Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:48:18 (375861): wrapper (7.7.26015): starting
12:48:18 (375861): wrapper: running run_atlas (--nthreads 4)
[2026-03-16 12:48:18] Arguments: --nthreads 4
[2026-03-16 12:48:18] Threads: 4
[2026-03-16 12:48:18] Checking for CVMFS
[2026-03-16 12:48:18] No cvmfs_config command found, will try listing directly
[2026-03-16 12:48:18] CVMFS is ok
[2026-03-16 12:48:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-16 12:48:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-16 12:48:18] Further information can be found at the LHC@home message board.
[2026-03-16 12:48:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 12:48:18] Checking for apptainer binary...
[2026-03-16 12:48:18] which: no apptainer in ((null))
[2026-03-16 12:48:18] apptainer is not installed, using version from CVMFS
[2026-03-16 12:48:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 12:48:18] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot164/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-03-16 12:48:18] apptainer works
[2026-03-16 12:48:18] Set ATHENA_PROC_NUMBER=4
[2026-03-16 12:48:18] Set ATHENA_CORE_NUMBER=4
[2026-03-16 12:48:18] Starting ATLAS job with PandaID=7045391001
[2026-03-16 12:48:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot164/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-16 13:44:39]  *** The last 200 lines of the pilot log: ***
[2026-03-16 13:44:39]  filesize=229666
[2026-03-16 13:44:39]  filetype=log
[2026-03-16 13:44:39]  guid=5064667a-3571-47af-9f0c-449a08d5c4fe
[2026-03-16 13:44:39]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-16 13:44:39]  is_altstaged=None
[2026-03-16 13:44:39]  is_tar=False
[2026-03-16 13:44:39]  lfn=log.48958610._000853.job.log.tgz.1
[2026-03-16 13:44:39]  mtime=0
[2026-03-16 13:44:39]  protocol_id=None
[2026-03-16 13:44:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-16 13:44:39]  replicas=None
[2026-03-16 13:44:39]  scope=mc23_13p6TeV
[2026-03-16 13:44:39]  status=None
[2026-03-16 13:44:39]  status_code=0
[2026-03-16 13:44:39]  storage_token=
[2026-03-16 13:44:39]  surl=/var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7045391001/log.48958610._000853.job.log.tgz.1
[2026-03-16 13:44:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/a1/log.48958610._000853.job.log.tgz.1
[2026-03-16 13:44:39]  workdir=None
[2026-03-16 13:44:39] ]
[2026-03-16 13:44:39] 2026-03-16 12:43:40,425 | INFO     | transferring file log.48958610._000853.job.log.tgz.1 from /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7045391001/log.48958610._000853.job.log.tgz.1 to /var/lib/
[2026-03-16 13:44:39] 2026-03-16 12:43:40,425 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7045391001/log.48958610._000853.job.log.tgz.1 /var/lib/boinc/var/slot164/slots/0/
[2026-03-16 13:44:39] 2026-03-16 12:43:40,438 | INFO     | adding to output.list: log.48958610._000853.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/a1/log.48958610._000853.job.log.tg
[2026-03-16 13:44:39] 2026-03-16 12:43:40,438 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-16 13:44:39] 2026-03-16 12:43:40,438 | INFO     | summary of transferred files:
[2026-03-16 13:44:39] 2026-03-16 12:43:40,438 | INFO     |  -- lfn=log.48958610._000853.job.log.tgz.1, status_code=0, status=transferred
[2026-03-16 13:44:39] 2026-03-16 12:43:40,438 | INFO     | stage-out finished correctly
[2026-03-16 13:44:39] 2026-03-16 12:43:40,481 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-16 13:44:39] 2026-03-16 12:43:41,388 | INFO     | time since job start (3313s) is within the limit (349056.0s)
