Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:53:55 (28919): wrapper (7.7.26015): starting
23:53:55 (28919): wrapper: running run_atlas (--nthreads 8)
[2026-03-16 23:53:55] Arguments: --nthreads 8
[2026-03-16 23:53:55] Threads: 8
[2026-03-16 23:53:55] Checking for CVMFS
[2026-03-16 23:53:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-16 23:53:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-16 23:53:55] Running cvmfs_config stat atlas.cern.ch
[2026-03-16 23:53:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-16 23:53:55] 2.11.2.0 2826 19448 74968 157357 3 73 17169488 20275200 1 130560 0 6808284 99.910 973042 15681 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-16 23:53:55] CVMFS is ok
[2026-03-16 23:53:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-16 23:53:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-16 23:53:55] Further information can be found at the LHC@home message board.
[2026-03-16 23:53:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 23:53:55] Checking for apptainer binary...
[2026-03-16 23:53:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-16 23:53:55] Running /usr/bin/apptainer --version
[2026-03-16 23:53:55] apptainer version 1.3.2-1.el7
[2026-03-16 23:53:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 23:53:57] c-204-35.aglt2.org
[2026-03-16 23:53:57] apptainer works
[2026-03-16 23:53:57] Set ATHENA_PROC_NUMBER=8
[2026-03-16 23:53:57] Set ATHENA_CORE_NUMBER=8
[2026-03-16 23:53:57] Starting ATLAS job with PandaID=7056594673
[2026-03-16 23:53:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 02:16:01]  *** The last 200 lines of the pilot log: ***
[2026-03-17 02:16:01] 2026-03-17 06:15:28,563 | INFO     | sum of deviations: 1659358477.9999943
[2026-03-17 02:16:01] 2026-03-17 06:15:28,563 | INFO     | mean x: 1773723898.0
[2026-03-17 02:16:01] 2026-03-17 06:15:28,564 | INFO     | mean y: 2492909.762589928
[2026-03-17 02:16:01] 2026-03-17 06:15:28,564 | INFO     | intersect: -3531990029.8409786
[2026-03-17 02:16:01] 2026-03-17 06:15:28,564 | INFO     | chi2: 2.387559684771233
[2026-03-17 02:16:01] 2026-03-17 06:15:28,564 | INFO     | sum of square deviations: 746051197.5
[2026-03-17 02:16:01] 2026-03-17 06:15:28,565 | INFO     | sum of deviations: 10616176236.0
[2026-03-17 02:16:01] 2026-03-17 06:15:28,565 | INFO     | mean x: 1773723745.5
[2026-03-17 02:16:01] 2026-03-17 06:15:28,566 | INFO     | mean y: 2508197.686567164
[2026-03-17 02:16:01] 2026-03-17 06:15:28,566 | INFO     | intersect: -25237266149.309258
[2026-03-17 02:16:01] 2026-03-17 06:15:28,566 | INFO     | chi2: 1.6309243540851255
[2026-03-17 02:16:01] 2026-03-17 06:15:28,566 | INFO     | current chi2=1.6309243540851255 (change=31.690739943056357 %)
[2026-03-17 02:16:01] 2026-03-17 06:15:28,566 | INFO     | sum of square deviations: 665612480.0
[2026-03-17 02:16:01] 2026-03-17 06:15:28,567 | INFO     | sum of deviations: 10193762643.000002
[2026-03-17 02:16:01] 2026-03-17 06:15:28,567 | INFO     | mean x: 1773723593.0
[2026-03-17 02:16:01] 2026-03-17 06:15:28,567 | INFO     | mean y: 2507396.496124031
[2026-03-17 02:16:01] 2026-03-17 06:15:28,567 | INFO     | intersect: -27161822967.81907
[2026-03-17 02:16:01] 2026-03-17 06:15:28,568 | INFO     | chi2: 1.6332687430497268
