Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:48:05 (3729477): wrapper (7.7.26015): starting
21:48:05 (3729477): wrapper: running run_atlas (--nthreads 8)
[2026-03-15 21:48:05] Arguments: --nthreads 8
[2026-03-15 21:48:05] Threads: 8
[2026-03-15 21:48:05] Checking for CVMFS
[2026-03-15 21:48:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 21:48:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 21:48:05] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 21:48:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 21:48:06] 2.13.3.0 10781 114308 222176 157335 0 29 37671163 39288832 4245 16776704 0 107892580 99.489 148190628 34276 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-15 21:48:06] CVMFS is ok
[2026-03-15 21:48:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 21:48:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 21:48:06] Further information can be found at the LHC@home message board.
[2026-03-15 21:48:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 21:48:06] Checking for apptainer binary...
[2026-03-15 21:48:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 21:48:06] Running /usr/bin/apptainer --version
[2026-03-15 21:48:06] apptainer version 1.4.5-2.el9
[2026-03-15 21:48:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 21:48:06] c-211-2.aglt2.org
[2026-03-15 21:48:06] apptainer works
[2026-03-15 21:48:06] Set ATHENA_PROC_NUMBER=8
[2026-03-15 21:48:06] Set ATHENA_CORE_NUMBER=8
[2026-03-15 21:48:06] Starting ATLAS job with PandaID=7046197337
[2026-03-15 21:48:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 22:45:27]  *** The last 200 lines of the pilot log: ***
[2026-03-15 22:45:27]  is_tar=False
[2026-03-15 22:45:27]  lfn=log.48955015._023581.job.log.tgz.1
[2026-03-15 22:45:27]  mtime=0
[2026-03-15 22:45:27]  protocol_id=None
[2026-03-15 22:45:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-15 22:45:27]  replicas=None
[2026-03-15 22:45:27]  scope=mc23_13p6TeV
[2026-03-15 22:45:27]  status=None
[2026-03-15 22:45:27]  status_code=0
[2026-03-15 22:45:27]  storage_token=
[2026-03-15 22:45:27]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7046197337/log.48955015._023581.job.log.tgz.1
[2026-03-15 22:45:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fd/3e/log.48955015._023581.job.log.tgz.1
[2026-03-15 22:45:27]  workdir=None
[2026-03-15 22:45:27] ]
[2026-03-15 22:45:27] 2026-03-16 02:44:50,347 | INFO     | transferring file log.48955015._023581.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7046197337/log.48955015._023581.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-15 22:45:27] 2026-03-16 02:44:50,347 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7046197337/log.48955015._023581.job.log.tgz.1 /tmp/boinchome/slots/0/log.48955015._023581.job
[2026-03-15 22:45:27] 2026-03-16 02:44:50,359 | INFO     | adding to output.list: log.48955015._023581.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fd/3e/log.48955015._023581.job.log.tg
[2026-03-15 22:45:27] 2026-03-16 02:44:50,359 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-15 22:45:27] 2026-03-16 02:44:50,359 | INFO     | summary of transferred files:
[2026-03-15 22:45:27] 2026-03-16 02:44:50,359 | INFO     |  -- lfn=log.48955015._023581.job.log.tgz.1, status_code=0, status=transferred
[2026-03-15 22:45:27] 2026-03-16 02:44:50,360 | INFO     | stage-out finished correctly
[2026-03-15 22:45:27] 2026-03-16 02:44:51,697 | INFO     | time since job start (3396s) is within the limit (345600.0s)
[2026-03-15 22:45:27] 2026-03-16 02:44:52,630 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-15 22:45:27] 2026-03-16 02:44:53,703 | INFO     | time since job start (3398s) is within the limit (345600.0s)
[2026-03-15 22:45:27] 2026-03-16 02:44:53,907 | INFO     | job 7046197337 has state=finished
[2026-03-15 22:45:27] 2026-03-16 02:44:53,907 | INFO     | preparing for final server update for job 7046197337 in state='finished'
[2026-03-15 22:45:27] 2026-03-16 02:44:53,907 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7046197337/jobReport.json
[2026-03-15 22:45:27] 2026-03-16 02:44:53,909 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-15 22:45:27] 2026-03-16 02:44:53,909 | INFO     | this job has now completed (state=finished)
[2026-03-15 22:45:27] 2026-03-16 02:44:53,909 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 22:45:27] 2026-03-16 02:44:53,909 | INFO     | log transfer has been attempted: DONE
