Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:41:50 (3357833): wrapper (7.7.26015): starting
13:41:50 (3357833): wrapper: running run_atlas (--nthreads 4)
[2026-03-18 13:41:50] Arguments: --nthreads 4
[2026-03-18 13:41:50] Threads: 4
[2026-03-18 13:41:50] Checking for CVMFS
[2026-03-18 13:41:50] No cvmfs_config command found, will try listing directly
[2026-03-18 13:41:50] CVMFS is ok
[2026-03-18 13:41:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 13:41:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 13:41:50] Further information can be found at the LHC@home message board.
[2026-03-18 13:41:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 13:41:50] Checking for apptainer binary...
[2026-03-18 13:41:50] which: no apptainer in ((null))
[2026-03-18 13:41:50] apptainer is not installed, using version from CVMFS
[2026-03-18 13:41:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 13:41:51] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot116/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut24.grid.cesnet.cz
[2026-03-18 13:41:51] apptainer works
[2026-03-18 13:41:51] Set ATHENA_PROC_NUMBER=4
[2026-03-18 13:41:51] Set ATHENA_CORE_NUMBER=4
[2026-03-18 13:41:51] Starting ATLAS job with PandaID=7056897916
[2026-03-18 13:41:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot116/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:06:11 (4013693): wrapper (7.7.26015): starting
16:06:11 (4013693): wrapper: running run_atlas (--nthreads 4)
[2026-03-18 16:06:11] Arguments: --nthreads 4
[2026-03-18 16:06:11] Threads: 4
[2026-03-18 16:06:11] This job has been restarted, cleaning up previous attempt
[2026-03-18 16:06:11] Checking for CVMFS
[2026-03-18 16:06:11] No cvmfs_config command found, will try listing directly
[2026-03-18 16:06:11] CVMFS is ok
[2026-03-18 16:06:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 16:06:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 16:06:11] Further information can be found at the LHC@home message board.
[2026-03-18 16:06:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 16:06:11] Checking for apptainer binary...
[2026-03-18 16:06:11] which: no apptainer in ((null))
[2026-03-18 16:06:11] apptainer is not installed, using version from CVMFS
[2026-03-18 16:06:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 16:06:11] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot116/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut24.grid.cesnet.cz
[2026-03-18 16:06:11] apptainer works
[2026-03-18 16:06:11] Set ATHENA_PROC_NUMBER=4
[2026-03-18 16:06:11] Set ATHENA_CORE_NUMBER=4
[2026-03-18 16:06:11] Starting ATLAS job with PandaID=7056897916
[2026-03-18 16:06:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot116/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 19:28:46]  *** The last 200 lines of the pilot log: ***
[2026-03-18 19:28:46] 2026-03-18 18:27:48,968 | INFO     | job 7056897916 has state=finished
[2026-03-18 19:28:46] 2026-03-18 18:27:48,968 | INFO     | preparing for final server update for job 7056897916 in state='finished'
[2026-03-18 19:28:46] 2026-03-18 18:27:48,968 | INFO     | reading metadata from: /var/lib/boinc/var/slot116/slots/1/PanDA_Pilot-7056897916/jobReport.json
[2026-03-18 19:28:46] 2026-03-18 18:27:48,969 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot116/slots/1/workernode_map.json
[2026-03-18 19:28:46] 2026-03-18 18:27:48,970 | INFO     | this job has now completed (state=finished)
[2026-03-18 19:28:46] 2026-03-18 18:27:48,970 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-18 19:28:46] 2026-03-18 18:27:48,970 | INFO     | log transfer has been attempted: DONE
[2026-03-18 19:28:46] 2026-03-18 18:27:48,970 | INFO     | job 7056897916 has finished - writing final server update
[2026-03-18 19:28:46] 2026-03-18 18:27:48,970 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3987683/.job.ad'