[2026-03-17 02:16:01] 2026-03-17 06:15:28,568 | INFO     | current chi2=1.6332687430497268 (change=-0.14374602713664264 %)
[2026-03-17 02:16:01] 2026-03-17 06:15:28,568 | INFO     | right removable region: 128
[2026-03-17 02:16:01] 2026-03-17 06:15:28,568 | INFO     | sum of square deviations: 746051197.5
[2026-03-17 02:16:01] 2026-03-17 06:15:28,569 | INFO     | sum of deviations: -19177334055.5
[2026-03-17 02:16:01] 2026-03-17 06:15:28,569 | INFO     | mean x: 1773724050.5
[2026-03-17 02:16:01] 2026-03-17 06:15:28,569 | INFO     | mean y: 2528938.9029850746
[2026-03-17 02:16:01] 2026-03-17 06:15:28,569 | INFO     | intersect: 45596314932.00576
[2026-03-17 02:16:01] 2026-03-17 06:15:28,570 | INFO     | chi2: 0.9026195954484498
[2026-03-17 02:16:01] 2026-03-17 06:15:28,570 | INFO     | current chi2=0.9026195954484498 (change=62.19488873071103 %)
[2026-03-17 02:16:01] 2026-03-17 06:15:28,570 | INFO     | sum of square deviations: 665612480.0
[2026-03-17 02:16:01] 2026-03-17 06:15:28,571 | INFO     | sum of deviations: -17535168580.0
[2026-03-17 02:16:01] 2026-03-17 06:15:28,571 | INFO     | mean x: 1773724203.0
[2026-03-17 02:16:01] 2026-03-17 06:15:28,571 | INFO     | mean y: 2525714.7209302327
[2026-03-17 02:16:01] 2026-03-17 06:15:28,571 | INFO     | intersect: 46730244693.233986
[2026-03-17 02:16:01] 2026-03-17 06:15:28,571 | INFO     | chi2: 0.8872490535168759
[2026-03-17 02:16:01] 2026-03-17 06:15:28,571 | INFO     | current chi2=0.8872490535168759 (change=1.7028814806460495 %)
[2026-03-17 02:16:01] 2026-03-17 06:15:28,572 | INFO     | left removable region: 20
[2026-03-17 02:16:01] 2026-03-17 06:15:28,572 | INFO     | sum of square deviations: 390582207.0
[2026-03-17 02:16:01] 2026-03-17 06:15:28,572 | INFO     | sum of deviations: 153664123.99999988
[2026-03-17 02:16:01] 2026-03-17 06:15:28,573 | INFO     | mean x: 1773724172.5
[2026-03-17 02:16:01] 2026-03-17 06:15:28,573 | INFO     | mean y: 2522715.4814814813
[2026-03-17 02:16:01] 2026-03-17 06:15:28,573 | INFO     | intersect: -695301625.4640783
[2026-03-17 02:16:01] 2026-03-17 06:15:28,573 | INFO     | chi2: 0.024994922521810035
[2026-03-17 02:16:01] 2026-03-17 06:15:28,573 | INFO     | current memory leak: 0.39 B/s (using 108 data points, chi2=0.02)
[2026-03-17 02:16:01] 2026-03-17 06:15:28,574 | INFO     | could have reported an average CPU frequency of 1662 MHz (8 samples)
[2026-03-17 02:16:01] 2026-03-17 06:15:28,574 | INFO     | ..............................
[2026-03-17 02:16:01] 2026-03-17 06:15:28,574 | INFO     | . Timing measurements:
[2026-03-17 02:16:01] 2026-03-17 06:15:28,574 | INFO     | . get job = 0 s
[2026-03-17 02:16:01] 2026-03-17 06:15:28,574 | INFO     | . initial setup = 8 s
[2026-03-17 02:16:01] 2026-03-17 06:15:28,575 | INFO     | . payload setup = 8 s
[2026-03-17 02:16:01] 2026-03-17 06:15:28,575 | INFO     | . stage-in = 0 s
[2026-03-17 02:16:01] 2026-03-17 06:15:28,575 | INFO     | . payload execution = 8437 s
[2026-03-17 02:16:01] 2026-03-17 06:15:28,575 | INFO     | . stage-out = 0 s
[2026-03-17 02:16:01] 2026-03-17 06:15:28,575 | INFO     | . log creation = 0 s
[2026-03-17 02:16:01] 2026-03-17 06:15:28,575 | INFO     | ..............................
