Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:00:10 (2768456): wrapper (7.7.26015): starting
05:00:10 (2768456): wrapper: running run_atlas (--nthreads 4)
[2026-03-18 05:00:10] Arguments: --nthreads 4
[2026-03-18 05:00:10] Threads: 4
[2026-03-18 05:00:10] Checking for CVMFS
[2026-03-18 05:00:10] No cvmfs_config command found, will try listing directly
[2026-03-18 05:00:10] CVMFS is ok
[2026-03-18 05:00:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 05:00:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 05:00:10] Further information can be found at the LHC@home message board.
[2026-03-18 05:00:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 05:00:10] Checking for apptainer binary...
[2026-03-18 05:00:10] which: no apptainer in ((null))
[2026-03-18 05:00:10] apptainer is not installed, using version from CVMFS
[2026-03-18 05:00:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 05:00:10] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2026-03-18 05:00:10] apptainer works
[2026-03-18 05:00:10] Set ATHENA_PROC_NUMBER=4
[2026-03-18 05:00:10] Set ATHENA_CORE_NUMBER=4
[2026-03-18 05:00:10] Starting ATLAS job with PandaID=7056888677
[2026-03-18 05:00:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 12:25:10]  *** The last 200 lines of the pilot log: ***
[2026-03-18 12:25:10] 2026-03-18 11:19:26,201 | INFO     | extracted standard info from prmon json
[2026-03-18 12:25:10] 2026-03-18 11:19:26,201 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 12:25:10] 2026-03-18 11:19:26,202 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 12:25:10] 2026-03-18 11:19:26,203 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 12:25:10] 2026-03-18 11:19:26,203 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 12:25:10] 2026-03-18 11:19:26,210 | INFO     | fitting pss+swap vs Time
[2026-03-18 12:25:10] 2026-03-18 11:19:26,211 | INFO     | sum of square deviations: 24999270588.0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,215 | INFO     | sum of deviations: 9163484538.000011
[2026-03-18 12:25:10] 2026-03-18 11:19:26,215 | INFO     | mean x: 1773819600.5
[2026-03-18 12:25:10] 2026-03-18 11:19:26,216 | INFO     | mean y: 2331276.412037037
[2026-03-18 12:25:10] 2026-03-18 11:19:26,216 | INFO     | intersect: -647862433.2470533
[2026-03-18 12:25:10] 2026-03-18 11:19:26,216 | INFO     | chi2: 1.9971871208803411
[2026-03-18 12:25:10] 2026-03-18 11:19:26,217 | INFO     | sum of square deviations: 24141245198.0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,221 | INFO     | sum of deviations: 33883847510.0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,221 | INFO     | mean x: 1773819448.0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,221 | INFO     | mean y: 2335628.512880562
[2026-03-18 12:25:10] 2026-03-18 11:19:26,222 | INFO     | intersect: -2487338255.0564613
[2026-03-18 12:25:10] 2026-03-18 11:19:26,222 | INFO     | chi2: 1.3283236515400656
[2026-03-18 12:25:10] 2026-03-18 11:19:26,222 | INFO     | current chi2=1.3283236515400656 (change=33.490275515368175 %)
[2026-03-18 12:25:10] 2026-03-18 11:19:26,223 | INFO     | sum of square deviations: 23303080645.5
[2026-03-18 12:25:10] 2026-03-18 11:19:26,227 | INFO     | sum of deviations: 33307090405.499992
[2026-03-18 12:25:10] 2026-03-18 11:19:26,227 | INFO     | mean x: 1773819295.5
[2026-03-18 12:25:10] 2026-03-18 11:19:26,227 | INFO     | mean y: 2335523.5710900472
