Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:18:54 (1642801): wrapper (7.7.26015): starting
17:18:54 (1642801): wrapper: running run_atlas (--nthreads 3)
[2026-03-16 17:18:54] Arguments: --nthreads 3
[2026-03-16 17:18:54] Threads: 3
[2026-03-16 17:18:54] Checking for CVMFS
[2026-03-16 17:18:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-16 17:18:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-16 17:18:55] Running cvmfs_config stat atlas.cern.ch
[2026-03-16 17:18:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-16 17:18:55] 2.9.2.0 4638 10558 95624 157351 0 252 31217317 36864001 0 130560 0 4285450 99.984 380784 12054 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-16 17:18:55] CVMFS is ok
[2026-03-16 17:18:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-16 17:18:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-16 17:18:55] Further information can be found at the LHC@home message board.
[2026-03-16 17:18:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 17:18:55] Checking for apptainer binary...
[2026-03-16 17:18:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-16 17:18:55] Running /usr/bin/apptainer --version
[2026-03-16 17:18:55] apptainer version 1.4.1-1.1
[2026-03-16 17:18:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 17:18:55] thA337a
[2026-03-16 17:18:55] apptainer works
[2026-03-16 17:18:55] Set ATHENA_PROC_NUMBER=3
[2026-03-16 17:18:55] Set ATHENA_CORE_NUMBER=3
[2026-03-16 17:18:55] Starting ATLAS job with PandaID=7056897438
[2026-03-16 17:18:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-16 20:27:28]  *** The last 200 lines of the pilot log: ***
[2026-03-16 20:27:28] 2026-03-16 19:26:28,450 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-16 20:27:28] 2026-03-16 19:26:28,450 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-16 20:27:28] 2026-03-16 19:26:28,450 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-16 20:27:28] 2026-03-16 19:26:28,450 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-16 20:27:28] 2026-03-16 19:26:28,450 | INFO     | job 7056897438 has completed (purged errors)
[2026-03-16 20:27:28] 2026-03-16 19:26:28,450 | INFO     | overall cleanup function is called
[2026-03-16 20:27:28] 2026-03-16 19:26:29,455 | INFO     | --- collectZombieJob: --- 10, [1651280]
[2026-03-16 20:27:28] 2026-03-16 19:26:29,455 | INFO     | zombie collector waiting for pid 1651280
[2026-03-16 20:27:28] 2026-03-16 19:26:29,455 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-16 20:27:28] 2026-03-16 19:26:29,455 | INFO     | collected zombie processes
[2026-03-16 20:27:28] 2026-03-16 19:26:29,455 | INFO     | will attempt to kill all subprocesses of pid=1651280
[2026-03-16 20:27:28] 2026-03-16 19:26:29,500 | INFO     | process IDs to be killed: [1651280] (in reverse order)
[2026-03-16 20:27:28] 2026-03-16 19:26:29,528 | WARNING  | found no corresponding commands to process id(s)
[2026-03-16 20:27:28] 2026-03-16 19:26:29,528 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-16 20:27:28] 2026-03-16 19:26:29,529 | INFO     | did not find any defunct processes belonging to 1651280
[2026-03-16 20:27:28] 2026-03-16 19:26:29,530 | INFO     | did not find any defunct processes belonging to 1651280
[2026-03-16 20:27:28] 2026-03-16 19:26:29,530 | INFO     | ready for new job
[2026-03-16 20:27:28] 2026-03-16 19:26:29,530 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-16 20:27:28] 2026-03-16 19:26:29,531 | INFO     | **************************************
[2026-03-16 20:27:28] 2026-03-16 19:26:29,531 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-16 20:27:28] 2026-03-16 19:26:29,531 | INFO     | **************************************