[2026-03-15 22:45:27] 2026-03-16 02:44:53,909 | INFO     | job 7046197337 has finished - writing final server update
[2026-03-15 22:45:27] 2026-03-16 02:44:53,910 | INFO     | total number of processed events: 400 (read)
[2026-03-15 22:45:27] 2026-03-16 02:44:53,913 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7046197337/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 22:45:27] 2026-03-16 02:44:53,914 | INFO     | extracted standard info from prmon json
[2026-03-15 22:45:27] 2026-03-16 02:44:53,914 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 22:45:27] 2026-03-16 02:44:53,914 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 22:45:27] 2026-03-16 02:44:53,914 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 22:45:27] 2026-03-16 02:44:53,914 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 22:45:27] 2026-03-16 02:44:53,915 | INFO     | fitting pss+swap vs Time
[2026-03-15 22:45:27] 2026-03-16 02:44:53,915 | INFO     | sum of square deviations: 36465800.0
[2026-03-15 22:45:27] 2026-03-16 02:44:53,915 | INFO     | sum of deviations: -7221826478.0
[2026-03-15 22:45:27] 2026-03-16 02:44:53,915 | INFO     | mean x: 1773627482.0
[2026-03-15 22:45:27] 2026-03-16 02:44:53,915 | INFO     | mean y: 2740604.7959183673
[2026-03-15 22:45:27] 2026-03-16 02:44:53,915 | INFO     | intersect: 351258709529.5437
[2026-03-15 22:45:27] 2026-03-16 02:44:53,916 | INFO     | chi2: 0.07904090537259555
[2026-03-15 22:45:27] 2026-03-16 02:44:53,916 | INFO     | current memory leak: -198.04 B/s (using 49 data points, chi2=0.08)
[2026-03-15 22:45:27] 2026-03-16 02:44:53,916 | INFO     | could have reported an average CPU frequency of 2916 MHz (5 samples)
[2026-03-15 22:45:27] 2026-03-16 02:44:53,916 | INFO     | ..............................
[2026-03-15 22:45:27] 2026-03-16 02:44:53,916 | INFO     | . Timing measurements:
[2026-03-15 22:45:27] 2026-03-16 02:44:53,916 | INFO     | . get job = 0 s
[2026-03-15 22:45:27] 2026-03-16 02:44:53,916 | INFO     | . initial setup = 4 s
[2026-03-15 22:45:27] 2026-03-16 02:44:53,916 | INFO     | . payload setup = 3 s
[2026-03-15 22:45:27] 2026-03-16 02:44:53,916 | INFO     | . stage-in = 0 s
[2026-03-15 22:45:27] 2026-03-16 02:44:53,916 | INFO     | . payload execution = 3376 s
[2026-03-15 22:45:27] 2026-03-16 02:44:53,916 | INFO     | . stage-out = 0 s
[2026-03-15 22:45:27] 2026-03-16 02:44:53,916 | INFO     | . log creation = 0 s
[2026-03-15 22:45:27] 2026-03-16 02:44:53,916 | INFO     | ..............................
[2026-03-15 22:45:27] 2026-03-16 02:44:54,054 | INFO     | 
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | job summary report
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | --------------------------------------------------
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | PanDA job id: 7046197337
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | task id: 48955015
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | errors: (none)
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | pilot state: finished 
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | transexitcode: 0
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | exeerrorcode: 0
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | exeerrordiag: 
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | exitcode: 0
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | exitmsg: OK
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | cpuconsumptiontime: 25089 s
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | nevents: 400
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | neventsw: 0
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | pid: 3737539
[2026-03-15 22:45:27] 2026-03-16 02:44:54,055 | INFO     | pgrp: 3737539
[2026-03-15 22:45:27] 2026-03-16 02:44:54,056 | INFO     | corecount: 8
[2026-03-15 22:45:27] 2026-03-16 02:44:54,056 | INFO     | event service: False
[2026-03-15 22:45:27] 2026-03-16 02:44:54,056 | INFO     | sizes: {0: 2280234, 11: 2280234, 3383: 2305916, 3384: 2314914, 3386: 2314970, 3387: 2315196}
[2026-03-15 22:45:27] 2026-03-16 02:44:54,056 | INFO     | --------------------------------------------------
[2026-03-15 22:45:27] 2026-03-16 02:44:54,056 | INFO     | 