[2026-03-17 02:16:01] 2026-03-17 06:15:28,660 | INFO     | 
[2026-03-17 02:16:01] 2026-03-17 06:15:28,660 | INFO     | job summary report
[2026-03-17 02:16:01] 2026-03-17 06:15:28,660 | INFO     | --------------------------------------------------
[2026-03-17 02:16:01] 2026-03-17 06:15:28,661 | INFO     | PanDA job id: 7056594673
[2026-03-17 02:16:01] 2026-03-17 06:15:28,661 | INFO     | task id: 48967102
[2026-03-17 02:16:01] 2026-03-17 06:15:28,661 | INFO     | errors: (none)
[2026-03-17 02:16:01] 2026-03-17 06:15:28,661 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 02:16:01] 2026-03-17 06:15:28,661 | INFO     | pilot state: finished 
[2026-03-17 02:16:01] 2026-03-17 06:15:28,662 | INFO     | transexitcode: 0
[2026-03-17 02:16:01] 2026-03-17 06:15:28,662 | INFO     | exeerrorcode: 0
[2026-03-17 02:16:01] 2026-03-17 06:15:28,662 | INFO     | exeerrordiag: 
[2026-03-17 02:16:01] 2026-03-17 06:15:28,662 | INFO     | exitcode: 0
[2026-03-17 02:16:01] 2026-03-17 06:15:28,662 | INFO     | exitmsg: OK
[2026-03-17 02:16:01] 2026-03-17 06:15:28,662 | INFO     | cpuconsumptiontime: 62864 s
[2026-03-17 02:16:01] 2026-03-17 06:15:28,663 | INFO     | nevents: 400
[2026-03-17 02:16:01] 2026-03-17 06:15:28,663 | INFO     | neventsw: 0
[2026-03-17 02:16:01] 2026-03-17 06:15:28,663 | INFO     | pid: 4814
[2026-03-17 02:16:01] 2026-03-17 06:15:28,663 | INFO     | pgrp: 4814
[2026-03-17 02:16:01] 2026-03-17 06:15:28,663 | INFO     | corecount: 8
[2026-03-17 02:16:01] 2026-03-17 06:15:28,663 | INFO     | event service: False
[2026-03-17 02:16:01] 2026-03-17 06:15:28,664 | INFO     | sizes: {0: 2279821, 1: 2280282, 12: 2280282, 8449: 2308142, 8450: 2308141, 8452: 2317379, 8454: 2317517}
[2026-03-17 02:16:01] 2026-03-17 06:15:28,664 | INFO     | --------------------------------------------------
[2026-03-17 02:16:01] 2026-03-17 06:15:28,664 | INFO     | 
[2026-03-17 02:16:01] 2026-03-17 06:15:28,664 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-17 02:16:01] 2026-03-17 06:15:28,693 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,693 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,693 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,693 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,694 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,694 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,694 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,694 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,694 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,695 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,695 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,695 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,695 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,695 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,696 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,696 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,696 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,696 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 02:16:01] 2026-03-17 06:15:28,696 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,696 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 02:16:01] 2026-03-17 06:15:28,697 | INFO     | job 7056594673 has completed (purged errors)
[2026-03-17 02:16:01] 2026-03-17 06:15:28,697 | INFO     | overall cleanup function is called
[2026-03-17 02:16:01] 2026-03-17 06:15:29,705 | INFO     | --- collectZombieJob: --- 10, [4814]
[2026-03-17 02:16:01] 2026-03-17 06:15:29,706 | INFO     | zombie collector waiting for pid 4814
[2026-03-17 02:16:01] 2026-03-17 06:15:29,707 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 02:16:01] 2026-03-17 06:15:29,707 | INFO     | collected zombie processes
[2026-03-17 02:16:01] 2026-03-17 06:15:29,707 | INFO     | will attempt to kill all subprocesses of pid=4814
[2026-03-17 02:16:01] 2026-03-17 06:15:29,890 | INFO     | process IDs to be killed: [4814] (in reverse order)
[2026-03-17 02:16:01] 2026-03-17 06:15:29,913 | WARNING  | process 4814 can no longer be monitored (due to stat problems) - aborting
