Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:14:42 (408377): wrapper (7.7.26015): starting
08:14:42 (408377): wrapper: running run_atlas (--nthreads 4)
[2026-03-18 08:14:42] Arguments: --nthreads 4
[2026-03-18 08:14:42] Threads: 4
[2026-03-18 08:14:42] Checking for CVMFS
[2026-03-18 08:14:42] No cvmfs_config command found, will try listing directly
[2026-03-18 08:14:42] CVMFS is ok
[2026-03-18 08:14:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 08:14:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 08:14:42] Further information can be found at the LHC@home message board.
[2026-03-18 08:14:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 08:14:42] Checking for apptainer binary...
[2026-03-18 08:14:42] which: no apptainer in ((null))
[2026-03-18 08:14:42] apptainer is not installed, using version from CVMFS
[2026-03-18 08:14:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 08:14:43] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot140/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-03-18 08:14:43] apptainer works
[2026-03-18 08:14:43] Set ATHENA_PROC_NUMBER=4
[2026-03-18 08:14:43] Set ATHENA_CORE_NUMBER=4
[2026-03-18 08:14:43] Starting ATLAS job with PandaID=7056887708
[2026-03-18 08:14:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot140/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 12:43:45]  *** The last 200 lines of the pilot log: ***
[2026-03-18 12:43:45] 2026-03-18 11:30:53,283 | INFO     | mean y: 2339813.5162601625
[2026-03-18 12:43:45] 2026-03-18 11:30:53,283 | INFO     | intersect: -2568918426.316887
[2026-03-18 12:43:45] 2026-03-18 11:30:53,283 | INFO     | chi2: 1.083314204050925
[2026-03-18 12:43:45] 2026-03-18 11:30:53,283 | INFO     | current chi2=1.083314204050925 (change=-0.015332407988796495 %)
[2026-03-18 12:43:45] 2026-03-18 11:30:53,284 | INFO     | right removable region: 245
[2026-03-18 12:43:45] 2026-03-18 11:30:53,284 | INFO     | sum of square deviations: 4616114457.5
[2026-03-18 12:43:45] 2026-03-18 11:30:53,285 | INFO     | sum of deviations: -13790881342.000002
[2026-03-18 12:43:45] 2026-03-18 11:30:53,285 | INFO     | mean x: 1773825914.5
[2026-03-18 12:43:45] 2026-03-18 11:30:53,285 | INFO     | mean y: 2350743.5934959347
[2026-03-18 12:43:45] 2026-03-18 11:30:53,285 | INFO     | intersect: 5301747657.049285
[2026-03-18 12:43:45] 2026-03-18 11:30:53,285 | INFO     | chi2: 0.02611125393982464
[2026-03-18 12:43:45] 2026-03-18 11:30:53,285 | INFO     | current chi2=0.02611125393982464 (change=97.58931828585328 %)
[2026-03-18 12:43:45] 2026-03-18 11:30:53,285 | INFO     | sum of square deviations: 4340323240.0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,286 | INFO     | sum of deviations: -8878798819.0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,286 | INFO     | mean x: 1773826067.0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,286 | INFO     | mean y: 2348026.3029045644
[2026-03-18 12:43:45] 2026-03-18 11:30:53,286 | INFO     | intersect: 3630982097.52729
[2026-03-18 12:43:45] 2026-03-18 11:30:53,286 | INFO     | chi2: 0.014597344140791842