[2026-03-16 13:44:39] 2026-03-16 12:43:41,864 | INFO     | monitor loop #246: job 0:7045391001 is in state 'finished'
[2026-03-16 13:44:39] 2026-03-16 12:43:41,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-16 13:44:39] 2026-03-16 12:43:42,623 | INFO     | job 7045391001 has state=finished
[2026-03-16 13:44:39] 2026-03-16 12:43:42,624 | INFO     | preparing for final server update for job 7045391001 in state='finished'
[2026-03-16 13:44:39] 2026-03-16 12:43:42,624 | INFO     | reading metadata from: /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7045391001/jobReport.json
[2026-03-16 13:44:39] 2026-03-16 12:43:42,625 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot164/slots/0/workernode_map.json
[2026-03-16 13:44:39] 2026-03-16 12:43:42,625 | INFO     | this job has now completed (state=finished)
[2026-03-16 13:44:39] 2026-03-16 12:43:42,625 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-16 13:44:39] 2026-03-16 12:43:42,625 | INFO     | log transfer has been attempted: DONE
[2026-03-16 13:44:39] 2026-03-16 12:43:42,625 | INFO     | job 7045391001 has finished - writing final server update
[2026-03-16 13:44:39] 2026-03-16 12:43:42,626 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1892902/.job.ad'
[2026-03-16 13:44:39] 2026-03-16 12:43:42,626 | INFO     | total number of processed events: 400 (read)
[2026-03-16 13:44:39] 2026-03-16 12:43:42,642 | INFO     | using path: /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7045391001/memory_monitor_summary.json (trf name=prmon)
[2026-03-16 13:44:39] 2026-03-16 12:43:42,642 | INFO     | extracted standard info from prmon json
[2026-03-16 13:44:39] 2026-03-16 12:43:42,642 | INFO     | extracted standard memory fields from prmon json
[2026-03-16 13:44:39] 2026-03-16 12:43:42,642 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-16 13:44:39] 2026-03-16 12:43:42,642 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-16 13:44:39] 2026-03-16 12:43:42,642 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-16 13:44:39] 2026-03-16 12:43:42,643 | INFO     | fitting pss+swap vs Time
[2026-03-16 13:44:39] 2026-03-16 12:43:42,643 | INFO     | sum of square deviations: 32179208.0
[2026-03-16 13:44:39] 2026-03-16 12:43:42,643 | INFO     | sum of deviations: -1051168348.0
[2026-03-16 13:44:39] 2026-03-16 12:43:42,643 | INFO     | mean x: 1773663434.0
[2026-03-16 13:44:39] 2026-03-16 12:43:42,643 | INFO     | mean y: 2431824.765957447
[2026-03-16 13:44:39] 2026-03-16 12:43:42,643 | INFO     | intersect: 57941050507.54358
[2026-03-16 13:44:39] 2026-03-16 12:43:42,643 | INFO     | chi2: 0.0027519739078787383
[2026-03-16 13:44:39] 2026-03-16 12:43:42,643 | INFO     | current memory leak: -32.67 B/s (using 47 data points, chi2=0.00)
[2026-03-16 13:44:39] 2026-03-16 12:43:42,644 | INFO     | could have reported an average CPU frequency of 3752 MHz (5 samples)
[2026-03-16 13:44:39] 2026-03-16 12:43:42,644 | INFO     | ..............................
[2026-03-16 13:44:39] 2026-03-16 12:43:42,644 | INFO     | . Timing measurements:
[2026-03-16 13:44:39] 2026-03-16 12:43:42,644 | INFO     | . get job = 0 s
[2026-03-16 13:44:39] 2026-03-16 12:43:42,644 | INFO     | . initial setup = 3 s
[2026-03-16 13:44:39] 2026-03-16 12:43:42,644 | INFO     | . payload setup = 3 s
[2026-03-16 13:44:39] 2026-03-16 12:43:42,644 | INFO     | . stage-in = 0 s
[2026-03-16 13:44:39] 2026-03-16 12:43:42,644 | INFO     | . payload execution = 3293 s
[2026-03-16 13:44:39] 2026-03-16 12:43:42,644 | INFO     | . stage-out = 0 s
[2026-03-16 13:44:39] 2026-03-16 12:43:42,644 | INFO     | . log creation = 0 s
[2026-03-16 13:44:39] 2026-03-16 12:43:42,644 | INFO     | ..............................