[2026-03-18 19:28:46] 2026-03-18 18:27:48,970 | INFO     | total number of processed events: 400 (read)
[2026-03-18 19:28:46] 2026-03-18 18:27:49,044 | INFO     | using path: /var/lib/boinc/var/slot116/slots/1/PanDA_Pilot-7056897916/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 19:28:46] 2026-03-18 18:27:49,045 | INFO     | extracted standard info from prmon json
[2026-03-18 19:28:46] 2026-03-18 18:27:49,045 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 19:28:46] 2026-03-18 18:27:49,045 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 19:28:46] 2026-03-18 18:27:49,045 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 19:28:46] 2026-03-18 18:27:49,045 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 19:28:46] 2026-03-18 18:27:49,047 | INFO     | fitting pss+swap vs Time
[2026-03-18 19:28:46] 2026-03-18 18:27:49,047 | INFO     | sum of square deviations: 2406926989.5
[2026-03-18 19:28:46] 2026-03-18 18:27:49,052 | INFO     | sum of deviations: 22032144730.499996
[2026-03-18 19:28:46] 2026-03-18 18:27:49,052 | INFO     | mean x: 1773852411.5
[2026-03-18 19:28:46] 2026-03-18 18:27:49,052 | INFO     | mean y: 2332451.8636363638
[2026-03-18 19:28:46] 2026-03-18 18:27:49,052 | INFO     | intersect: -16234875087.544546
[2026-03-18 19:28:46] 2026-03-18 18:27:49,052 | INFO     | chi2: 1.0922760442729307
[2026-03-18 19:28:46] 2026-03-18 18:27:49,053 | INFO     | sum of square deviations: 2229146912.0
[2026-03-18 19:28:46] 2026-03-18 18:27:49,053 | INFO     | sum of deviations: 21366340802.000008
[2026-03-18 19:28:46] 2026-03-18 18:27:49,053 | INFO     | mean x: 1773852259.0
[2026-03-18 19:28:46] 2026-03-18 18:27:49,053 | INFO     | mean y: 2331880.6165803107
[2026-03-18 19:28:46] 2026-03-18 18:27:49,053 | INFO     | intersect: -17000016279.643024
[2026-03-18 19:28:46] 2026-03-18 18:27:49,054 | INFO     | chi2: 1.0927844011714107
[2026-03-18 19:28:46] 2026-03-18 18:27:49,054 | INFO     | current chi2=1.0927844011714107 (change=-0.046541064518030466 %)
[2026-03-18 19:28:46] 2026-03-18 18:27:49,054 | INFO     | right removable region: 192
[2026-03-18 19:28:46] 2026-03-18 18:27:49,054 | INFO     | sum of square deviations: 2229146912.0
[2026-03-18 19:28:46] 2026-03-18 18:27:49,054 | INFO     | sum of deviations: 2239443712.0
[2026-03-18 19:28:46] 2026-03-18 18:27:49,054 | INFO     | mean x: 1773852564.0
[2026-03-18 19:28:46] 2026-03-18 18:27:49,054 | INFO     | mean y: 2349169.0207253885
[2026-03-18 19:28:46] 2026-03-18 18:27:49,054 | INFO     | intersect: -1779697114.7303913
[2026-03-18 19:28:46] 2026-03-18 18:27:49,055 | INFO     | chi2: 0.0008394430205944964
[2026-03-18 19:28:46] 2026-03-18 18:27:49,055 | INFO     | current chi2=0.0008394430205944964 (change=99.92314735592748 %)
[2026-03-18 19:28:46] 2026-03-18 18:27:49,055 | INFO     | sum of square deviations: 2060343747.0
[2026-03-18 19:28:46] 2026-03-18 18:27:49,055 | INFO     | sum of deviations: 1903515065.0
[2026-03-18 19:28:46] 2026-03-18 18:27:49,055 | INFO     | mean x: 1773852716.5
[2026-03-18 19:28:46] 2026-03-18 18:27:49,055 | INFO     | mean y: 2349470.64893617
[2026-03-18 19:28:46] 2026-03-18 18:27:49,055 | INFO     | intersect: -1636481609.778986
[2026-03-18 19:28:46] 2026-03-18 18:27:49,056 | INFO     | chi2: 0.0007832744307307486
[2026-03-18 19:28:46] 2026-03-18 18:27:49,056 | INFO     | current chi2=0.0007832744307307486 (change=6.6911736098501375 %)
[2026-03-18 19:28:46] 2026-03-18 18:27:49,056 | INFO     | left removable region: 20
[2026-03-18 19:28:46] 2026-03-18 18:27:49,056 | INFO     | sum of square deviations: 1577789583.0
[2026-03-18 19:28:46] 2026-03-18 18:27:49,056 | INFO     | sum of deviations: 1969683503.4999998
[2026-03-18 19:28:46] 2026-03-18 18:27:49,056 | INFO     | mean x: 1773852838.5
[2026-03-18 19:28:46] 2026-03-18 18:27:49,056 | INFO     | mean y: 2349042.1104651163