[2026-03-17 02:16:01] 2026-03-17 06:15:29,952 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 02:16:01] 2026-03-17 06:15:29,952 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 02:16:01] 2026-03-17 06:15:29,962 | INFO     | did not find any defunct processes belonging to 4814
[2026-03-17 02:16:01] 2026-03-17 06:15:29,972 | INFO     | did not find any defunct processes belonging to 4814
[2026-03-17 02:16:01] 2026-03-17 06:15:29,972 | INFO     | ready for new job
[2026-03-17 02:16:01] 2026-03-17 06:15:29,973 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 02:16:01] 2026-03-17 06:15:29,976 | INFO     | **************************************
[2026-03-17 02:16:01] 2026-03-17 06:15:29,976 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 02:16:01] 2026-03-17 06:15:29,976 | INFO     | **************************************
[2026-03-17 02:16:01] 2026-03-17 06:15:29,976 | INFO     | 
[2026-03-17 02:16:01] 2026-03-17 06:15:29,977 | INFO     | architecture information:
[2026-03-17 02:16:01] 2026-03-17 06:15:29,977 | INFO     | executing command: cat /etc/os-release
[2026-03-17 02:16:01] 2026-03-17 06:15:29,996 | INFO     | cat /etc/os-release:
[2026-03-17 02:16:01] NAME="CentOS Linux"
[2026-03-17 02:16:01] VERSION="7 (Core)"
[2026-03-17 02:16:01] ID="centos"
[2026-03-17 02:16:01] ID_LIKE="rhel fedora"
[2026-03-17 02:16:01] VERSION_ID="7"
[2026-03-17 02:16:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 02:16:01] ANSI_COLOR="0;31"
[2026-03-17 02:16:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 02:16:01] HOME_URL="https://www.centos.org/"
[2026-03-17 02:16:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 02:16:01] 
[2026-03-17 02:16:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 02:16:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 02:16:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 02:16:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 02:16:01] 
[2026-03-17 02:16:01] 2026-03-17 06:15:29,997 | INFO     | **************************************
[2026-03-17 02:16:01] 2026-03-17 06:15:30,019 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 02:16:01] 2026-03-17 06:15:30,020 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 02:16:01] 2026-03-17 06:15:30,021 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-17 02:16:01] 2026-03-17 06:15:30,021 | WARNING  | maxPSS not found in memory monitor output
[2026-03-17 02:16:01] 2026-03-17 06:15:30,022 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/0/PanDA_Pilot-7056594673/payload.stdout) since it has not been created yet
[2026-03-17 02:16:01] 2026-03-17 06:15:30,022 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-17 02:16:01] 2026-03-17 06:15:30,041 | INFO     | sufficient remaining disk space (18533580800 B)
[2026-03-17 02:16:01] 2026-03-17 06:15:30,042 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-17 02:16:01] 2026-03-17 06:15:30,042 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-7056594673/HITS.48967102._001073.pool.root.1 since it does not exist
[2026-03-17 02:16:01] 2026-03-17 06:15:30,131 | INFO     | number of running child processes to parent process 4814: 1
[2026-03-17 02:16:01] 2026-03-17 06:15:30,131 | INFO     | maximum number of monitored processes: 6
[2026-03-17 02:16:01] 2026-03-17 06:15:30,132 | INFO     | aborting job monitoring since job object (job id=7056594673) has expired
[2026-03-17 02:16:01] 2026-03-17 06:15:30,498 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-17 02:16:01] 2026-03-17 06:15:30,517 | INFO     | sufficient remaining disk space (18533580800 B)
[2026-03-17 02:16:01] 2026-03-17 06:15:30,518 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 02:16:01] 2026-03-17 06:15:30,518 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 02:16:01] 2026-03-17 06:15:30,518 | INFO     | update_server=False
[2026-03-17 02:16:01] 2026-03-17 06:15:30,518 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 02:16:01] 2026-03-17 06:15:30,519 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 02:16:01] 2026-03-17 06:15:30,519 | INFO     | will abort loop
[2026-03-17 02:16:01] 2026-03-17 06:15:30,520 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 02:16:01] 2026-03-17 06:15:30,575 | INFO     | all job control threads have been joined