[2026-03-15 22:45:27] 2026-03-16 02:44:54,056 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-15 22:45:27] 2026-03-16 02:44:54,067 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,067 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,067 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,067 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,067 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,067 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,067 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 22:45:27] 2026-03-16 02:44:54,068 | INFO     | job 7046197337 has completed (purged errors)
[2026-03-15 22:45:27] 2026-03-16 02:44:54,069 | INFO     | overall cleanup function is called
[2026-03-15 22:45:27] 2026-03-16 02:44:55,075 | INFO     | --- collectZombieJob: --- 10, [3737539]
[2026-03-15 22:45:27] 2026-03-16 02:44:55,076 | INFO     | zombie collector waiting for pid 3737539
[2026-03-15 22:45:27] 2026-03-16 02:44:55,076 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 22:45:27] 2026-03-16 02:44:55,076 | INFO     | collected zombie processes
[2026-03-15 22:45:27] 2026-03-16 02:44:55,076 | INFO     | will attempt to kill all subprocesses of pid=3737539
[2026-03-15 22:45:27] 2026-03-16 02:44:55,204 | INFO     | process IDs to be killed: [3737539] (in reverse order)
[2026-03-15 22:45:27] 2026-03-16 02:44:55,243 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 22:45:27] 2026-03-16 02:44:55,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 22:45:27] 2026-03-16 02:44:55,247 | INFO     | did not find any defunct processes belonging to 3737539
[2026-03-15 22:45:27] 2026-03-16 02:44:55,250 | INFO     | did not find any defunct processes belonging to 3737539
[2026-03-15 22:45:27] 2026-03-16 02:44:55,250 | INFO     | ready for new job
[2026-03-15 22:45:27] 2026-03-16 02:44:55,250 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 22:45:27] 2026-03-16 02:44:55,251 | INFO     | **************************************
[2026-03-15 22:45:27] 2026-03-16 02:44:55,251 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 22:45:27] 2026-03-16 02:44:55,252 | INFO     | **************************************
[2026-03-15 22:45:27] 2026-03-16 02:44:55,252 | INFO     | 
[2026-03-15 22:45:27] 2026-03-16 02:44:55,253 | INFO     | architecture information:
[2026-03-15 22:45:27] 2026-03-16 02:44:55,253 | INFO     | executing command: cat /etc/os-release
[2026-03-15 22:45:27] 2026-03-16 02:44:55,260 | INFO     | cat /etc/os-release:
[2026-03-15 22:45:27] NAME="CentOS Linux"
[2026-03-15 22:45:27] VERSION="7 (Core)"
[2026-03-15 22:45:27] ID="centos"
[2026-03-15 22:45:27] ID_LIKE="rhel fedora"
[2026-03-15 22:45:27] VERSION_ID="7"
[2026-03-15 22:45:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 22:45:27] ANSI_COLOR="0;31"
[2026-03-15 22:45:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 22:45:27] HOME_URL="https://www.centos.org/"
[2026-03-15 22:45:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 22:45:27] 
[2026-03-15 22:45:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 22:45:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 22:45:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 22:45:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 22:45:27] 
[2026-03-15 22:45:27] 2026-03-16 02:44:55,260 | INFO     | **************************************
[2026-03-15 22:45:27] 2026-03-16 02:44:55,705 | WARNING  | process 3737539 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 22:45:27] 2026-03-16 02:44:55,763 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-15 22:45:27] 2026-03-16 02:44:55,772 | INFO     | sufficient remaining disk space (53377761280 B)
[2026-03-15 22:45:27] 2026-03-16 02:44:55,773 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 22:45:27] 2026-03-16 02:44:55,773 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 22:45:27] 2026-03-16 02:44:55,773 | INFO     | update_server=False
[2026-03-15 22:45:27] 2026-03-16 02:44:55,773 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 22:45:27] 2026-03-16 02:44:55,773 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 22:45:27] 2026-03-16 02:44:55,816 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 22:45:27] 2026-03-16 02:44:55,920 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 22:45:27] 2026-03-16 02:44:55,944 | INFO     | number of running child processes to parent process 3737539: 1
[2026-03-15 22:45:27] 2026-03-16 02:44:55,945 | INFO     | maximum number of monitored processes: 6
[2026-03-15 22:45:27] 2026-03-16 02:44:55,945 | INFO     | aborting job monitoring since job object (job id=7046197337) has expired