[2026-03-18 12:25:10] 2026-03-18 11:19:26,228 | INFO     | intersect: -2532984185.3124537
[2026-03-18 12:25:10] 2026-03-18 11:19:26,228 | INFO     | chi2: 1.3284919956826724
[2026-03-18 12:25:10] 2026-03-18 11:19:26,228 | INFO     | current chi2=1.3284919956826724 (change=-0.012673428076931633 %)
[2026-03-18 12:25:10] 2026-03-18 11:19:26,228 | INFO     | right removable region: 421
[2026-03-18 12:25:10] 2026-03-18 11:19:26,229 | INFO     | sum of square deviations: 24141245198.0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,233 | INFO     | sum of deviations: -33219800716.999996
[2026-03-18 12:25:10] 2026-03-18 11:19:26,233 | INFO     | mean x: 1773819753.0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,233 | INFO     | mean y: 2338744.3395784544
[2026-03-18 12:25:10] 2026-03-18 11:19:26,234 | INFO     | intersect: 2443221069.1427712
[2026-03-18 12:25:10] 2026-03-18 11:19:26,234 | INFO     | chi2: 0.8209807199716825
[2026-03-18 12:25:10] 2026-03-18 11:19:26,234 | INFO     | current chi2=0.8209807199716825 (change=58.893149700975336 %)
[2026-03-18 12:25:10] 2026-03-18 11:19:26,235 | INFO     | sum of square deviations: 23303080645.5
[2026-03-18 12:25:10] 2026-03-18 11:19:26,239 | INFO     | sum of deviations: -12547563177.0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,239 | INFO     | mean x: 1773819905.5
[2026-03-18 12:25:10] 2026-03-18 11:19:26,239 | INFO     | mean y: 2334979.8293838864
[2026-03-18 12:25:10] 2026-03-18 11:19:26,240 | INFO     | intersect: 957449784.9261699
[2026-03-18 12:25:10] 2026-03-18 11:19:26,240 | INFO     | chi2: 0.7299725912434357
[2026-03-18 12:25:10] 2026-03-18 11:19:26,240 | INFO     | current chi2=0.7299725912434357 (change=11.085294272365603 %)
[2026-03-18 12:25:10] 2026-03-18 11:19:26,240 | INFO     | left removable region: 20
[2026-03-18 12:25:10] 2026-03-18 11:19:26,241 | INFO     | sum of square deviations: 19994421400.0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,245 | INFO     | sum of deviations: 15954349432.0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,245 | INFO     | mean x: 1773819875.0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,245 | INFO     | mean y: 2338551.301745636
[2026-03-18 12:25:10] 2026-03-18 11:19:26,245 | INFO     | intersect: -1413063352.5101128
[2026-03-18 12:25:10] 2026-03-18 11:19:26,246 | INFO     | chi2: 0.0015338220578503656
[2026-03-18 12:25:10] 2026-03-18 11:19:26,246 | INFO     | current memory leak: 0.80 B/s (using 401 data points, chi2=0.00)
[2026-03-18 12:25:10] 2026-03-18 11:19:26,247 | INFO     | could have reported an average CPU frequency of 2614 MHz (18 samples)
[2026-03-18 12:25:10] 2026-03-18 11:19:26,247 | INFO     | ..............................
[2026-03-18 12:25:10] 2026-03-18 11:19:26,247 | INFO     | . Timing measurements:
[2026-03-18 12:25:10] 2026-03-18 11:19:26,247 | INFO     | . get job = 0 s
[2026-03-18 12:25:10] 2026-03-18 11:19:26,247 | INFO     | . initial setup = 6 s
[2026-03-18 12:25:10] 2026-03-18 11:19:26,247 | INFO     | . payload setup = 10 s
[2026-03-18 12:25:10] 2026-03-18 11:19:26,247 | INFO     | . stage-in = 0 s
[2026-03-18 12:25:10] 2026-03-18 11:19:26,247 | INFO     | . payload execution = 26311 s
[2026-03-18 12:25:10] 2026-03-18 11:19:26,247 | INFO     | . stage-out = 1 s
[2026-03-18 12:25:10] 2026-03-18 11:19:26,248 | INFO     | . log creation = 0 s
[2026-03-18 12:25:10] 2026-03-18 11:19:26,248 | INFO     | ..............................