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | 
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | job summary report
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | --------------------------------------------------
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | PanDA job id: 7045391001
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | task id: 48958610
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | errors: (none)
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | pilot state: finished 
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | transexitcode: 0
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | exeerrorcode: 0
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | exeerrordiag: 
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | exitcode: 0
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | exitmsg: OK
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | cpuconsumptiontime: 12562 s
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | nevents: 400
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | neventsw: 0
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | pid: 386547
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | pgrp: 386547
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | corecount: 4
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | event service: False
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | sizes: {0: 2280189, 11: 2280189, 3300: 2305722, 3301: 2314800, 3303: 2314970}
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | --------------------------------------------------
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | 
[2026-03-16 13:44:39] 2026-03-16 12:43:42,788 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot164/slots/0
[2026-03-16 13:44:39] 2026-03-16 12:43:42,804 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | job 7045391001 has completed (purged errors)
[2026-03-16 13:44:39] 2026-03-16 12:43:42,805 | INFO     | overall cleanup function is called
[2026-03-16 13:44:39] 2026-03-16 12:43:43,812 | INFO     | --- collectZombieJob: --- 10, [386547]
[2026-03-16 13:44:39] 2026-03-16 12:43:43,812 | INFO     | zombie collector waiting for pid 386547
[2026-03-16 13:44:39] 2026-03-16 12:43:43,812 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-16 13:44:39] 2026-03-16 12:43:43,813 | INFO     | collected zombie processes
[2026-03-16 13:44:39] 2026-03-16 12:43:43,813 | INFO     | will attempt to kill all subprocesses of pid=386547
[2026-03-16 13:44:39] 2026-03-16 12:43:44,183 | INFO     | process IDs to be killed: [386547] (in reverse order)
[2026-03-16 13:44:39] 2026-03-16 12:43:44,348 | WARNING  | found no corresponding commands to process id(s)
[2026-03-16 13:44:39] 2026-03-16 12:43:44,348 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-16 13:44:39] 2026-03-16 12:43:44,373 | INFO     | did not find any defunct processes belonging to 386547
[2026-03-16 13:44:39] 2026-03-16 12:43:44,395 | INFO     | did not find any defunct processes belonging to 386547
[2026-03-16 13:44:39] 2026-03-16 12:43:44,395 | INFO     | ready for new job
[2026-03-16 13:44:39] 2026-03-16 12:43:44,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-16 13:44:39] 2026-03-16 12:43:44,396 | INFO     | **************************************
[2026-03-16 13:44:39] 2026-03-16 12:43:44,396 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-16 13:44:39] 2026-03-16 12:43:44,396 | INFO     | **************************************
[2026-03-16 13:44:39] 2026-03-16 12:43:44,396 | INFO     | 
[2026-03-16 13:44:39] 2026-03-16 12:43:44,401 | INFO     | architecture information:
[2026-03-16 13:44:39] 2026-03-16 12:43:44,401 | INFO     | executing command: cat /etc/os-release
[2026-03-16 13:44:39] 2026-03-16 12:43:44,414 | INFO     | cat /etc/os-release:
[2026-03-16 13:44:39] NAME="CentOS Linux"
[2026-03-16 13:44:39] VERSION="7 (Core)"
[2026-03-16 13:44:39] ID="centos"
[2026-03-16 13:44:39] ID_LIKE="rhel fedora"
[2026-03-16 13:44:39] VERSION_ID="7"
[2026-03-16 13:44:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-16 13:44:39] ANSI_COLOR="0;31"
[2026-03-16 13:44:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-16 13:44:39] HOME_URL="https://www.centos.org/"
[2026-03-16 13:44:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-16 13:44:39] 
[2026-03-16 13:44:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-16 13:44:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-16 13:44:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-16 13:44:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-16 13:44:39] 
[2026-03-16 13:44:39] 2026-03-16 12:43:44,415 | INFO     | **************************************
