Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
06:45:04 (191432): wrapper (7.7.26015): starting
06:45:04 (191432): wrapper: running run_atlas (--nthreads 12)
[2026-03-18 06:45:04] Arguments: --nthreads 12
[2026-03-18 06:45:04] Threads: 12
[2026-03-18 06:45:04] Checking for CVMFS
[2026-03-18 06:45:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 06:45:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 06:45:06] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 06:45:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 06:45:08] 2.13.1.0 137823 18784 79716 157405 2 188 3884672 4096000 1859 130560 0 25007641 99.994 826108 4376 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-03-18 06:45:08] CVMFS is ok
[2026-03-18 06:45:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 06:45:08] Checking for apptainer binary...
[2026-03-18 06:45:08] apptainer is not installed, using version from CVMFS
[2026-03-18 06:45:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 06:45:09] ryzen7
[2026-03-18 06:45:09] apptainer works
[2026-03-18 06:45:09] Set ATHENA_PROC_NUMBER=12
[2026-03-18 06:45:09] Set ATHENA_CORE_NUMBER=12
[2026-03-18 06:45:09] Starting ATLAS job with PandaID=7056140280
[2026-03-18 06:45:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31419/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 08:23:41]  *** The last 200 lines of the pilot log: ***
[2026-03-18 08:23:41]  is_tar=False
[2026-03-18 08:23:41]  lfn=log.48955010._052647.job.log.tgz.1
[2026-03-18 08:23:41]  mtime=0
[2026-03-18 08:23:41]  protocol_id=None
[2026-03-18 08:23:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-18 08:23:41]  replicas=None
[2026-03-18 08:23:41]  scope=mc23_13p6TeV
[2026-03-18 08:23:41]  status=None
[2026-03-18 08:23:41]  status_code=0
[2026-03-18 08:23:41]  storage_token=
[2026-03-18 08:23:41]  surl=/opt/boinc/instance_homes/boinc_31419/slots/0/PanDA_Pilot-7056140280/log.48955010._052647.job.log.tgz.1
[2026-03-18 08:23:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c2/11/log.48955010._052647.job.log.tgz.1
[2026-03-18 08:23:41]  workdir=None
[2026-03-18 08:23:41] ]
[2026-03-18 08:23:41] 2026-03-18 08:22:36,423 | INFO     | transferring file log.48955010._052647.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31419/slots/0/PanDA_Pilot-7056140280/log.48955010._052647.job.log.tgz.1 t
[2026-03-18 08:23:41] 2026-03-18 08:22:36,423 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31419/slots/0/PanDA_Pilot-7056140280/log.48955010._052647.job.log.tgz.1 /opt/boinc/instance_home
[2026-03-18 08:23:41] 2026-03-18 08:22:36,820 | INFO     | adding to output.list: log.48955010._052647.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c2/11/log.48955010._052647.job.log.tg
[2026-03-18 08:23:41] 2026-03-18 08:22:36,820 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-18 08:23:41] 2026-03-18 08:22:36,820 | INFO     | summary of transferred files:
[2026-03-18 08:23:41] 2026-03-18 08:22:36,820 | INFO     |  -- lfn=log.48955010._052647.job.log.tgz.1, status_code=0, status=transferred
[2026-03-18 08:23:41] 2026-03-18 08:22:36,820 | INFO     | stage-out finished correctly
[2026-03-18 08:23:41] 2026-03-18 08:22:37,398 | INFO     | time since job start (5712s) is within the limit (345600.0s)
[2026-03-18 08:23:41] 2026-03-18 08:22:37,542 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-18 08:23:41] 2026-03-18 08:22:38,008 | WARNING  | process 208799 can no longer be monitored (due to stat problems) - aborting
[2026-03-18 08:23:41] 2026-03-18 08:22:38,009 | INFO     | using path: /opt/boinc/instance_homes/boinc_31419/slots/0/PanDA_Pilot-7056140280/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 08:23:41] 2026-03-18 08:22:38,076 | INFO     | number of running child processes to parent process 208799: 1