[2026-03-18 19:28:46] 2026-03-18 18:27:49,056 | INFO     | intersect: -2212096224.403948
[2026-03-18 19:28:46] 2026-03-18 18:27:49,057 | INFO     | chi2: 0.00047083270813563365
[2026-03-18 19:28:46] 2026-03-18 18:27:49,057 | INFO     | current memory leak: 1.25 B/s (using 172 data points, chi2=0.00)
[2026-03-18 19:28:46] 2026-03-18 18:27:49,057 | INFO     | could have reported an average CPU frequency of 3571 MHz (10 samples)
[2026-03-18 19:28:46] 2026-03-18 18:27:49,057 | INFO     | ..............................
[2026-03-18 19:28:46] 2026-03-18 18:27:49,057 | INFO     | . Timing measurements:
[2026-03-18 19:28:46] 2026-03-18 18:27:49,057 | INFO     | . get job = 0 s
[2026-03-18 19:28:46] 2026-03-18 18:27:49,057 | INFO     | . initial setup = 0 s
[2026-03-18 19:28:46] 2026-03-18 18:27:49,057 | INFO     | . payload setup = 7 s
[2026-03-18 19:28:46] 2026-03-18 18:27:49,057 | INFO     | . stage-in = 0 s
[2026-03-18 19:28:46] 2026-03-18 18:27:49,057 | INFO     | . payload execution = 12063 s
[2026-03-18 19:28:46] 2026-03-18 18:27:49,057 | INFO     | . stage-out = 1 s
[2026-03-18 19:28:46] 2026-03-18 18:27:49,057 | INFO     | . log creation = 0 s
[2026-03-18 19:28:46] 2026-03-18 18:27:49,057 | INFO     | ..............................
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | 
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | job summary report
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | --------------------------------------------------
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | PanDA job id: 7056897916
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | task id: 49176397
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | errors: (none)
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | pilot state: finished 
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | transexitcode: 0
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | exeerrorcode: 0
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | exeerrordiag: 
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | exitcode: 0
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | exitmsg: OK
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | cpuconsumptiontime: 46180 s
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | nevents: 400
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | neventsw: 0
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | pid: 4029620
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | pgrp: 4029620
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | corecount: 4
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | event service: False
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | sizes: {0: 2280322, 11: 2280322, 12074: 2310340, 12076: 2319362, 12078: 2319612}
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | --------------------------------------------------
[2026-03-18 19:28:46] 2026-03-18 18:27:49,189 | INFO     | 
[2026-03-18 19:28:46] 2026-03-18 18:27:49,190 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot116/slots/1
[2026-03-18 19:28:46] 2026-03-18 18:27:49,288 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,288 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,288 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,288 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,288 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,288 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | job 7056897916 has completed (purged errors)
[2026-03-18 19:28:46] 2026-03-18 18:27:49,289 | INFO     | overall cleanup function is called
[2026-03-18 19:28:46] 2026-03-18 18:27:50,296 | INFO     | --- collectZombieJob: --- 10, [4029620]
[2026-03-18 19:28:46] 2026-03-18 18:27:50,296 | INFO     | zombie collector waiting for pid 4029620
[2026-03-18 19:28:46] 2026-03-18 18:27:50,296 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 19:28:46] 2026-03-18 18:27:50,296 | INFO     | collected zombie processes