[2026-03-16 13:44:39] 2026-03-16 12:43:44,918 | INFO     | executing command: df -mP /var/lib/boinc/var/slot164/slots/0
[2026-03-16 13:44:39] 2026-03-16 12:43:44,931 | INFO     | sufficient remaining disk space (265439674368 B)
[2026-03-16 13:44:39] 2026-03-16 12:43:44,931 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-16 13:44:39] 2026-03-16 12:43:44,931 | INFO     | current server update state: UPDATING_FINAL
[2026-03-16 13:44:39] 2026-03-16 12:43:44,931 | INFO     | update_server=False
[2026-03-16 13:44:39] 2026-03-16 12:43:44,931 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-16 13:44:39] 2026-03-16 12:43:45,320 | INFO     | all data control threads have been joined
[2026-03-16 13:44:39] 2026-03-16 12:43:45,372 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-16 13:44:39] 2026-03-16 12:43:45,373 | INFO     | aborting loop
[2026-03-16 13:44:39] 2026-03-16 12:43:45,936 | INFO     | [job] retrieve thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:45,990 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-16 13:44:39] 2026-03-16 12:43:46,044 | INFO     | [payload] execute_payloads thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:46,252 | INFO     | all job control threads have been joined
[2026-03-16 13:44:39] 2026-03-16 12:43:46,316 | INFO     | all payload control threads have been joined
[2026-03-16 13:44:39] 2026-03-16 12:43:46,325 | INFO     | [data] control thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:46,378 | INFO     | [job] job monitor thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:46,387 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:46,486 | INFO     | [payload] validate_post thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:46,525 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-16 13:44:39] 2026-03-16 12:43:46,874 | INFO     | [job] validate thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:46,927 | INFO     | [job] create_data_payload thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:46,946 | INFO     | [payload] validate_pre thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:46,966 | INFO     | [payload] failed_post thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:47,089 | INFO     | [data] copytool_in thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:47,258 | INFO     | [job] control thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:47,321 | INFO     | [payload] control thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:47,698 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-16 13:44:39] 2026-03-16 12:43:47,995 | INFO     | [data] copytool_out thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:48,703 | INFO     | [job] queue monitor thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:43:50,527 | INFO     | [data] queue_monitor thread has finished
[2026-03-16 13:44:39] 2026-03-16 12:44:14,815 | INFO     | PID=380737 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-16 13:44:39] 2026-03-16 12:44:14,815 | INFO     | .. there are 20 such processes running
[2026-03-16 13:44:39] 2026-03-16 12:44:14,816 | INFO     | found 0 job(s) in 20 queues
[2026-03-16 13:44:39] 2026-03-16 12:44:14,816 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-16 13:44:39] 2026-03-16 12:44:14,816 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-16 13:44:39] 2026-03-16 12:44:31,890 | INFO     | [monitor] cgroup control has ended
[2026-03-16 13:44:39] 2026-03-16 12:44:33,812 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23071445485376)>', '<ExcThread(monitor, started 23071196178176)>']
[2026-03-16 13:44:39] 2026-03-16 12:44:33,911 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-16 13:44:39] 2026-03-16 12:44:33,911 | INFO     | [monitor] control thread has ended
[2026-03-16 13:44:39] 2026-03-16 12:44:38,824 | INFO     | all workflow threads have been joined
[2026-03-16 13:44:39] 2026-03-16 12:44:38,824 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-16 13:44:39] 2026-03-16 12:44:38,825 | INFO     | traces error code: 0
[2026-03-16 13:44:39] 2026-03-16 12:44:38,825 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-16 13:44:39] 2026-03-16 12:44:38,921 [wrapper] ==== pilot stdout END ====
[2026-03-16 13:44:39] 2026-03-16 12:44:38,924 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-16 13:44:39] 2026-03-16 12:44:38,926 [wrapper] pilotpid: 380737
[2026-03-16 13:44:39] 2026-03-16 12:44:38,928 [wrapper] Pilot exit status: 0
[2026-03-16 13:44:39] 2026-03-16 12:44:38,935 [wrapper] pandaids: 7045391001
[2026-03-16 13:44:39] 2026-03-16 12:44:39,043 [wrapper] cleanup supervisor_pilot  539218 380738