[2026-03-18 12:43:45] 2026-03-18 11:30:53,286 | INFO     | current chi2=0.014597344140791842 (change=44.09558355783094 %)
[2026-03-18 12:43:45] 2026-03-18 11:30:53,291 | INFO     | sum of square deviations: 4075741535.0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,292 | INFO     | sum of deviations: -5624546815.500001
[2026-03-18 12:43:45] 2026-03-18 11:30:53,292 | INFO     | mean x: 1773826219.5
[2026-03-18 12:43:45] 2026-03-18 11:30:53,292 | INFO     | mean y: 2346157.6398305083
[2026-03-18 12:43:45] 2026-03-18 11:30:53,292 | INFO     | intersect: 2450236566.897377
[2026-03-18 12:43:45] 2026-03-18 11:30:53,292 | INFO     | chi2: 0.008390350339221643
[2026-03-18 12:43:45] 2026-03-18 11:30:53,292 | INFO     | current chi2=0.008390350339221643 (change=42.52139116337567 %)
[2026-03-18 12:43:45] 2026-03-18 11:30:53,292 | INFO     | sum of square deviations: 3822136780.0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,293 | INFO     | sum of deviations: -4016047057.0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,293 | INFO     | mean x: 1773826372.0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,293 | INFO     | mean y: 2345189.670995671
[2026-03-18 12:43:45] 2026-03-18 11:30:53,293 | INFO     | intersect: 1866163935.8173823
[2026-03-18 12:43:45] 2026-03-18 11:30:53,293 | INFO     | chi2: 0.007188095242536501
[2026-03-18 12:43:45] 2026-03-18 11:30:53,293 | INFO     | current chi2=0.007188095242536501 (change=14.32902141243215 %)
[2026-03-18 12:43:45] 2026-03-18 11:30:53,293 | INFO     | left removable region: 40
[2026-03-18 12:43:45] 2026-03-18 11:30:53,293 | INFO     | sum of square deviations: 2671343110.0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,294 | INFO     | sum of deviations: 1021403214.9999995
[2026-03-18 12:43:45] 2026-03-18 11:30:53,294 | INFO     | mean x: 1773826799.0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,294 | INFO     | mean y: 2341609.0585365854
[2026-03-18 12:43:45] 2026-03-18 11:30:53,294 | INFO     | intersect: -675891145.3073967
[2026-03-18 12:43:45] 2026-03-18 11:30:53,294 | INFO     | chi2: 0.0024846023434147197
[2026-03-18 12:43:45] 2026-03-18 11:30:53,294 | INFO     | current memory leak: 0.38 B/s (using 205 data points, chi2=0.00)
[2026-03-18 12:43:45] 2026-03-18 11:30:53,295 | INFO     | could have reported an average CPU frequency of 3555 MHz (12 samples)
[2026-03-18 12:43:45] 2026-03-18 11:30:53,295 | INFO     | ..............................
[2026-03-18 12:43:45] 2026-03-18 11:30:53,295 | INFO     | . Timing measurements:
[2026-03-18 12:43:45] 2026-03-18 11:30:53,295 | INFO     | . get job = 0 s
[2026-03-18 12:43:45] 2026-03-18 11:30:53,295 | INFO     | . initial setup = 9 s
[2026-03-18 12:43:45] 2026-03-18 11:30:53,295 | INFO     | . payload setup = 11 s
[2026-03-18 12:43:45] 2026-03-18 11:30:53,295 | INFO     | . stage-in = 0 s
[2026-03-18 12:43:45] 2026-03-18 11:30:53,295 | INFO     | . payload execution = 15314 s
[2026-03-18 12:43:45] 2026-03-18 11:30:53,295 | INFO     | . stage-out = 0 s
[2026-03-18 12:43:45] 2026-03-18 11:30:53,295 | INFO     | . log creation = 0 s
[2026-03-18 12:43:45] 2026-03-18 11:30:53,295 | INFO     | ..............................