[2026-03-18 12:25:10] 2026-03-18 11:19:26,339 | INFO     | 
[2026-03-18 12:25:10] 2026-03-18 11:19:26,340 | INFO     | job summary report
[2026-03-18 12:25:10] 2026-03-18 11:19:26,340 | INFO     | --------------------------------------------------
[2026-03-18 12:25:10] 2026-03-18 11:19:26,340 | INFO     | PanDA job id: 7056888677
[2026-03-18 12:25:10] 2026-03-18 11:19:26,340 | INFO     | task id: 49176167
[2026-03-18 12:25:10] 2026-03-18 11:19:26,340 | INFO     | errors: (none)
[2026-03-18 12:25:10] 2026-03-18 11:19:26,340 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 12:25:10] 2026-03-18 11:19:26,340 | INFO     | pilot state: finished 
[2026-03-18 12:25:10] 2026-03-18 11:19:26,340 | INFO     | transexitcode: 0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,340 | INFO     | exeerrorcode: 0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,340 | INFO     | exeerrordiag: 
[2026-03-18 12:25:10] 2026-03-18 11:19:26,341 | INFO     | exitcode: 0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,341 | INFO     | exitmsg: OK
[2026-03-18 12:25:10] 2026-03-18 11:19:26,341 | INFO     | cpuconsumptiontime: 100195 s
[2026-03-18 12:25:10] 2026-03-18 11:19:26,341 | INFO     | nevents: 400
[2026-03-18 12:25:10] 2026-03-18 11:19:26,341 | INFO     | neventsw: 0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,341 | INFO     | pid: 2777431
[2026-03-18 12:25:10] 2026-03-18 11:19:26,341 | INFO     | pgrp: 2777431
[2026-03-18 12:25:10] 2026-03-18 11:19:26,341 | INFO     | corecount: 4
[2026-03-18 12:25:10] 2026-03-18 11:19:26,341 | INFO     | event service: False
[2026-03-18 12:25:10] 2026-03-18 11:19:26,341 | INFO     | sizes: {0: 2280032, 1: 2280294, 11: 2280322, 26325: 2316640, 26327: 2325854}
[2026-03-18 12:25:10] 2026-03-18 11:19:26,341 | INFO     | --------------------------------------------------
[2026-03-18 12:25:10] 2026-03-18 11:19:26,341 | INFO     | 
[2026-03-18 12:25:10] 2026-03-18 11:19:26,342 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot40/slots/0
[2026-03-18 12:25:10] 2026-03-18 11:19:26,363 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,363 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,364 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,364 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,364 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,364 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,364 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,364 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,364 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,364 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,364 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,364 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,364 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,365 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,365 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,365 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,365 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,365 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 12:25:10] 2026-03-18 11:19:26,365 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,365 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 12:25:10] 2026-03-18 11:19:26,365 | INFO     | job 7056888677 has completed (purged errors)
[2026-03-18 12:25:10] 2026-03-18 11:19:26,365 | INFO     | overall cleanup function is called
[2026-03-18 12:25:10] 2026-03-18 11:19:27,374 | INFO     | --- collectZombieJob: --- 10, [2777431]
[2026-03-18 12:25:10] 2026-03-18 11:19:27,374 | INFO     | zombie collector waiting for pid 2777431
[2026-03-18 12:25:10] 2026-03-18 11:19:27,374 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 12:25:10] 2026-03-18 11:19:27,374 | INFO     | collected zombie processes
[2026-03-18 12:25:10] 2026-03-18 11:19:27,374 | INFO     | will attempt to kill all subprocesses of pid=2777431