[2026-03-16 20:27:28] 2026-03-16 19:26:29,531 | INFO     | 
[2026-03-16 20:27:28] 2026-03-16 19:26:29,532 | INFO     | architecture information:
[2026-03-16 20:27:28] 2026-03-16 19:26:29,532 | INFO     | executing command: cat /etc/os-release
[2026-03-16 20:27:28] 2026-03-16 19:26:29,542 | INFO     | cat /etc/os-release:
[2026-03-16 20:27:28] NAME="CentOS Linux"
[2026-03-16 20:27:28] VERSION="7 (Core)"
[2026-03-16 20:27:28] ID="centos"
[2026-03-16 20:27:28] ID_LIKE="rhel fedora"
[2026-03-16 20:27:28] VERSION_ID="7"
[2026-03-16 20:27:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-16 20:27:28] ANSI_COLOR="0;31"
[2026-03-16 20:27:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-16 20:27:28] HOME_URL="https://www.centos.org/"
[2026-03-16 20:27:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-16 20:27:28] 
[2026-03-16 20:27:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-16 20:27:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-16 20:27:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-16 20:27:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-16 20:27:28] 
[2026-03-16 20:27:28] 2026-03-16 19:26:29,542 | INFO     | **************************************
[2026-03-16 20:27:28] 2026-03-16 19:26:30,044 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-16 20:27:28] 2026-03-16 19:26:30,057 | INFO     | sufficient remaining disk space (374597484544 B)
[2026-03-16 20:27:28] 2026-03-16 19:26:30,057 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-16 20:27:28] 2026-03-16 19:26:30,057 | INFO     | current server update state: UPDATING_FINAL
[2026-03-16 20:27:28] 2026-03-16 19:26:30,057 | INFO     | update_server=False
[2026-03-16 20:27:28] 2026-03-16 19:26:30,057 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-16 20:27:28] 2026-03-16 19:26:30,057 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-16 20:27:28] 2026-03-16 19:26:30,057 | INFO     | found 0 job(s) in 20 queues
[2026-03-16 20:27:28] 2026-03-16 19:26:30,057 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-16 20:27:28] 2026-03-16 19:26:30,057 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-16 20:27:28] 2026-03-16 19:26:30,057 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-16 20:27:28] 2026-03-16 19:26:30,222 | WARNING  | process 1651280 can no longer be monitored (due to stat problems) - aborting
[2026-03-16 20:27:28] 2026-03-16 19:26:30,255 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-16 20:27:28] 2026-03-16 19:26:30,296 | INFO     | number of running child processes to parent process 1651280: 1
[2026-03-16 20:27:28] 2026-03-16 19:26:30,296 | INFO     | maximum number of monitored processes: 6
[2026-03-16 20:27:28] 2026-03-16 19:26:30,296 | INFO     | aborting job monitoring since job object (job id=7056897438) has expired
[2026-03-16 20:27:28] 2026-03-16 19:26:30,296 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-16 20:27:28] 2026-03-16 19:26:30,296 | INFO     | will abort loop
[2026-03-16 20:27:28] 2026-03-16 19:26:30,742 | INFO     | all payload control threads have been joined
[2026-03-16 20:27:28] 2026-03-16 19:26:30,882 | INFO     | all data control threads have been joined
[2026-03-16 20:27:28] 2026-03-16 19:26:30,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-16 20:27:28] 2026-03-16 19:26:31,062 | INFO     | [job] retrieve thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:31,063 | INFO     | [job] queue monitor thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:31,227 | INFO     | all job control threads have been joined