[2026-03-18 08:23:41] 2026-03-18 08:22:38,076 | INFO     | maximum number of monitored processes: 6
[2026-03-18 08:23:41] 2026-03-18 08:22:38,130 | INFO     | job 7056140280 has state=finished
[2026-03-18 08:23:41] 2026-03-18 08:22:38,130 | INFO     | preparing for final server update for job 7056140280 in state='finished'
[2026-03-18 08:23:41] 2026-03-18 08:22:38,707 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-18 08:23:41] 2026-03-18 08:22:38,707 | INFO     | reading metadata from: /opt/boinc/instance_homes/boinc_31419/slots/0/PanDA_Pilot-7056140280/jobReport.json
[2026-03-18 08:23:41] 2026-03-18 08:22:38,709 | INFO     | added worker_node to metadata from /opt/boinc/instance_homes/boinc_31419/slots/0/workernode_map.json
[2026-03-18 08:23:41] 2026-03-18 08:22:38,709 | INFO     | this job has now completed (state=finished)
[2026-03-18 08:23:41] 2026-03-18 08:22:38,709 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-18 08:23:41] 2026-03-18 08:22:38,709 | INFO     | log transfer has been attempted: DONE
[2026-03-18 08:23:41] 2026-03-18 08:22:38,709 | INFO     | job 7056140280 has finished - writing final server update
[2026-03-18 08:23:41] 2026-03-18 08:22:38,709 | INFO     | total number of processed events: 400 (read)
[2026-03-18 08:23:41] 2026-03-18 08:22:38,732 | INFO     | using path: /opt/boinc/instance_homes/boinc_31419/slots/0/PanDA_Pilot-7056140280/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 08:23:41] 2026-03-18 08:22:38,732 | INFO     | extracted standard info from prmon json
[2026-03-18 08:23:41] 2026-03-18 08:22:38,732 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 08:23:41] 2026-03-18 08:22:38,732 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 08:23:41] 2026-03-18 08:22:38,732 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 08:23:41] 2026-03-18 08:22:38,732 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 08:23:41] 2026-03-18 08:22:38,733 | INFO     | fitting pss+swap vs Time
[2026-03-18 08:23:41] 2026-03-18 08:22:38,734 | INFO     | sum of square deviations: 183761585.0
[2026-03-18 08:23:41] 2026-03-18 08:22:38,734 | INFO     | sum of deviations: 844730562.0000001
[2026-03-18 08:23:41] 2026-03-18 08:22:38,734 | INFO     | mean x: 1773819440.5
[2026-03-18 08:23:41] 2026-03-18 08:22:38,734 | INFO     | mean y: 2675940.9285714286
[2026-03-18 08:23:41] 2026-03-18 08:22:38,734 | INFO     | intersect: -8151365029.386801
[2026-03-18 08:23:41] 2026-03-18 08:22:38,734 | INFO     | chi2: 0.0599866806856637
[2026-03-18 08:23:41] 2026-03-18 08:22:38,734 | INFO     | current memory leak: 4.60 B/s (using 84 data points, chi2=0.06)
[2026-03-18 08:23:41] 2026-03-18 08:22:38,734 | INFO     | could have reported an average CPU frequency of 4316 MHz (7 samples)
[2026-03-18 08:23:41] 2026-03-18 08:22:38,735 | INFO     | ..............................
[2026-03-18 08:23:41] 2026-03-18 08:22:38,735 | INFO     | . Timing measurements:
[2026-03-18 08:23:41] 2026-03-18 08:22:38,735 | INFO     | . get job = 0 s
[2026-03-18 08:23:41] 2026-03-18 08:22:38,735 | INFO     | . initial setup = 45 s
[2026-03-18 08:23:41] 2026-03-18 08:22:38,735 | INFO     | . payload setup = 118 s
[2026-03-18 08:23:41] 2026-03-18 08:22:38,735 | INFO     | . stage-in = 0 s
[2026-03-18 08:23:41] 2026-03-18 08:22:38,735 | INFO     | . payload execution = 5586 s
[2026-03-18 08:23:41] 2026-03-18 08:22:38,735 | INFO     | . stage-out = 0 s
[2026-03-18 08:23:41] 2026-03-18 08:22:38,735 | INFO     | . log creation = 0 s
[2026-03-18 08:23:41] 2026-03-18 08:22:38,735 | INFO     | ..............................