[2026-03-18 19:28:46] 2026-03-18 18:27:50,296 | INFO     | will attempt to kill all subprocesses of pid=4029620
[2026-03-18 19:28:46] 2026-03-18 18:27:51,265 | INFO     | process IDs to be killed: [4029620] (in reverse order)
[2026-03-18 19:28:46] 2026-03-18 18:27:51,712 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 19:28:46] 2026-03-18 18:27:51,712 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 19:28:46] 2026-03-18 18:27:51,742 | INFO     | did not find any defunct processes belonging to 4029620
[2026-03-18 19:28:46] 2026-03-18 18:27:51,771 | INFO     | did not find any defunct processes belonging to 4029620
[2026-03-18 19:28:46] 2026-03-18 18:27:51,772 | INFO     | ready for new job
[2026-03-18 19:28:46] 2026-03-18 18:27:51,772 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 19:28:46] 2026-03-18 18:27:51,773 | INFO     | **************************************
[2026-03-18 19:28:46] 2026-03-18 18:27:51,773 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 19:28:46] 2026-03-18 18:27:51,773 | INFO     | **************************************
[2026-03-18 19:28:46] 2026-03-18 18:27:51,773 | INFO     | 
[2026-03-18 19:28:46] 2026-03-18 18:27:51,779 | INFO     | architecture information:
[2026-03-18 19:28:46] 2026-03-18 18:27:51,779 | INFO     | executing command: cat /etc/os-release
[2026-03-18 19:28:46] 2026-03-18 18:27:51,856 | INFO     | cat /etc/os-release:
[2026-03-18 19:28:46] NAME="CentOS Linux"
[2026-03-18 19:28:46] VERSION="7 (Core)"
[2026-03-18 19:28:46] ID="centos"
[2026-03-18 19:28:46] ID_LIKE="rhel fedora"
[2026-03-18 19:28:46] VERSION_ID="7"
[2026-03-18 19:28:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 19:28:46] ANSI_COLOR="0;31"
[2026-03-18 19:28:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 19:28:46] HOME_URL="https://www.centos.org/"
[2026-03-18 19:28:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 19:28:46] 
[2026-03-18 19:28:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 19:28:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 19:28:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 19:28:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 19:28:46] 
[2026-03-18 19:28:46] 2026-03-18 18:27:51,857 | INFO     | **************************************
[2026-03-18 19:28:46] 2026-03-18 18:27:52,362 | INFO     | executing command: df -mP /var/lib/boinc/var/slot116/slots/1
[2026-03-18 19:28:46] 2026-03-18 18:27:52,415 | INFO     | sufficient remaining disk space (28272754688 B)
[2026-03-18 19:28:46] 2026-03-18 18:27:52,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 19:28:46] 2026-03-18 18:27:52,415 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 19:28:46] 2026-03-18 18:27:52,415 | INFO     | update_server=False
[2026-03-18 19:28:46] 2026-03-18 18:27:52,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 19:28:46] 2026-03-18 18:27:52,417 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 19:28:46] 2026-03-18 18:27:52,417 | INFO     | aborting loop
[2026-03-18 19:28:46] 2026-03-18 18:27:52,417 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 19:28:46] 2026-03-18 18:27:52,657 | INFO     | all data control threads have been joined
[2026-03-18 19:28:46] 2026-03-18 18:27:53,253 | INFO     | all payload control threads have been joined
[2026-03-18 19:28:46] 2026-03-18 18:27:53,422 | INFO     | [job] retrieve thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:53,423 | INFO     | [job] job monitor thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:53,450 | INFO     | all job control threads have been joined