[2026-03-16 20:27:28] 2026-03-16 19:26:31,230 | INFO     | [payload] validate_post thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:31,301 | INFO     | [job] job monitor thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:31,400 | INFO     | [payload] failed_post thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:31,575 | INFO     | [job] validate thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:31,681 | INFO     | [job] create_data_payload thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:31,683 | INFO     | [payload] validate_pre thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:31,748 | INFO     | [payload] control thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:31,799 | INFO     | [data] copytool_in thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:31,813 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-16 20:27:28] 2026-03-16 19:26:31,886 | INFO     | [data] control thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:32,230 | INFO     | [job] control thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:32,306 | INFO     | [payload] execute_payloads thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:32,909 | INFO     | [data] copytool_out thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:35,820 | INFO     | [data] queue_monitor thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:26:40,790 | INFO     | job.realtimelogging is not enabled
[2026-03-16 20:27:28] 2026-03-16 19:26:41,795 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-16 20:27:28] 2026-03-16 19:27:21,891 | INFO     | [monitor] cgroup control has ended
[2026-03-16 20:27:28] 2026-03-16 19:27:23,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139919296862016)>', '<ExcThread(monitor, started 139918810535680)>']
[2026-03-16 20:27:28] 2026-03-16 19:27:23,289 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-16 20:27:28] 2026-03-16 19:27:23,290 | INFO     | [monitor] control thread has ended
[2026-03-16 20:27:28] 2026-03-16 19:27:28,182 | INFO     | all workflow threads have been joined
[2026-03-16 20:27:28] 2026-03-16 19:27:28,182 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-16 20:27:28] 2026-03-16 19:27:28,182 | INFO     | traces error code: 0
[2026-03-16 20:27:28] 2026-03-16 19:27:28,182 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-16 20:27:28] 2026-03-16 19:27:28,231 [wrapper] ==== pilot stdout END ====
[2026-03-16 20:27:28] 2026-03-16 19:27:28,233 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-16 20:27:28] 2026-03-16 19:27:28,236 [wrapper] pilotpid: 1646844
[2026-03-16 20:27:28] 2026-03-16 19:27:28,238 [wrapper] Pilot exit status: 0
[2026-03-16 20:27:28] 2026-03-16 19:27:28,245 [wrapper] pandaids: 7056897438
[2026-03-16 20:27:28] 2026-03-16 19:27:28,263 [wrapper] cleanup supervisor_pilot 1660362 1646845
[2026-03-16 20:27:28] 2026-03-16 19:27:28,265 [wrapper] Test setup, not cleaning
[2026-03-16 20:27:28] 2026-03-16 19:27:28,267 [wrapper] apfmon messages muted
[2026-03-16 20:27:28] 2026-03-16 19:27:28,270 [wrapper] ==== wrapper stdout END ====
[2026-03-16 20:27:28] 2026-03-16 19:27:28,272 [wrapper] ==== wrapper stderr END ====
[2026-03-16 20:27:28]  *** Error codes and diagnostics ***
[2026-03-16 20:27:28]     "exeErrorCode": 0,
[2026-03-16 20:27:28]     "exeErrorDiag": "",
[2026-03-16 20:27:28]     "pilotErrorCode": 0,
[2026-03-16 20:27:28]     "pilotErrorDiag": "",
[2026-03-16 20:27:28]  *** Listing of results directory ***
[2026-03-16 20:27:28] total 482464
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc    585013 Mar 16 13:24 pilot3.tar.gz
[2026-03-16 20:27:28] -rwx------ 1 boinc boinc     36322 Mar 16 14:06 runpilot2-wrapper.sh
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc      5111 Mar 16 14:08 queuedata.json