[2026-03-18 12:25:10] 2026-03-18 11:19:27,770 | INFO     | process IDs to be killed: [2777431] (in reverse order)
[2026-03-18 12:25:10] 2026-03-18 11:19:27,932 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 12:25:10] 2026-03-18 11:19:27,933 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 12:25:10] 2026-03-18 11:19:27,945 | INFO     | did not find any defunct processes belonging to 2777431
[2026-03-18 12:25:10] 2026-03-18 11:19:27,958 | INFO     | did not find any defunct processes belonging to 2777431
[2026-03-18 12:25:10] 2026-03-18 11:19:27,958 | INFO     | ready for new job
[2026-03-18 12:25:10] 2026-03-18 11:19:27,958 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 12:25:10] 2026-03-18 11:19:27,961 | INFO     | **************************************
[2026-03-18 12:25:10] 2026-03-18 11:19:27,961 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 12:25:10] 2026-03-18 11:19:27,961 | INFO     | **************************************
[2026-03-18 12:25:10] 2026-03-18 11:19:27,962 | INFO     | 
[2026-03-18 12:25:10] 2026-03-18 11:19:27,965 | INFO     | architecture information:
[2026-03-18 12:25:10] 2026-03-18 11:19:27,966 | INFO     | executing command: cat /etc/os-release
[2026-03-18 12:25:10] 2026-03-18 11:19:27,981 | INFO     | cat /etc/os-release:
[2026-03-18 12:25:10] NAME="CentOS Linux"
[2026-03-18 12:25:10] VERSION="7 (Core)"
[2026-03-18 12:25:10] ID="centos"
[2026-03-18 12:25:10] ID_LIKE="rhel fedora"
[2026-03-18 12:25:10] VERSION_ID="7"
[2026-03-18 12:25:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 12:25:10] ANSI_COLOR="0;31"
[2026-03-18 12:25:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 12:25:10] HOME_URL="https://www.centos.org/"
[2026-03-18 12:25:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 12:25:10] 
[2026-03-18 12:25:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 12:25:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 12:25:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 12:25:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 12:25:10] 
[2026-03-18 12:25:10] 2026-03-18 11:19:27,982 | INFO     | **************************************
[2026-03-18 12:25:10] 2026-03-18 11:19:28,485 | INFO     | executing command: df -mP /var/lib/boinc/var/slot40/slots/0
[2026-03-18 12:25:10] 2026-03-18 11:19:28,501 | INFO     | sufficient remaining disk space (22306357248 B)
[2026-03-18 12:25:10] 2026-03-18 11:19:28,501 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 12:25:10] 2026-03-18 11:19:28,502 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 12:25:10] 2026-03-18 11:19:28,502 | INFO     | update_server=False
[2026-03-18 12:25:10] 2026-03-18 11:19:28,502 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 12:25:10] 2026-03-18 11:19:28,502 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 12:25:10] 2026-03-18 11:19:28,661 | INFO     | all data control threads have been joined
[2026-03-18 12:25:10] 2026-03-18 11:19:29,070 | INFO     | all payload control threads have been joined
[2026-03-18 12:25:10] 2026-03-18 11:19:29,096 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 12:25:10] 2026-03-18 11:19:29,283 | INFO     | all job control threads have been joined
[2026-03-18 12:25:10] 2026-03-18 11:19:29,507 | INFO     | [job] retrieve thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:29,666 | INFO     | [data] control thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:29,756 | INFO     | [job] validate thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:29,841 | INFO     | [payload] failed_post thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:29,850 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:29,857 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:30,075 | INFO     | [payload] control thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:30,233 | INFO     | [payload] validate_post thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:30,288 | INFO     | [job] control thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:30,467 | WARNING  | process 2777431 can no longer be monitored (due to stat problems) - aborting