[2026-03-18 19:28:46] 2026-03-18 18:27:53,621 | INFO     | [data] copytool_in thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:53,665 | INFO     | [data] control thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:53,867 | INFO     | [payload] failed_post thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:54,098 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:54,167 | INFO     | [job] validate thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:54,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 19:28:46] 2026-03-18 18:27:54,259 | INFO     | [payload] control thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:54,425 | INFO     | [data] copytool_out thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:54,456 | INFO     | [job] control thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:54,568 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:54,577 | INFO     | [payload] validate_post thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:54,743 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:54,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 19:28:46] 2026-03-18 18:27:55,212 | INFO     | [job] queue monitor thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:27:58,987 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:28:03,059 | INFO     | job.realtimelogging is not enabled
[2026-03-18 19:28:46] 2026-03-18 18:28:04,065 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 19:28:46] 2026-03-18 18:28:22,593 | INFO     | PID=4021937 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 19:28:46] 2026-03-18 18:28:22,593 | INFO     | .. there are 48 such processes running
[2026-03-18 19:28:46] 2026-03-18 18:28:22,593 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 19:28:46] 2026-03-18 18:28:22,593 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 19:28:46] 2026-03-18 18:28:22,593 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 19:28:46] 2026-03-18 18:28:40,199 | INFO     | [monitor] cgroup control has ended
[2026-03-18 19:28:46] 2026-03-18 18:28:40,519 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22764908238656)>', '<ExcThread(monitor, started 22764597532416)>']
[2026-03-18 19:28:46] 2026-03-18 18:28:40,702 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 19:28:46] 2026-03-18 18:28:40,702 | INFO     | [monitor] control thread has ended
[2026-03-18 19:28:46] 2026-03-18 18:28:45,545 | INFO     | all workflow threads have been joined
[2026-03-18 19:28:46] 2026-03-18 18:28:45,545 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 19:28:46] 2026-03-18 18:28:45,545 | INFO     | traces error code: 0
[2026-03-18 19:28:46] 2026-03-18 18:28:45,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 19:28:46] 2026-03-18 18:28:45,787 [wrapper] ==== pilot stdout END ====
[2026-03-18 19:28:46] 2026-03-18 18:28:45,802 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 19:28:46] 2026-03-18 18:28:45,807 [wrapper] pilotpid: 4021937
[2026-03-18 19:28:46] 2026-03-18 18:28:45,811 [wrapper] Pilot exit status: 0
[2026-03-18 19:28:46] 2026-03-18 18:28:45,865 [wrapper] pandaids: 7056897916 7056897916
[2026-03-18 19:28:46] 2026-03-18 18:28:46,042 [wrapper] cleanup supervisor_pilot  870538 4021938
[2026-03-18 19:28:46] 2026-03-18 18:28:46,043 [wrapper] Test setup, not cleaning
[2026-03-18 19:28:46] 2026-03-18 18:28:46,046 [wrapper] apfmon messages muted
[2026-03-18 19:28:46] 2026-03-18 18:28:46,047 [wrapper] ==== wrapper stdout END ====
[2026-03-18 19:28:46] 2026-03-18 18:28:46,050 [wrapper] ==== wrapper stderr END ====
[2026-03-18 19:28:46]  *** Error codes and diagnostics ***
[2026-03-18 19:28:46]     "exeErrorCode": 0,
[2026-03-18 19:28:46]     "exeErrorDiag": "",
[2026-03-18 19:28:46]     "pilotErrorCode": 0,
[2026-03-18 19:28:46]     "pilotErrorDiag": "",
[2026-03-18 19:28:46]  *** Listing of results directory ***
[2026-03-18 19:28:46] total 722180
[2026-03-18 19:28:46] drwx------. 5 boinc boinc      4096 Mar 10 17:00 pilot3
[2026-03-18 19:28:46] -rw-r--r--. 1 boinc boinc    585013 Mar 16 13:24 pilot3.tar.gz