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | 
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | job summary report
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | --------------------------------------------------
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | PanDA job id: 7056887708
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | task id: 49176124
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | errors: (none)
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | pilot state: finished 
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | transexitcode: 0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | exeerrorcode: 0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | exeerrordiag: 
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | exitcode: 0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | exitmsg: OK
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | cpuconsumptiontime: 57633 s
[2026-03-18 12:43:45] 2026-03-18 11:30:53,343 | INFO     | nevents: 400
[2026-03-18 12:43:45] 2026-03-18 11:30:53,344 | INFO     | neventsw: 0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,344 | INFO     | pid: 424722
[2026-03-18 12:43:45] 2026-03-18 11:30:53,344 | INFO     | pgrp: 424722
[2026-03-18 12:43:45] 2026-03-18 11:30:53,344 | INFO     | corecount: 4
[2026-03-18 12:43:45] 2026-03-18 11:30:53,344 | INFO     | event service: False
[2026-03-18 12:43:45] 2026-03-18 11:30:53,344 | INFO     | sizes: {0: 2279910, 1: 2280371, 11: 2280371, 15330: 2312263, 15332: 2321285, 15333: 2321341, 15335: 2321663}
[2026-03-18 12:43:45] 2026-03-18 11:30:53,344 | INFO     | --------------------------------------------------
[2026-03-18 12:43:45] 2026-03-18 11:30:53,344 | INFO     | 
[2026-03-18 12:43:45] 2026-03-18 11:30:53,344 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot140/slots/0
[2026-03-18 12:43:45] 2026-03-18 11:30:53,363 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,363 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,363 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,363 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,363 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,363 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,363 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,363 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,363 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,363 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,363 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,364 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,364 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,364 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,364 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,364 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,364 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,364 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 12:43:45] 2026-03-18 11:30:53,364 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,364 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 12:43:45] 2026-03-18 11:30:53,364 | INFO     | job 7056887708 has completed (purged errors)
[2026-03-18 12:43:45] 2026-03-18 11:30:53,364 | INFO     | overall cleanup function is called
[2026-03-18 12:43:45] 2026-03-18 11:30:54,371 | INFO     | --- collectZombieJob: --- 10, [424722]
[2026-03-18 12:43:45] 2026-03-18 11:30:54,372 | INFO     | zombie collector waiting for pid 424722
[2026-03-18 12:43:45] 2026-03-18 11:30:54,372 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 12:43:45] 2026-03-18 11:30:54,372 | INFO     | collected zombie processes
[2026-03-18 12:43:45] 2026-03-18 11:30:54,372 | INFO     | will attempt to kill all subprocesses of pid=424722
[2026-03-18 12:43:45] 2026-03-18 11:30:54,708 | WARNING  | process 424722 can no longer be monitored (due to stat problems) - aborting
[2026-03-18 12:43:45] 2026-03-18 11:30:55,507 | INFO     | using path: /var/lib/boinc/var/slot140/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 12:43:45] 2026-03-18 11:30:55,507 | INFO     | using path: /var/lib/boinc/var/slot140/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 12:43:45] 2026-03-18 11:30:55,507 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-18 12:43:45] 2026-03-18 11:30:55,508 | WARNING  | maxPSS not found in memory monitor output