[2026-03-15 22:45:27] 2026-03-16 02:44:55,945 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 22:45:27] 2026-03-16 02:44:55,945 | INFO     | will abort loop
[2026-03-15 22:45:27] 2026-03-16 02:44:56,639 | INFO     | all data control threads have been joined
[2026-03-15 22:45:27] 2026-03-16 02:44:56,779 | INFO     | [job] retrieve thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:56,779 | INFO     | [job] queue monitor thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:56,826 | INFO     | [payload] validate_post thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:56,840 | INFO     | all job control threads have been joined
[2026-03-15 22:45:27] 2026-03-16 02:44:56,876 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:56,950 | INFO     | [job] job monitor thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:57,096 | INFO     | [data] copytool_in thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:57,143 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:57,277 | INFO     | all payload control threads have been joined
[2026-03-15 22:45:27] 2026-03-16 02:44:57,405 | INFO     | [payload] failed_post thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:57,644 | INFO     | [data] control thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:57,845 | INFO     | [job] control thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:57,872 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:57,925 | INFO     | [data] copytool_out thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:58,158 | INFO     | [job] validate thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:58,281 | INFO     | [payload] control thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:44:58,686 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 22:45:27] 2026-03-16 02:45:02,691 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:45:06,437 | INFO     | job.realtimelogging is not enabled
[2026-03-15 22:45:27] 2026-03-16 02:45:07,442 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 22:45:27] 2026-03-16 02:45:19,666 | INFO     | [monitor] cgroup control has ended
[2026-03-15 22:45:27] 2026-03-16 02:45:21,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140720047224640)>', '<ExcThread(monitor, started 140719662540544)>']
[2026-03-15 22:45:27] 2026-03-16 02:45:25,772 | INFO     | 3404s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-15 22:45:27] 2026-03-16 02:45:26,538 | INFO     | all workflow threads have been joined
[2026-03-15 22:45:27] 2026-03-16 02:45:26,538 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 22:45:27] 2026-03-16 02:45:26,538 | INFO     | traces error code: 0
[2026-03-15 22:45:27] 2026-03-16 02:45:26,539 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 22:45:27] 2026-03-16 02:45:26,946 | INFO     | PID=3733159 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 22:45:27] 2026-03-16 02:45:26,946 | INFO     | .. there are 9 such processes running
[2026-03-15 22:45:27] 2026-03-16 02:45:26,946 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 22:45:27] 2026-03-16 02:45:26,947 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 22:45:27] 2026-03-16 02:45:26,947 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 22:45:27] 2026-03-16 02:45:26,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 22:45:27] 2026-03-16 02:45:26,947 | INFO     | [monitor] control thread has ended
[2026-03-15 22:45:27] 2026-03-16 02:45:27,025 [wrapper] ==== pilot stdout END ====
[2026-03-15 22:45:27] 2026-03-16 02:45:27,028 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 22:45:27] 2026-03-16 02:45:27,029 [wrapper] pilotpid: 3733159
[2026-03-15 22:45:27] 2026-03-16 02:45:27,031 [wrapper] Pilot exit status: 0
[2026-03-15 22:45:27] 2026-03-16 02:45:27,038 [wrapper] pandaids: 7046197337
[2026-03-15 22:45:27] 2026-03-16 02:45:27,064 [wrapper] cleanup supervisor_pilot 3835179 3733160
[2026-03-15 22:45:27] 2026-03-16 02:45:27,066 [wrapper] Test setup, not cleaning
[2026-03-15 22:45:27] 2026-03-16 02:45:27,068 [wrapper] apfmon messages muted
[2026-03-15 22:45:27] 2026-03-16 02:45:27,070 [wrapper] ==== wrapper stdout END ====
[2026-03-15 22:45:27] 2026-03-16 02:45:27,072 [wrapper] ==== wrapper stderr END ====
[2026-03-15 22:45:27]  *** Error codes and diagnostics ***
[2026-03-15 22:45:27]     "exeErrorCode": 0,
[2026-03-15 22:45:27]     "exeErrorDiag": "",