[2026-03-16 13:44:39] 2026-03-16 12:44:39,045 [wrapper] Test setup, not cleaning
[2026-03-16 13:44:39] 2026-03-16 12:44:39,047 [wrapper] apfmon messages muted
[2026-03-16 13:44:39] 2026-03-16 12:44:39,050 [wrapper] ==== wrapper stdout END ====
[2026-03-16 13:44:39] 2026-03-16 12:44:39,052 [wrapper] ==== wrapper stderr END ====
[2026-03-16 13:44:39]  *** Error codes and diagnostics ***
[2026-03-16 13:44:39]     "exeErrorCode": 0,
[2026-03-16 13:44:39]     "exeErrorDiag": "",
[2026-03-16 13:44:39]     "pilotErrorCode": 0,
[2026-03-16 13:44:39]     "pilotErrorDiag": "",
[2026-03-16 13:44:39]  *** Listing of results directory ***
[2026-03-16 13:44:39] total 425552
[2026-03-16 13:44:39] -rw-r--r--. 1 boinc boinc      5111 Mar  7 19:53 queuedata.json
[2026-03-16 13:44:39] -rw-r--r--. 1 boinc boinc    584627 Mar  7 19:53 pilot3.tar.gz
[2026-03-16 13:44:39] -rwx------. 1 boinc boinc     36322 Mar  7 19:53 runpilot2-wrapper.sh
[2026-03-16 13:44:39] -rw-r--r--. 1 boinc boinc       100 Mar 16 12:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-16 13:44:39] -rwxr-xr-x. 1 boinc boinc      7986 Mar 16 12:48 run_atlas
[2026-03-16 13:44:39] -rw-r--r--. 1 boinc boinc       105 Mar 16 12:48 job.xml
[2026-03-16 13:44:39] -rw-r--r--. 1 boinc boinc      6710 Mar 16 12:48 init_data.xml
[2026-03-16 13:44:39] -rw-r--r--. 2 boinc boinc 260300662 Mar 16 12:48 EVNT.48958608._000035.pool.root.1
[2026-03-16 13:44:39] -rw-r--r--. 2 boinc boinc     15845 Mar 16 12:48 start_atlas.sh
[2026-03-16 13:44:39] drwxrwx--x. 2 boinc boinc      4096 Mar 16 12:48 shared
[2026-03-16 13:44:39] -rw-r--r--. 2 boinc boinc    597928 Mar 16 12:48 input.tar.gz
[2026-03-16 13:44:39] -rw-r--r--. 1 boinc boinc         0 Mar 16 12:48 boinc_lockfile
[2026-03-16 13:44:39] -rw-r--r--. 1 boinc boinc      2522 Mar 16 12:48 pandaJob.out
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc   1006429 Mar 16 12:48 agis_schedconf.cvmfs.json
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc   1511579 Mar 16 12:48 agis_ddmendpoints.agis.ALL.json
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc       445 Mar 16 12:48 workernode_map.json
[2026-03-16 13:44:39] drwx------. 5 boinc boinc      4096 Mar 16 12:48 pilot3
[2026-03-16 13:44:39] -rw-r--r--. 1 boinc boinc       529 Mar 16 13:43 boinc_task_state.xml
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc 170053074 Mar 16 13:43 HITS.48958610._000853.pool.root.1
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc      1024 Mar 16 13:43 memory_monitor_summary.json
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc    229666 Mar 16 13:43 log.48958610._000853.job.log.tgz.1
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc        95 Mar 16 13:43 pilot_heartbeat.json
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc      6337 Mar 16 13:43 heartbeat.json
[2026-03-16 13:44:39] -rw-r--r--. 1 boinc boinc      8192 Mar 16 13:44 boinc_mmap_file
[2026-03-16 13:44:39] -rw-r--r--. 1 boinc boinc        27 Mar 16 13:44 wrapper_checkpoint.txt
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc      4830 Mar 16 13:44 pilotlog.txt
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc    505815 Mar 16 13:44 log.48958610._000853.job.log.1
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc       357 Mar 16 13:44 output.list
[2026-03-16 13:44:39] -rw-r--r--. 1 boinc boinc       620 Mar 16 13:44 runtime_log
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc    757760 Mar 16 13:44 result.tar.gz
[2026-03-16 13:44:39] -rw-r--r--. 1 boinc boinc      9221 Mar 16 13:44 runtime_log.err
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc       659 Mar 16 13:44 p86MDm5wBJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDm5RULDmaCVBom.diag
[2026-03-16 13:44:39] -rw-r--r--. 1 boinc boinc     21069 Mar 16 13:44 stderr.txt
[2026-03-16 13:44:39] HITS file was successfully produced:
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc 170053074 Mar 16 13:43 shared/HITS.pool.root.1
[2026-03-16 13:44:39]  *** Contents of shared directory: ***
[2026-03-16 13:44:39] total 421616
[2026-03-16 13:44:39] -rw-r--r--. 2 boinc boinc 260300662 Mar 16 12:48 ATLAS.root_0
[2026-03-16 13:44:39] -rw-r--r--. 2 boinc boinc     15845 Mar 16 12:48 start_atlas.sh
[2026-03-16 13:44:39] -rw-r--r--. 2 boinc boinc    597928 Mar 16 12:48 input.tar.gz
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc 170053074 Mar 16 13:43 HITS.pool.root.1
[2026-03-16 13:44:39] -rw-------. 1 boinc boinc    757760 Mar 16 13:44 result.tar.gz
13:44:40 (375861): run_atlas exited; CPU time 12680.262923
13:44:40 (375861): called boinc_finish(0)

</stderr_txt>
]]>

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