[2026-03-18 12:43:45] 2026-03-18 11:30:55,508 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot140/slots/0/PanDA_Pilot-7056887708/payload.stdout) since it has not been created yet
[2026-03-18 12:43:45] 2026-03-18 11:30:55,508 | INFO     | executing command: df -mP /var/lib/boinc/var/slot140/slots/0
[2026-03-18 12:43:45] 2026-03-18 11:30:55,524 | INFO     | sufficient remaining disk space (19759366144 B)
[2026-03-18 12:43:45] 2026-03-18 11:30:55,524 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-18 12:43:45] 2026-03-18 11:30:55,524 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot140/slots/0/PanDA_Pilot-7056887708/HITS.49176124._000036.pool.root.1 since it does not exist
[2026-03-18 12:43:45] 2026-03-18 11:30:55,662 | INFO     | process IDs to be killed: [424722] (in reverse order)
[2026-03-18 12:43:45] 2026-03-18 11:30:56,098 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 12:43:45] 2026-03-18 11:30:56,098 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 12:43:45] 2026-03-18 11:30:56,153 | INFO     | did not find any defunct processes belonging to 424722
[2026-03-18 12:43:45] 2026-03-18 11:30:56,167 | INFO     | number of running child processes to parent process 424722: 1
[2026-03-18 12:43:45] 2026-03-18 11:30:56,167 | INFO     | maximum number of monitored processes: 6
[2026-03-18 12:43:45] 2026-03-18 11:30:56,167 | INFO     | aborting job monitoring since job object (job id=7056887708) has expired
[2026-03-18 12:43:45] 2026-03-18 11:30:56,191 | INFO     | did not find any defunct processes belonging to 424722
[2026-03-18 12:43:45] 2026-03-18 11:30:56,191 | INFO     | ready for new job
[2026-03-18 12:43:45] 2026-03-18 11:30:56,192 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 12:43:45] 2026-03-18 11:30:56,193 | INFO     | **************************************
[2026-03-18 12:43:45] 2026-03-18 11:30:56,194 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 12:43:45] 2026-03-18 11:30:56,194 | INFO     | **************************************
[2026-03-18 12:43:45] 2026-03-18 11:30:56,194 | INFO     | 
[2026-03-18 12:43:45] 2026-03-18 11:30:56,199 | INFO     | architecture information:
[2026-03-18 12:43:45] 2026-03-18 11:30:56,200 | INFO     | executing command: cat /etc/os-release
[2026-03-18 12:43:45] 2026-03-18 11:30:56,219 | INFO     | cat /etc/os-release:
[2026-03-18 12:43:45] NAME="CentOS Linux"
[2026-03-18 12:43:45] VERSION="7 (Core)"
[2026-03-18 12:43:45] ID="centos"
[2026-03-18 12:43:45] ID_LIKE="rhel fedora"
[2026-03-18 12:43:45] VERSION_ID="7"
[2026-03-18 12:43:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 12:43:45] ANSI_COLOR="0;31"
[2026-03-18 12:43:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 12:43:45] HOME_URL="https://www.centos.org/"
[2026-03-18 12:43:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 12:43:45] 
[2026-03-18 12:43:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 12:43:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 12:43:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 12:43:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 12:43:45] 
[2026-03-18 12:43:45] 2026-03-18 11:30:56,220 | INFO     | **************************************
[2026-03-18 12:43:45] 2026-03-18 11:30:56,722 | INFO     | executing command: df -mP /var/lib/boinc/var/slot140/slots/0
[2026-03-18 12:43:45] 2026-03-18 11:30:56,741 | INFO     | sufficient remaining disk space (19760414720 B)
[2026-03-18 12:43:45] 2026-03-18 11:30:56,741 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 12:43:45] 2026-03-18 11:30:56,741 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 12:43:45] 2026-03-18 11:30:56,741 | INFO     | update_server=False
[2026-03-18 12:43:45] 2026-03-18 11:30:56,741 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 12:43:45] 2026-03-18 11:30:56,742 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 12:43:45] 2026-03-18 11:30:56,742 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 12:43:45] 2026-03-18 11:30:56,742 | INFO     | will abort loop