[2026-03-18 19:28:46] -rwx------. 1 boinc boinc     36322 Mar 16 14:07 runpilot2-wrapper.sh
[2026-03-18 19:28:46] -rw-r--r--. 1 boinc boinc      5111 Mar 16 14:10 queuedata.json
[2026-03-18 19:28:46] -rw-r--r--. 1 boinc boinc       100 Mar 18 13:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 19:28:46] -rwxr-xr-x. 1 boinc boinc      7986 Mar 18 13:41 run_atlas
[2026-03-18 19:28:46] -rw-r--r--. 1 boinc boinc       105 Mar 18 13:41 job.xml
[2026-03-18 19:28:46] -rw-r--r--. 3 boinc boinc 245847887 Mar 18 13:41 EVNT.49133815._000023.pool.root.1
[2026-03-18 19:28:46] -rw-r--r--. 3 boinc boinc 245847887 Mar 18 13:41 ATLAS.root_0
[2026-03-18 19:28:46] -rw-r--r--. 2 boinc boinc     15845 Mar 18 13:41 start_atlas.sh
[2026-03-18 19:28:46] drwxrwx--x. 2 boinc boinc      4096 Mar 18 13:41 shared
[2026-03-18 19:28:46] -rw-r--r--. 2 boinc boinc    597559 Mar 18 13:41 input.tar.gz
[2026-03-18 19:28:46] -rw-r--r--. 1 boinc boinc         0 Mar 18 13:41 boinc_lockfile
[2026-03-18 19:28:46] -rw-r--r--. 1 boinc boinc      6715 Mar 18 16:06 init_data.xml
[2026-03-18 19:28:46] -rw-r--r--. 1 boinc boinc      2626 Mar 18 16:06 pandaJob.out
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc   1011294 Mar 18 16:06 agis_schedconf.cvmfs.json
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc       445 Mar 18 16:06 workernode_map.json
[2026-03-18 19:28:46] -rw-r--r--. 1 boinc boinc       529 Mar 18 19:27 boinc_task_state.xml
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc 239727204 Mar 18 19:27 HITS.49176397._000574.pool.root.1
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc        96 Mar 18 19:27 pilot_heartbeat.json
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc      1032 Mar 18 19:27 memory_monitor_summary.json
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc   1511579 Mar 18 19:27 agis_ddmendpoints.agis.ALL.json
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc    383818 Mar 18 19:27 log.49176397._000574.job.log.tgz.1
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc      6353 Mar 18 19:27 heartbeat.json
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc      4902 Mar 18 19:28 pilotlog.txt
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc   1687000 Mar 18 19:28 log.49176397._000574.job.log.1
[2026-03-18 19:28:46] -rw-r--r--. 1 boinc boinc      8192 Mar 18 19:28 boinc_mmap_file
[2026-03-18 19:28:46] -rw-r--r--. 1 boinc boinc        27 Mar 18 19:28 wrapper_checkpoint.txt
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc       357 Mar 18 19:28 output.list
[2026-03-18 19:28:46] -rw-r--r--. 1 boinc boinc       620 Mar 18 19:28 runtime_log
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc   2088960 Mar 18 19:28 result.tar.gz
[2026-03-18 19:28:46] -rw-r--r--. 1 boinc boinc      9299 Mar 18 19:28 runtime_log.err
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc       790 Mar 18 19:28 PhOKDmrqMM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYRwLDmtoDJ2m.diag
[2026-03-18 19:28:46] -rw-r--r--. 1 boinc boinc     23021 Mar 18 19:28 stderr.txt
[2026-03-18 19:28:46] HITS file was successfully produced:
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc 239727204 Mar 18 19:27 shared/HITS.pool.root.1
[2026-03-18 19:28:46]  *** Contents of shared directory: ***
[2026-03-18 19:28:46] total 476848
[2026-03-18 19:28:46] -rw-r--r--. 3 boinc boinc 245847887 Mar 18 13:41 ATLAS.root_0
[2026-03-18 19:28:46] -rw-r--r--. 2 boinc boinc     15845 Mar 18 13:41 start_atlas.sh
[2026-03-18 19:28:46] -rw-r--r--. 2 boinc boinc    597559 Mar 18 13:41 input.tar.gz
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc 239727204 Mar 18 19:27 HITS.pool.root.1
[2026-03-18 19:28:46] -rw-------. 1 boinc boinc   2088960 Mar 18 19:28 result.tar.gz
19:28:48 (4013693): run_atlas exited; CPU time 46761.977563
19:28:48 (4013693): called boinc_finish(0)

</stderr_txt>
]]>

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