[2026-03-18 08:23:41] 2026-03-18 08:22:38,792 | INFO     | 
[2026-03-18 08:23:41] 2026-03-18 08:22:38,792 | INFO     | job summary report
[2026-03-18 08:23:41] 2026-03-18 08:22:38,792 | INFO     | --------------------------------------------------
[2026-03-18 08:23:41] 2026-03-18 08:22:38,792 | INFO     | PanDA job id: 7056140280
[2026-03-18 08:23:41] 2026-03-18 08:22:38,792 | INFO     | task id: 48955010
[2026-03-18 08:23:41] 2026-03-18 08:22:38,792 | INFO     | errors: (none)
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | pilot state: finished 
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | transexitcode: 0
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | exeerrorcode: 0
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | exeerrordiag: 
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | exitcode: 0
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | exitmsg: OK
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | cpuconsumptiontime: 22296 s
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | nevents: 400
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | neventsw: 0
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | pid: 208799
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | pgrp: 208799
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | corecount: 12
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | event service: False
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | sizes: {0: 2271837, 1: 2280178, 5708: 2306787, 5709: 2306786, 5710: 2315942, 5711: 2316080}
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | --------------------------------------------------
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | 
[2026-03-18 08:23:41] 2026-03-18 08:22:38,793 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31419/slots/0
[2026-03-18 08:23:41] 2026-03-18 08:22:38,805 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,806 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,807 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,807 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 08:23:41] 2026-03-18 08:22:38,807 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,807 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 08:23:41] 2026-03-18 08:22:38,807 | INFO     | job 7056140280 has completed (purged errors)
[2026-03-18 08:23:41] 2026-03-18 08:22:38,807 | INFO     | overall cleanup function is called
[2026-03-18 08:23:41] 2026-03-18 08:22:39,814 | INFO     | --- collectZombieJob: --- 10, [208799]
[2026-03-18 08:23:41] 2026-03-18 08:22:39,814 | INFO     | zombie collector waiting for pid 208799
[2026-03-18 08:23:41] 2026-03-18 08:22:39,814 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 08:23:41] 2026-03-18 08:22:39,814 | INFO     | collected zombie processes
[2026-03-18 08:23:41] 2026-03-18 08:22:39,815 | INFO     | will attempt to kill all subprocesses of pid=208799
[2026-03-18 08:23:41] 2026-03-18 08:22:39,885 | INFO     | process IDs to be killed: [208799] (in reverse order)
[2026-03-18 08:23:41] 2026-03-18 08:22:39,916 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 08:23:41] 2026-03-18 08:22:39,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 08:23:41] 2026-03-18 08:22:39,918 | INFO     | did not find any defunct processes belonging to 208799
[2026-03-18 08:23:41] 2026-03-18 08:22:39,920 | INFO     | did not find any defunct processes belonging to 208799
[2026-03-18 08:23:41] 2026-03-18 08:22:39,920 | INFO     | ready for new job
[2026-03-18 08:23:41] 2026-03-18 08:22:39,920 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 08:23:41] 2026-03-18 08:22:39,921 | INFO     | **************************************