[2026-03-17 02:16:01] 2026-03-17 06:15:30,889 | INFO     | all data control threads have been joined
[2026-03-17 02:16:01] 2026-03-17 06:15:31,001 | INFO     | all payload control threads have been joined
[2026-03-17 02:16:01] 2026-03-17 06:15:31,524 | INFO     | [job] retrieve thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:31,525 | INFO     | [job] job monitor thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:31,525 | INFO     | [job] queue monitor thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:31,577 | INFO     | [payload] validate_post thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:31,580 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 02:16:01] 2026-03-17 06:15:31,581 | INFO     | [job] control thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:31,669 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:31,743 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:31,894 | INFO     | [data] control thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:31,913 | INFO     | [data] copytool_in thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:32,006 | INFO     | [payload] control thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:32,156 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:32,212 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 02:16:01] 2026-03-17 06:15:32,457 | INFO     | [job] validate thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:32,743 | INFO     | [payload] failed_post thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:32,966 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:33,586 | INFO     | [data] copytool_out thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:35,766 | INFO     | [monitor] cgroup control has ended
[2026-03-17 02:16:01] 2026-03-17 06:15:36,216 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 02:16:01] 2026-03-17 06:15:37,731 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140457795147584)>', '<ExcThread(monitor, started 140457325598464)>']
[2026-03-17 02:16:01] 2026-03-17 06:15:42,746 | INFO     | all workflow threads have been joined
[2026-03-17 02:16:01] 2026-03-17 06:15:42,747 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 02:16:01] 2026-03-17 06:15:42,747 | INFO     | traces error code: 0
[2026-03-17 02:16:01] 2026-03-17 06:15:42,748 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 02:16:01] 2026-03-17 06:16:01,239 | INFO     | PID=32754 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-17 02:16:01] 2026-03-17 06:16:01,239 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 02:16:01] 2026-03-17 06:16:01,239 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 02:16:01] 2026-03-17 06:16:01,239 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 02:16:01] 2026-03-17 06:16:01,239 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 02:16:01] 2026-03-17 06:16:01,239 | INFO     | [monitor] control thread has ended
[2026-03-17 02:16:01] 2026-03-17 06:16:01,387 [wrapper] ==== pilot stdout END ====
[2026-03-17 02:16:01] 2026-03-17 06:16:01,392 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 02:16:01] 2026-03-17 06:16:01,397 [wrapper] pilotpid: 32754
[2026-03-17 02:16:01] 2026-03-17 06:16:01,402 [wrapper] Pilot exit status: 0
[2026-03-17 02:16:01] 2026-03-17 06:16:01,431 [wrapper] pandaids: 7056594673
[2026-03-17 02:16:01] 2026-03-17 06:16:01,478 [wrapper] cleanup supervisor_pilot 23480 32755
[2026-03-17 02:16:01] 2026-03-17 06:16:01,483 [wrapper] Test setup, not cleaning
[2026-03-17 02:16:01] 2026-03-17 06:16:01,487 [wrapper] apfmon messages muted
[2026-03-17 02:16:01] 2026-03-17 06:16:01,492 [wrapper] ==== wrapper stdout END ====
[2026-03-17 02:16:01] 2026-03-17 06:16:01,496 [wrapper] ==== wrapper stderr END ====
[2026-03-17 02:16:01]  *** Error codes and diagnostics ***
[2026-03-17 02:16:01]     "exeErrorCode": 0,
[2026-03-17 02:16:01]     "exeErrorDiag": "",
[2026-03-17 02:16:01]     "pilotErrorCode": 0,
[2026-03-17 02:16:01]     "pilotErrorDiag": "",
[2026-03-17 02:16:01]  *** Listing of results directory ***
[2026-03-17 02:16:01] total 405724