[2026-03-15 22:45:27]     "pilotErrorCode": 0,
[2026-03-15 22:45:27]     "pilotErrorDiag": "",
[2026-03-15 22:45:27]  *** Listing of results directory ***
[2026-03-15 22:45:27] total 616264
[2026-03-15 22:45:27] -rw-r--r--. 1 boincer umatlas    585013 Mar 14 00:19 pilot3.tar.gz
[2026-03-15 22:45:27] -rwx------. 1 boincer umatlas     36322 Mar 14 00:20 runpilot2-wrapper.sh
[2026-03-15 22:45:27] -rw-r--r--. 1 boincer umatlas      5111 Mar 14 00:21 queuedata.json
[2026-03-15 22:45:27] -rw-r--r--. 1 boincer umatlas       100 Mar 15 21:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 22:45:27] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 15 21:48 run_atlas
[2026-03-15 22:45:27] -rw-r--r--. 1 boincer umatlas       105 Mar 15 21:48 job.xml
[2026-03-15 22:45:27] -rw-r--r--. 2 boincer umatlas 441203296 Mar 15 21:48 EVNT.46701403._002529.pool.root.1
[2026-03-15 22:45:27] -rw-r--r--. 2 boincer umatlas     15845 Mar 15 21:48 start_atlas.sh
[2026-03-15 22:45:27] drwxrwx--x. 2 boincer umatlas      4096 Mar 15 21:48 shared
[2026-03-15 22:45:27] -rw-r--r--. 2 boincer umatlas    597535 Mar 15 21:48 input.tar.gz
[2026-03-15 22:45:27] -rw-r--r--. 1 boincer umatlas         0 Mar 15 21:48 boinc_lockfile
[2026-03-15 22:45:27] -rw-r--r--. 1 boincer umatlas      2570 Mar 15 21:48 pandaJob.out
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas        57 Mar 15 21:48 setup.sh.local
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas   1006471 Mar 15 21:48 agis_schedconf.cvmfs.json
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas   1511579 Mar 15 21:48 agis_ddmendpoints.agis.ALL.json
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas       440 Mar 15 21:48 workernode_map.json
[2026-03-15 22:45:27] drwx------. 5 boincer umatlas      4096 Mar 15 21:48 pilot3
[2026-03-15 22:45:27] -rw-r--r--. 1 boincer umatlas      6660 Mar 15 22:38 init_data.xml
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas 184291058 Mar 15 22:44 HITS.48955015._023581.pool.root.1
[2026-03-15 22:45:27] -rw-r--r--. 1 boincer umatlas       530 Mar 15 22:44 boinc_task_state.xml
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas      1036 Mar 15 22:44 memory_monitor_summary.json
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas    295447 Mar 15 22:44 log.48955015._023581.job.log.tgz.1
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas        95 Mar 15 22:44 pilot_heartbeat.json
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas      6384 Mar 15 22:44 heartbeat.json
[2026-03-15 22:45:27] -rw-r--r--. 1 boincer umatlas      8192 Mar 15 22:45 boinc_mmap_file
[2026-03-15 22:45:27] -rw-r--r--. 1 boincer umatlas        27 Mar 15 22:45 wrapper_checkpoint.txt
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas       822 Mar 15 22:45 pilotlog.txt
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas    519715 Mar 15 22:45 log.48955015._023581.job.log.1
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas       357 Mar 15 22:45 output.list
[2026-03-15 22:45:27] -rw-r--r--. 1 boincer umatlas       620 Mar 15 22:45 runtime_log
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas    829440 Mar 15 22:45 result.tar.gz
[2026-03-15 22:45:27] -rw-r--r--. 1 boincer umatlas      9336 Mar 15 22:45 runtime_log.err
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas       649 Mar 15 22:45 M4EMDmgfVL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmK4rLDm9lb1im.diag
[2026-03-15 22:45:27] -rw-r--r--. 1 boincer umatlas     21560 Mar 15 22:45 stderr.txt
[2026-03-15 22:45:27] HITS file was successfully produced:
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas 184291058 Mar 15 22:44 shared/HITS.pool.root.1
[2026-03-15 22:45:27]  *** Contents of shared directory: ***
[2026-03-15 22:45:27] total 612252
[2026-03-15 22:45:27] -rw-r--r--. 2 boincer umatlas 441203296 Mar 15 21:48 ATLAS.root_0
[2026-03-15 22:45:27] -rw-r--r--. 2 boincer umatlas     15845 Mar 15 21:48 start_atlas.sh
[2026-03-15 22:45:27] -rw-r--r--. 2 boincer umatlas    597535 Mar 15 21:48 input.tar.gz
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas 184291058 Mar 15 22:44 HITS.pool.root.1
[2026-03-15 22:45:27] -rw-------. 1 boincer umatlas    829440 Mar 15 22:45 result.tar.gz
22:45:28 (3729477): run_atlas exited; CPU time 25124.655110
22:45:28 (3729477): called boinc_finish(0)

</stderr_txt>
]]>

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