[2026-03-18 08:23:41] 2026-03-18 08:22:39,921 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 08:23:41] 2026-03-18 08:22:39,921 | INFO     | **************************************
[2026-03-18 08:23:41] 2026-03-18 08:22:39,921 | INFO     | 
[2026-03-18 08:23:41] 2026-03-18 08:22:39,942 | INFO     | architecture information:
[2026-03-18 08:23:41] 2026-03-18 08:22:39,942 | INFO     | executing command: cat /etc/os-release
[2026-03-18 08:23:41] 2026-03-18 08:22:39,949 | INFO     | cat /etc/os-release:
[2026-03-18 08:23:41] NAME="CentOS Linux"
[2026-03-18 08:23:41] VERSION="7 (Core)"
[2026-03-18 08:23:41] ID="centos"
[2026-03-18 08:23:41] ID_LIKE="rhel fedora"
[2026-03-18 08:23:41] VERSION_ID="7"
[2026-03-18 08:23:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 08:23:41] ANSI_COLOR="0;31"
[2026-03-18 08:23:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 08:23:41] HOME_URL="https://www.centos.org/"
[2026-03-18 08:23:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 08:23:41] 
[2026-03-18 08:23:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 08:23:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 08:23:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 08:23:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 08:23:41] 
[2026-03-18 08:23:41] 2026-03-18 08:22:39,950 | INFO     | **************************************
[2026-03-18 08:23:41] 2026-03-18 08:22:40,452 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31419/slots/0
[2026-03-18 08:23:41] 2026-03-18 08:22:40,460 | INFO     | sufficient remaining disk space (140269060096 B)
[2026-03-18 08:23:41] 2026-03-18 08:22:40,460 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 08:23:41] 2026-03-18 08:22:40,460 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 08:23:41] 2026-03-18 08:22:40,460 | INFO     | update_server=False
[2026-03-18 08:23:41] 2026-03-18 08:22:40,460 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 08:23:41] 2026-03-18 08:22:40,461 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 08:23:41] 2026-03-18 08:22:40,461 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 08:23:41] 2026-03-18 08:22:40,547 | INFO     | all payload control threads have been joined
[2026-03-18 08:23:41] 2026-03-18 08:22:40,579 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-18 08:23:41] 2026-03-18 08:22:40,579 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-18 08:23:41] 2026-03-18 08:22:40,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 08:23:41] 2026-03-18 08:22:40,580 | INFO     | will abort loop
[2026-03-18 08:23:41] 2026-03-18 08:22:41,464 | INFO     | [job] retrieve thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:41,466 | INFO     | [job] queue monitor thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:41,534 | INFO     | all data control threads have been joined
[2026-03-18 08:23:41] 2026-03-18 08:22:41,552 | INFO     | [payload] control thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:41,585 | INFO     | [job] job monitor thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:41,585 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:41,925 | INFO     | [payload] validate_post thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:41,934 | INFO     | all job control threads have been joined