[2026-03-17 02:16:01] -rw-r--r-- 1 boincer umatlas    585013 Mar 16 03:59 pilot3.tar.gz
[2026-03-17 02:16:01] -rwx------ 1 boincer umatlas     36322 Mar 16 04:02 runpilot2-wrapper.sh
[2026-03-17 02:16:01] -rw-r--r-- 1 boincer umatlas      5111 Mar 16 04:02 queuedata.json
[2026-03-17 02:16:01] -rw-r--r-- 1 boincer umatlas       100 Mar 16 23:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 02:16:01] -rwxr-xr-x 1 boincer umatlas      7986 Mar 16 23:53 run_atlas
[2026-03-17 02:16:01] -rw-r--r-- 1 boincer umatlas       105 Mar 16 23:53 job.xml
[2026-03-17 02:16:01] -rw-r--r-- 2 boincer umatlas 213122400 Mar 16 23:53 EVNT.48967100._000042.pool.root.1
[2026-03-17 02:16:01] -rw-r--r-- 2 boincer umatlas     15845 Mar 16 23:53 start_atlas.sh
[2026-03-17 02:16:01] drwxrwx--x 2 boincer umatlas      4096 Mar 16 23:53 shared
[2026-03-17 02:16:01] -rw-r--r-- 2 boincer umatlas    597525 Mar 16 23:53 input.tar.gz
[2026-03-17 02:16:01] -rw-r--r-- 1 boincer umatlas         0 Mar 16 23:53 boinc_lockfile
[2026-03-17 02:16:01] -rw-r--r-- 1 boincer umatlas      2578 Mar 16 23:53 pandaJob.out
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas        57 Mar 16 23:53 setup.sh.local
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas   1006418 Mar 16 23:54 agis_schedconf.cvmfs.json
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas   1511579 Mar 16 23:54 agis_ddmendpoints.agis.ALL.json
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas       431 Mar 16 23:54 workernode_map.json
[2026-03-17 02:16:01] drwx------ 5 boincer umatlas      4096 Mar 16 23:54 pilot3
[2026-03-17 02:16:01] -rw-r--r-- 1 boincer umatlas      5909 Mar 17 02:13 init_data.xml
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas 195268581 Mar 17 02:14 HITS.48967102._001073.pool.root.1
[2026-03-17 02:16:01] -rw-r--r-- 1 boincer umatlas       529 Mar 17 02:15 boinc_task_state.xml
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas        95 Mar 17 02:15 pilot_heartbeat.json
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas      1068 Mar 17 02:15 memory_monitor_summary.json
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas    379268 Mar 17 02:15 log.48967102._001073.job.log.tgz.1
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas      6401 Mar 17 02:15 heartbeat.json
[2026-03-17 02:16:01] -rw-r--r-- 1 boincer umatlas      8192 Mar 17 02:15 boinc_mmap_file
[2026-03-17 02:16:01] -rw-r--r-- 1 boincer umatlas        27 Mar 17 02:15 wrapper_checkpoint.txt
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas       745 Mar 17 02:16 pilotlog.txt
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas   1189101 Mar 17 02:16 log.48967102._001073.job.log.1
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas       357 Mar 17 02:16 output.list
[2026-03-17 02:16:01] -rw-r--r-- 1 boincer umatlas       620 Mar 17 02:16 runtime_log
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas   1587200 Mar 17 02:16 result.tar.gz
[2026-03-17 02:16:01] -rw-r--r-- 1 boincer umatlas      9341 Mar 17 02:16 runtime_log.err
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas       660 Mar 17 02:16 rGCMDmd5HM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmTdsLDmdsGwOm.diag
[2026-03-17 02:16:01] -rw-r--r-- 1 boincer umatlas     21378 Mar 17 02:16 stderr.txt
[2026-03-17 02:16:01] HITS file was successfully produced:
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas 195268581 Mar 17 02:14 shared/HITS.pool.root.1
[2026-03-17 02:16:01]  *** Contents of shared directory: ***
[2026-03-17 02:16:01] total 400976
[2026-03-17 02:16:01] -rw-r--r-- 2 boincer umatlas 213122400 Mar 16 23:53 ATLAS.root_0
[2026-03-17 02:16:01] -rw-r--r-- 2 boincer umatlas     15845 Mar 16 23:53 start_atlas.sh
[2026-03-17 02:16:01] -rw-r--r-- 2 boincer umatlas    597525 Mar 16 23:53 input.tar.gz
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas 195268581 Mar 17 02:14 HITS.pool.root.1
[2026-03-17 02:16:01] -rw------- 1 boincer umatlas   1587200 Mar 17 02:16 result.tar.gz
02:16:03 (28919): run_atlas exited; CPU time 62840.239848
02:16:03 (28919): called boinc_finish(0)

</stderr_txt>
]]>

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