[2026-03-18 12:43:45] 2026-03-18 11:30:56,873 | INFO     | all job control threads have been joined
[2026-03-18 12:43:45] 2026-03-18 11:30:57,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 12:43:45] 2026-03-18 11:30:57,746 | INFO     | [job] retrieve thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:57,747 | INFO     | [job] job monitor thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:57,770 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:57,782 | INFO     | all data control threads have been joined
[2026-03-18 12:43:45] 2026-03-18 11:30:57,878 | INFO     | [job] control thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:58,030 | INFO     | [payload] failed_post thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:58,227 | INFO     | all payload control threads have been joined
[2026-03-18 12:43:45] 2026-03-18 11:30:58,275 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:58,364 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 12:43:45] 2026-03-18 11:30:58,405 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:58,442 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:58,747 | INFO     | [data] copytool_out thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:58,787 | INFO     | [data] control thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:58,943 | INFO     | [data] copytool_in thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:59,027 | INFO     | [job] validate thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:59,232 | INFO     | [payload] control thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:59,276 | INFO     | [payload] validate_post thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:30:59,369 | INFO     | [job] queue monitor thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:31:01,458 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 12:43:45] 2026-03-18 11:31:26,008 | INFO     | PID=413380 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-18 12:43:45] 2026-03-18 11:31:26,009 | INFO     | .. there are 44 such processes running
[2026-03-18 12:43:45] 2026-03-18 11:31:26,009 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 12:43:45] 2026-03-18 11:31:26,009 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 12:43:45] 2026-03-18 11:31:26,009 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 12:43:45] 2026-03-18 11:31:32,954 | INFO     | [monitor] cgroup control has ended
[2026-03-18 12:43:45] 2026-03-18 11:31:33,303 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22672363714368)>', '<ExcThread(monitor, started 22672041801472)>']
[2026-03-18 12:43:45] 2026-03-18 11:31:34,049 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 12:43:45] 2026-03-18 11:31:34,049 | INFO     | [monitor] control thread has ended
[2026-03-18 12:43:45] 2026-03-18 11:31:38,328 | INFO     | all workflow threads have been joined
[2026-03-18 12:43:45] 2026-03-18 11:31:38,328 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 12:43:45] 2026-03-18 11:31:38,328 | INFO     | traces error code: 0
[2026-03-18 12:43:45] 2026-03-18 11:31:38,328 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 12:43:45] 2026-03-18 11:31:38,543 [wrapper] ==== pilot stdout END ====
[2026-03-18 12:43:45] 2026-03-18 11:31:38,555 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 12:43:45] 2026-03-18 11:31:38,565 [wrapper] pilotpid: 413380
[2026-03-18 12:43:45] 2026-03-18 11:31:38,568 [wrapper] Pilot exit status: 0
[2026-03-18 12:43:45] 2026-03-18 11:31:38,598 [wrapper] pandaids: 7056887708
[2026-03-18 12:43:45] 2026-03-18 11:31:38,760 [wrapper] cleanup supervisor_pilot 1631760 413381
[2026-03-18 12:43:45] 2026-03-18 11:31:38,766 [wrapper] Test setup, not cleaning
[2026-03-18 12:43:45] 2026-03-18 11:31:38,770 [wrapper] apfmon messages muted
[2026-03-18 12:43:45] 2026-03-18 11:31:38,776 [wrapper] ==== wrapper stdout END ====
[2026-03-18 12:43:45] 2026-03-18 11:31:38,780 [wrapper] ==== wrapper stderr END ====
[2026-03-18 12:43:45]  *** Error codes and diagnostics ***
[2026-03-18 12:43:45]     "exeErrorCode": 0,
[2026-03-18 12:43:45]     "exeErrorDiag": "",