[2026-03-18 08:23:41] 2026-03-18 08:22:42,466 | INFO     | [data] copytool_out thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:42,542 | INFO     | [data] control thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:42,583 | INFO     | [data] copytool_in thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:42,778 | INFO     | [job] validate thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:42,782 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:42,826 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:42,939 | INFO     | [job] control thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:43,067 | INFO     | [payload] failed_post thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:43,602 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 08:23:41] 2026-03-18 08:22:47,614 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:22:51,117 | INFO     | job.realtimelogging is not enabled
[2026-03-18 08:23:41] 2026-03-18 08:22:52,122 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 08:23:41] 2026-03-18 08:23:10,542 | INFO     | PID=199070 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-18 08:23:41] 2026-03-18 08:23:10,542 | INFO     | .. there are 4 such processes running
[2026-03-18 08:23:41] 2026-03-18 08:23:10,543 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 08:23:41] 2026-03-18 08:23:10,543 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 08:23:41] 2026-03-18 08:23:10,543 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 08:23:41] 2026-03-18 08:23:34,702 | INFO     | [monitor] cgroup control has ended
[2026-03-18 08:23:41] 2026-03-18 08:23:35,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140235663312704)>', '<ExcThread(monitor, started 140235220436736)>']
[2026-03-18 08:23:41] 2026-03-18 08:23:36,631 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 08:23:41] 2026-03-18 08:23:36,631 | INFO     | [monitor] control thread has ended
[2026-03-18 08:23:41] 2026-03-18 08:23:40,966 | INFO     | all workflow threads have been joined
[2026-03-18 08:23:41] 2026-03-18 08:23:40,966 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 08:23:41] 2026-03-18 08:23:40,966 | INFO     | traces error code: 0
[2026-03-18 08:23:41] 2026-03-18 08:23:40,966 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 08:23:41] 2026-03-18 08:23:41,018 [wrapper] ==== pilot stdout END ====
[2026-03-18 08:23:41] 2026-03-18 08:23:41,020 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 08:23:41] 2026-03-18 08:23:41,021 [wrapper] pilotpid: 199070
[2026-03-18 08:23:41] 2026-03-18 08:23:41,022 [wrapper] Pilot exit status: 0
[2026-03-18 08:23:41] 2026-03-18 08:23:41,029 [wrapper] pandaids: 7056140280
[2026-03-18 08:23:41] 2026-03-18 08:23:41,045 [wrapper] cleanup supervisor_pilot  229000 199071
[2026-03-18 08:23:41] 2026-03-18 08:23:41,046 [wrapper] Test setup, not cleaning
[2026-03-18 08:23:41] 2026-03-18 08:23:41,048 [wrapper] apfmon messages muted
[2026-03-18 08:23:41] 2026-03-18 08:23:41,049 [wrapper] ==== wrapper stdout END ====
[2026-03-18 08:23:41] 2026-03-18 08:23:41,051 [wrapper] ==== wrapper stderr END ====
[2026-03-18 08:23:41]  *** Error codes and diagnostics ***
[2026-03-18 08:23:41]     "exeErrorCode": 0,
[2026-03-18 08:23:41]     "exeErrorDiag": "",
[2026-03-18 08:23:41]     "pilotErrorCode": 0,
[2026-03-18 08:23:41]     "pilotErrorDiag": "",
[2026-03-18 08:23:41]  *** Listing of results directory ***
[2026-03-18 08:23:41] total 623452
[2026-03-18 08:23:41] -rw-r--r-- 1 boinc boinc      5111 M&#195;&#164;r 15 19:36 queuedata.json
[2026-03-18 08:23:41] -rw-r--r-- 1 boinc boinc    585013 M&#195;&#164;r 15 19:36 pilot3.tar.gz
[2026-03-18 08:23:41] -rwx------ 1 boinc boinc     36322 M&#195;&#164;r 15 19:37 runpilot2-wrapper.sh
[2026-03-18 08:23:41] -rw-rw-r-- 1 boinc boinc       100 M&#195;&#164;r 18 06:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 08:23:41] -rwxr-xr-x 1 boinc boinc      7986 M&#195;&#164;r 18 06:45 run_atlas
[2026-03-18 08:23:41] -rw-rw-r-- 1 boinc boinc       105 M&#195;&#164;r 18 06:45 job.xml
[2026-03-18 08:23:41] -rw-r--r-- 2 boinc boinc     15845 M&#195;&#164;r 18 06:45 start_atlas.sh