[2026-03-18 12:25:10] 2026-03-18 11:19:30,610 | INFO     | [data] copytool_in thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:30,753 | INFO     | using path: /var/lib/boinc/var/slot40/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 12:25:10] 2026-03-18 11:19:30,767 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:30,959 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:31,102 | INFO     | [data] copytool_out thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:31,129 | INFO     | number of running child processes to parent process 2777431: 1
[2026-03-18 12:25:10] 2026-03-18 11:19:31,129 | INFO     | maximum number of monitored processes: 6
[2026-03-18 12:25:10] 2026-03-18 11:19:31,129 | INFO     | aborting job monitoring since job object (job id=7056888677) has expired
[2026-03-18 12:25:10] 2026-03-18 11:19:31,129 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 12:25:10] 2026-03-18 11:19:31,129 | INFO     | will abort loop
[2026-03-18 12:25:10] 2026-03-18 11:19:31,349 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 12:25:10] 2026-03-18 11:19:32,134 | INFO     | [job] job monitor thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:32,359 | INFO     | [job] queue monitor thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:32,511 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 12:25:10] 2026-03-18 11:19:57,985 | INFO     | PID=2772567 has CPU usage=9.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 12:25:10] 2026-03-18 11:19:57,985 | INFO     | .. there are 11 such processes running
[2026-03-18 12:25:10] 2026-03-18 11:19:57,985 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 12:25:10] 2026-03-18 11:19:57,985 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 12:25:10] 2026-03-18 11:19:57,985 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 12:25:10] 2026-03-18 11:20:11,648 | INFO     | [monitor] cgroup control has ended
[2026-03-18 12:25:10] 2026-03-18 11:20:13,489 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22895343167296)>', '<ExcThread(monitor, started 22895089927936)>']
[2026-03-18 12:25:10] 2026-03-18 11:20:14,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 12:25:10] 2026-03-18 11:20:14,066 | INFO     | [monitor] control thread has ended
[2026-03-18 12:25:10] 2026-03-18 11:20:18,515 | INFO     | all workflow threads have been joined
[2026-03-18 12:25:10] 2026-03-18 11:20:18,515 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 12:25:10] 2026-03-18 11:20:18,515 | INFO     | traces error code: 0
[2026-03-18 12:25:10] 2026-03-18 11:20:18,515 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 12:25:10] 2026-03-18 11:20:18,669 [wrapper] ==== pilot stdout END ====
[2026-03-18 12:25:10] 2026-03-18 11:20:18,671 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 12:25:10] 2026-03-18 11:20:18,674 [wrapper] pilotpid: 2772567
[2026-03-18 12:25:10] 2026-03-18 11:20:18,676 [wrapper] Pilot exit status: 0
[2026-03-18 12:25:10] 2026-03-18 11:20:18,702 [wrapper] pandaids: 7056888677
[2026-03-18 12:25:10] 2026-03-18 11:20:18,867 [wrapper] cleanup supervisor_pilot 3242274 2772568
[2026-03-18 12:25:10] 2026-03-18 11:20:18,875 [wrapper] Test setup, not cleaning
[2026-03-18 12:25:10] 2026-03-18 11:20:18,878 [wrapper] apfmon messages muted
[2026-03-18 12:25:10] 2026-03-18 11:20:18,880 [wrapper] ==== wrapper stdout END ====
[2026-03-18 12:25:10] 2026-03-18 11:20:18,908 [wrapper] ==== wrapper stderr END ====
[2026-03-18 12:25:10]  *** Error codes and diagnostics ***
[2026-03-18 12:25:10]     "exeErrorCode": 0,
[2026-03-18 12:25:10]     "exeErrorDiag": "",
[2026-03-18 12:25:10]     "pilotErrorCode": 0,
[2026-03-18 12:25:10]     "pilotErrorDiag": "",
[2026-03-18 12:25:10]  *** Listing of results directory ***
[2026-03-18 12:25:10] total 424652