[2026-03-18 12:43:45]     "pilotErrorCode": 0,
[2026-03-18 12:43:45]     "pilotErrorDiag": "",
[2026-03-18 12:43:45]  *** Listing of results directory ***
[2026-03-18 12:43:45] total 478364
[2026-03-18 12:43:45] -rw-r--r--. 1 boinc boinc    585013 Mar 16 13:24 pilot3.tar.gz
[2026-03-18 12:43:45] -rwx------. 1 boinc boinc     36322 Mar 16 13:55 runpilot2-wrapper.sh
[2026-03-18 12:43:45] -rw-r--r--. 1 boinc boinc      5111 Mar 16 13:58 queuedata.json
[2026-03-18 12:43:45] -rw-r--r--. 1 boinc boinc       100 Mar 18 08:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 12:43:45] -rwxr-xr-x. 1 boinc boinc      7986 Mar 18 08:14 run_atlas
[2026-03-18 12:43:45] -rw-r--r--. 1 boinc boinc       105 Mar 18 08:14 job.xml
[2026-03-18 12:43:45] -rw-r--r--. 2 boinc boinc    597557 Mar 18 08:14 input.tar.gz
[2026-03-18 12:43:45] -rw-r--r--. 1 boinc boinc      6709 Mar 18 08:14 init_data.xml
[2026-03-18 12:43:45] -rw-r--r--. 2 boinc boinc 240215856 Mar 18 08:14 EVNT.49132651._000002.pool.root.1
[2026-03-18 12:43:45] -rw-r--r--. 2 boinc boinc     15845 Mar 18 08:14 start_atlas.sh
[2026-03-18 12:43:45] drwxrwx--x. 2 boinc boinc      4096 Mar 18 08:14 shared
[2026-03-18 12:43:45] -rw-r--r--. 1 boinc boinc         0 Mar 18 08:14 boinc_lockfile
[2026-03-18 12:43:45] -rw-r--r--. 1 boinc boinc      2638 Mar 18 08:14 pandaJob.out
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc   1011499 Mar 18 08:14 agis_schedconf.cvmfs.json
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc       443 Mar 18 08:15 workernode_map.json
[2026-03-18 12:43:45] drwx------. 5 boinc boinc      4096 Mar 18 08:15 pilot3
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc 240618529 Mar 18 12:30 HITS.49176124._000036.pool.root.1
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc        95 Mar 18 12:30 pilot_heartbeat.json
[2026-03-18 12:43:45] -rw-r--r--. 1 boinc boinc       530 Mar 18 12:30 boinc_task_state.xml
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc      1042 Mar 18 12:30 memory_monitor_summary.json
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc   1511579 Mar 18 12:30 agis_ddmendpoints.agis.ALL.json
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc    415231 Mar 18 12:30 log.49176124._000036.job.log.tgz.1
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc      6344 Mar 18 12:30 heartbeat.json
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc      4831 Mar 18 12:31 pilotlog.txt
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc   2118894 Mar 18 12:31 log.49176124._000036.job.log.1
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc       357 Mar 18 12:31 output.list
[2026-03-18 12:43:45] -rw-r--r--. 1 boinc boinc       620 Mar 18 12:31 runtime_log
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc   2549760 Mar 18 12:31 result.tar.gz
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc       666 Mar 18 12:31 vHuMDmceMM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmRAwLDmMoeerm.diag
[2026-03-18 12:43:45] -rw-r--r--. 1 boinc boinc      9222 Mar 18 12:31 runtime_log.err
[2026-03-18 12:43:45] -rw-r--r--. 1 boinc boinc        27 Mar 18 12:43 wrapper_checkpoint.txt
[2026-03-18 12:43:45] -rw-r--r--. 1 boinc boinc      8192 Mar 18 12:43 boinc_mmap_file
[2026-03-18 12:43:45] -rw-r--r--. 1 boinc boinc     21318 Mar 18 12:43 stderr.txt
[2026-03-18 12:43:45] HITS file was successfully produced:
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc 240618529 Mar 18 12:30 shared/HITS.pool.root.1
[2026-03-18 12:43:45]  *** Contents of shared directory: ***
[2026-03-18 12:43:45] total 472668
[2026-03-18 12:43:45] -rw-r--r--. 2 boinc boinc    597557 Mar 18 08:14 input.tar.gz
[2026-03-18 12:43:45] -rw-r--r--. 2 boinc boinc 240215856 Mar 18 08:14 ATLAS.root_0
[2026-03-18 12:43:45] -rw-r--r--. 2 boinc boinc     15845 Mar 18 08:14 start_atlas.sh
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc 240618529 Mar 18 12:30 HITS.pool.root.1
[2026-03-18 12:43:45] -rw-------. 1 boinc boinc   2549760 Mar 18 12:31 result.tar.gz
12:43:46 (408377): run_atlas exited; CPU time 58380.344856
12:43:46 (408377): called boinc_finish(0)

</stderr_txt>
]]>

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