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc       100 Mar 16 17:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-16 20:27:28] -rwxr-xr-x 1 boinc boinc      7986 Mar 16 17:18 run_atlas
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc       105 Mar 16 17:18 job.xml
[2026-03-16 20:27:28] -rw-r--r-- 2 boinc boinc 243013813 Mar 16 17:18 EVNT.49133987._000008.pool.root.1
[2026-03-16 20:27:28] drwxrwx--x 2 boinc boinc      4096 Mar 16 17:18 shared
[2026-03-16 20:27:28] -rw-r--r-- 2 boinc boinc    597543 Mar 16 17:18 input.tar.gz
[2026-03-16 20:27:28] -rw-r--r-- 2 boinc boinc     15845 Mar 16 17:18 start_atlas.sh
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc         0 Mar 16 17:18 boinc_setup_complete
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc      6446 Mar 16 17:18 init_data.xml
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc         0 Mar 16 17:18 boinc_lockfile
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc      2614 Mar 16 17:18 pandaJob.out
[2026-03-16 20:27:28] -rw------- 1 boinc boinc   1006429 Mar 16 17:19 agis_schedconf.cvmfs.json
[2026-03-16 20:27:28] -rw------- 1 boinc boinc       424 Mar 16 17:19 workernode_map.json
[2026-03-16 20:27:28] drwx------ 5 boinc boinc      4096 Mar 16 17:19 pilot3
[2026-03-16 20:27:28] -rw------- 1 boinc boinc        95 Mar 16 20:25 pilot_heartbeat.json
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc       530 Mar 16 20:26 boinc_task_state.xml
[2026-03-16 20:27:28] -rw------- 1 boinc boinc 243212845 Mar 16 20:26 HITS.49176441._000195.pool.root.1
[2026-03-16 20:27:28] -rw------- 1 boinc boinc      1017 Mar 16 20:26 memory_monitor_summary.json
[2026-03-16 20:27:28] -rw------- 1 boinc boinc   1511579 Mar 16 20:26 agis_ddmendpoints.agis.ALL.json
[2026-03-16 20:27:28] -rw------- 1 boinc boinc    355204 Mar 16 20:26 log.49176441._000195.job.log.tgz.1
[2026-03-16 20:27:28] -rw------- 1 boinc boinc      6293 Mar 16 20:26 heartbeat.json
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc        28 Mar 16 20:27 wrapper_checkpoint.txt
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc      8192 Mar 16 20:27 boinc_mmap_file
[2026-03-16 20:27:28] -rw------- 1 boinc boinc      5148 Mar 16 20:27 pilotlog.txt
[2026-03-16 20:27:28] -rw------- 1 boinc boinc   1596464 Mar 16 20:27 log.49176441._000195.job.log.1
[2026-03-16 20:27:28] -rw------- 1 boinc boinc       357 Mar 16 20:27 output.list
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc       620 Mar 16 20:27 runtime_log
[2026-03-16 20:27:28] -rw------- 1 boinc boinc   1966080 Mar 16 20:27 result.tar.gz
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc      8902 Mar 16 20:27 runtime_log.err
[2026-03-16 20:27:28] -rw------- 1 boinc boinc       661 Mar 16 20:27 GY7LDmKpMM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmfAtLDmPMa78n.diag
[2026-03-16 20:27:28] -rw-r--r-- 1 boinc boinc     11860 Mar 16 20:27 stderr.txt
[2026-03-16 20:27:28] HITS file was successfully produced:
[2026-03-16 20:27:28] -rw------- 1 boinc boinc 243212845 Mar 16 20:26 shared/HITS.pool.root.1
[2026-03-16 20:27:28]  *** Contents of shared directory: ***
[2026-03-16 20:27:28] total 477356
[2026-03-16 20:27:28] -rw-r--r-- 2 boinc boinc 243013813 Mar 16 17:18 ATLAS.root_0
[2026-03-16 20:27:28] -rw-r--r-- 2 boinc boinc    597543 Mar 16 17:18 input.tar.gz
[2026-03-16 20:27:28] -rw-r--r-- 2 boinc boinc     15845 Mar 16 17:18 start_atlas.sh
[2026-03-16 20:27:28] -rw------- 1 boinc boinc 243212845 Mar 16 20:26 HITS.pool.root.1
[2026-03-16 20:27:28] -rw------- 1 boinc boinc   1966080 Mar 16 20:27 result.tar.gz
20:27:29 (1642801): run_atlas exited; CPU time 32649.708132
20:27:29 (1642801): called boinc_finish(0)

</stderr_txt>
]]>

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