rw-r--r--. 1 boinc boinc    585013 Mar 16 13:24 pilot3.tar.gz
[2026-03-18 04:58:47] -rwx------. 1 boinc boinc     36322 Mar 16 14:09 runpilot2-wrapper.sh
[2026-03-18 04:58:47] -rw-r--r--. 1 boinc boinc      5111 Mar 16 14:12 queuedata.json
[2026-03-18 04:58:47] -rw-r--r--. 1 boinc boinc       100 Mar 17 20:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 04:58:47] -rwxr-xr-x. 1 boinc boinc      7986 Mar 17 20:32 run_atlas
[2026-03-18 04:58:47] -rw-r--r--. 1 boinc boinc       105 Mar 17 20:32 job.xml
[2026-03-18 04:58:47] -rw-r--r--. 2 boinc boinc 239732479 Mar 17 20:51 EVNT.49134354._000010.pool.root.1
[2026-03-18 04:58:47] -rw-r--r--. 1 boinc boinc      6564 Mar 17 20:51 init_data.xml
[2026-03-18 04:58:47] -rw-r--r--. 2 boinc boinc     15845 Mar 17 20:51 start_atlas.sh
[2026-03-18 04:58:47] drwxrwx--x. 2 boinc boinc      4096 Mar 17 20:51 shared
[2026-03-18 04:58:47] -rw-r--r--. 2 boinc boinc    597541 Mar 17 20:51 input.tar.gz
[2026-03-18 04:58:47] -rw-r--r--. 1 boinc boinc         0 Mar 17 20:51 boinc_lockfile
[2026-03-18 04:58:47] -rw-r--r--. 1 boinc boinc      2616 Mar 17 20:51 pandaJob.out
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc   1010308 Mar 17 20:51 agis_schedconf.cvmfs.json
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc       451 Mar 17 20:51 workernode_map.json
[2026-03-18 04:58:47] drwx------. 5 boinc boinc      4096 Mar 17 20:51 pilot3
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc 236446494 Mar 18 04:56 HITS.49176553._000227.pool.root.1
[2026-03-18 04:58:47] -rw-r--r--. 1 boinc boinc       530 Mar 18 04:57 boinc_task_state.xml
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc        95 Mar 18 04:57 pilot_heartbeat.json
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc      1034 Mar 18 04:57 memory_monitor_summary.json
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc   1511579 Mar 18 04:57 agis_ddmendpoints.agis.ALL.json
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc    595576 Mar 18 04:57 log.49176553._000227.job.log.tgz.1
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc      6398 Mar 18 04:57 heartbeat.json
[2026-03-18 04:58:47] -rw-r--r--. 1 boinc boinc        28 Mar 18 04:58 wrapper_checkpoint.txt
[2026-03-18 04:58:47] -rw-r--r--. 1 boinc boinc      8192 Mar 18 04:58 boinc_mmap_file
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc      5015 Mar 18 04:58 pilotlog.txt
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc   4039195 Mar 18 04:58 log.49176553._000227.job.log.1
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc       357 Mar 18 04:58 output.list
[2026-03-18 04:58:47] -rw-r--r--. 1 boinc boinc       620 Mar 18 04:58 runtime_log
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc   4648960 Mar 18 04:58 result.tar.gz
[2026-03-18 04:58:47] -rw-r--r--. 1 boinc boinc      9205 Mar 18 04:58 runtime_log.err
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc       668 Mar 18 04:58 TRyNDm5rMM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmfYwLDmC8eRIm.diag
[2026-03-18 04:58:47] -rw-r--r--. 1 boinc boinc     20941 Mar 18 04:58 stderr.txt
[2026-03-18 04:58:47] HITS file was successfully produced:
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc 236446494 Mar 18 04:56 shared/HITS.pool.root.1
[2026-03-18 04:58:47]  *** Contents of shared directory: ***
[2026-03-18 04:58:47] total 470172
[2026-03-18 04:58:47] -rw-r--r--. 2 boinc boinc 239732479 Mar 17 20:51 ATLAS.root_0
[2026-03-18 04:58:47] -rw-r--r--. 2 boinc boinc     15845 Mar 17 20:51 start_atlas.sh
[2026-03-18 04:58:47] -rw-r--r--. 2 boinc boinc    597541 Mar 17 20:51 input.tar.gz
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc 236446494 Mar 18 04:56 HITS.pool.root.1
[2026-03-18 04:58:47] -rw-------. 1 boinc boinc   4648960 Mar 18 04:58 result.tar.gz
04:58:49 (2422634): run_atlas exited; CPU time 107724.130307
04:58:49 (2422634): called boinc_finish(0)

</stderr_txt>
]]>

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