[2026-03-18 12:25:10] -rw-r--r--. 1 boinc boinc    585013 Mar 16 13:24 pilot3.tar.gz
[2026-03-18 12:25:10] -rwx------. 1 boinc boinc     36322 Mar 16 13:55 runpilot2-wrapper.sh
[2026-03-18 12:25:10] -rw-r--r--. 1 boinc boinc      5111 Mar 16 13:58 queuedata.json
[2026-03-18 12:25:10] -rw-r--r--. 1 boinc boinc       100 Mar 18 05:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 12:25:10] -rwxr-xr-x. 1 boinc boinc      7986 Mar 18 05:00 run_atlas
[2026-03-18 12:25:10] -rw-r--r--. 1 boinc boinc       105 Mar 18 05:00 job.xml
[2026-03-18 12:25:10] -rw-r--r--. 1 boinc boinc      6563 Mar 18 05:00 init_data.xml
[2026-03-18 12:25:10] -rw-r--r--. 2 boinc boinc 217507530 Mar 18 05:00 EVNT.49132828._000005.pool.root.1
[2026-03-18 12:25:10] -rw-r--r--. 2 boinc boinc    597539 Mar 18 05:00 input.tar.gz
[2026-03-18 12:25:10] -rw-r--r--. 2 boinc boinc     15845 Mar 18 05:00 start_atlas.sh
[2026-03-18 12:25:10] drwxrwx--x. 2 boinc boinc      4096 Mar 18 05:00 shared
[2026-03-18 12:25:10] -rw-r--r--. 1 boinc boinc         0 Mar 18 05:00 boinc_lockfile
[2026-03-18 12:25:10] -rw-r--r--. 1 boinc boinc      2600 Mar 18 05:00 pandaJob.out
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc   1011515 Mar 18 05:00 agis_schedconf.cvmfs.json
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc       452 Mar 18 05:00 workernode_map.json
[2026-03-18 12:25:10] drwx------. 5 boinc boinc      4096 Mar 18 05:00 pilot3
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc 204862615 Mar 18 12:18 HITS.49176167._000119.pool.root.1
[2026-03-18 12:25:10] -rw-r--r--. 1 boinc boinc       530 Mar 18 12:19 boinc_task_state.xml
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc      1033 Mar 18 12:19 memory_monitor_summary.json
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc        95 Mar 18 12:19 pilot_heartbeat.json
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc   1511579 Mar 18 12:19 agis_ddmendpoints.agis.ALL.json
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc    583558 Mar 18 12:19 log.49176167._000119.job.log.tgz.1
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc      6400 Mar 18 12:19 heartbeat.json
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc      5361 Mar 18 12:20 pilotlog.txt
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc   3682568 Mar 18 12:20 log.49176167._000119.job.log.1
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc       357 Mar 18 12:20 output.list
[2026-03-18 12:25:10] -rw-r--r--. 1 boinc boinc       620 Mar 18 12:20 runtime_log
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc   4280320 Mar 18 12:20 result.tar.gz
[2026-03-18 12:25:10] -rw-r--r--. 1 boinc boinc      9205 Mar 18 12:20 runtime_log.err
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc       668 Mar 18 12:20 ZJnKDmoeMM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmo1sLDm6euOBo.diag
[2026-03-18 12:25:10] -rw-r--r--. 1 boinc boinc        28 Mar 18 12:24 wrapper_checkpoint.txt
[2026-03-18 12:25:10] -rw-r--r--. 1 boinc boinc      8192 Mar 18 12:25 boinc_mmap_file
[2026-03-18 12:25:10] -rw-r--r--. 1 boinc boinc     20851 Mar 18 12:25 stderr.txt
[2026-03-18 12:25:10] HITS file was successfully produced:
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc 204862615 Mar 18 12:18 shared/HITS.pool.root.1
[2026-03-18 12:25:10]  *** Contents of shared directory: ***
[2026-03-18 12:25:10] total 417264
[2026-03-18 12:25:10] -rw-r--r--. 2 boinc boinc 217507530 Mar 18 05:00 ATLAS.root_0
[2026-03-18 12:25:10] -rw-r--r--. 2 boinc boinc    597539 Mar 18 05:00 input.tar.gz
[2026-03-18 12:25:10] -rw-r--r--. 2 boinc boinc     15845 Mar 18 05:00 start_atlas.sh
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc 204862615 Mar 18 12:18 HITS.pool.root.1
[2026-03-18 12:25:10] -rw-------. 1 boinc boinc   4280320 Mar 18 12:20 result.tar.gz
12:25:12 (2768456): run_atlas exited; CPU time 101343.122944
12:25:12 (2768456): called boinc_finish(0)

</stderr_txt>
]]>

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