[2026-03-18 08:23:41] drwxrwx--x 2 boinc boinc      4096 M&#195;&#164;r 18 06:45 shared
[2026-03-18 08:23:41] -rw-r--r-- 2 boinc boinc    597537 M&#195;&#164;r 18 06:45 input.tar.gz
[2026-03-18 08:23:41] -rw-rw-r-- 1 boinc boinc      6459 M&#195;&#164;r 18 06:45 init_data.xml
[2026-03-18 08:23:41] -rw-r--r-- 2 boinc boinc 446018894 M&#195;&#164;r 18 06:45 EVNT.46701403._001939.pool.root.1
[2026-03-18 08:23:41] -rw-rw-r-- 1 boinc boinc         0 M&#195;&#164;r 18 06:45 boinc_setup_complete
[2026-03-18 08:23:41] -rw-rw-r-- 1 boinc boinc         0 M&#195;&#164;r 18 06:45 boinc_lockfile
[2026-03-18 08:23:41] -rw-rw-r-- 1 boinc boinc      2561 M&#195;&#164;r 18 06:45 pandaJob.out
[2026-03-18 08:23:41] -rw------- 1 boinc boinc   1011507 M&#195;&#164;r 18 06:46 agis_schedconf.cvmfs.json
[2026-03-18 08:23:41] -rw------- 1 boinc boinc   1511579 M&#195;&#164;r 18 06:46 agis_ddmendpoints.agis.ALL.json
[2026-03-18 08:23:41] -rw------- 1 boinc boinc       414 M&#195;&#164;r 18 06:47 workernode_map.json
[2026-03-18 08:23:41] drwx------ 5 boinc boinc      4096 M&#195;&#164;r 18 06:47 pilot3
[2026-03-18 08:23:41] -rw------- 1 boinc boinc 185949747 M&#195;&#164;r 18 08:22 HITS.48955010._052647.pool.root.1
[2026-03-18 08:23:41] -rw------- 1 boinc boinc      1017 M&#195;&#164;r 18 08:22 memory_monitor_summary.json
[2026-03-18 08:23:41] -rw------- 1 boinc boinc    401127 M&#195;&#164;r 18 08:22 log.48955010._052647.job.log.tgz.1
[2026-03-18 08:23:41] -rw------- 1 boinc boinc      6275 M&#195;&#164;r 18 08:22 heartbeat.json
[2026-03-18 08:23:41] -rw-rw-r-- 1 boinc boinc       531 M&#195;&#164;r 18 08:22 boinc_task_state.xml
[2026-03-18 08:23:41] -rw------- 1 boinc boinc        95 M&#195;&#164;r 18 08:23 pilot_heartbeat.json
[2026-03-18 08:23:41] -rw-rw-r-- 1 boinc boinc        27 M&#195;&#164;r 18 08:23 wrapper_checkpoint.txt
[2026-03-18 08:23:41] -rw-rw-r-- 1 boinc boinc      8192 M&#195;&#164;r 18 08:23 boinc_mmap_file
[2026-03-18 08:23:41] -rw------- 1 boinc boinc      5100 M&#195;&#164;r 18 08:23 pilotlog.txt
[2026-03-18 08:23:41] -rw------- 1 boinc boinc    853137 M&#195;&#164;r 18 08:23 log.48955010._052647.job.log.1
[2026-03-18 08:23:41] -rw------- 1 boinc boinc       357 M&#195;&#164;r 18 08:23 output.list
[2026-03-18 08:23:41] -rw-rw-r-- 1 boinc boinc       620 M&#195;&#164;r 18 08:23 runtime_log
[2026-03-18 08:23:41] -rw------- 1 boinc boinc   1269760 M&#195;&#164;r 18 08:23 result.tar.gz
[2026-03-18 08:23:41] -rw-rw-r-- 1 boinc boinc      9156 M&#195;&#164;r 18 08:23 runtime_log.err
[2026-03-18 08:23:41] -rw------- 1 boinc boinc       648 M&#195;&#164;r 18 08:23 FgfKDmMS6L9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJWvLDmI1YuEm.diag
[2026-03-18 08:23:41] -rw-rw-r-- 1 boinc boinc     21419 M&#195;&#164;r 18 08:23 stderr.txt
[2026-03-18 08:23:41] HITS file was successfully produced:
[2026-03-18 08:23:41] -rw------- 1 boinc boinc 185949747 M&#195;&#164;r 18 08:22 shared/HITS.pool.root.1
[2026-03-18 08:23:41]  *** Contents of shared directory: ***
[2026-03-18 08:23:41] total 619008
[2026-03-18 08:23:41] -rw-r--r-- 2 boinc boinc     15845 M&#195;&#164;r 18 06:45 start_atlas.sh
[2026-03-18 08:23:41] -rw-r--r-- 2 boinc boinc    597537 M&#195;&#164;r 18 06:45 input.tar.gz
[2026-03-18 08:23:41] -rw-r--r-- 2 boinc boinc 446018894 M&#195;&#164;r 18 06:45 ATLAS.root_0
[2026-03-18 08:23:41] -rw------- 1 boinc boinc 185949747 M&#195;&#164;r 18 08:22 HITS.pool.root.1
[2026-03-18 08:23:41] -rw------- 1 boinc boinc   1269760 M&#195;&#164;r 18 08:23 result.tar.gz
08:23:42 (191432): run_atlas exited; CPU time 22328.671793
08:23:42 (191432): called boinc_finish(0)

</stderr_txt>
]]>

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