Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:55:26 (666129): wrapper (7.7.26015): starting
18:55:26 (666129): wrapper: running run_atlas (--nthreads 8)
[2026-03-15 18:55:26] Arguments: --nthreads 8
[2026-03-15 18:55:26] Threads: 8
[2026-03-15 18:55:26] Checking for CVMFS
[2026-03-15 18:55:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 18:55:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 18:55:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 18:55:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 18:55:26] 2.13.3.0 8454 116751 281216 157330 0 477 35310053 39288832 1454 16776704 0 56803573 99.646 65276097 32768 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-15 18:55:26] CVMFS is ok
[2026-03-15 18:55:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 18:55:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 18:55:26] Further information can be found at the LHC@home message board.
[2026-03-15 18:55:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 18:55:26] Checking for apptainer binary...
[2026-03-15 18:55:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 18:55:26] Running /usr/bin/apptainer --version
[2026-03-15 18:55:26] apptainer version 1.4.5-2.el9
[2026-03-15 18:55:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 18:55:26] c-211-31.aglt2.org
[2026-03-15 18:55:26] apptainer works
[2026-03-15 18:55:26] Set ATHENA_PROC_NUMBER=8
[2026-03-15 18:55:26] Set ATHENA_CORE_NUMBER=8
[2026-03-15 18:55:26] Starting ATLAS job with PandaID=7045391672
[2026-03-15 18:55:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:02:21 (708742): wrapper (7.7.26015): starting
19:02:21 (708742): wrapper: running run_atlas (--nthreads 8)
[2026-03-15 19:02:21] Arguments: --nthreads 8
[2026-03-15 19:02:21] Threads: 8
[2026-03-15 19:02:21] This job has been restarted, cleaning up previous attempt
[2026-03-15 19:02:21] Checking for CVMFS
[2026-03-15 19:02:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 19:02:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 19:02:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 19:02:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 19:02:22] 2.13.3.0 8454 116758 278932 157330 1 481 35310069 39288832 45 16776704 0 56895301 99.646 65276100 32768 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-15 19:02:22] CVMFS is ok
[2026-03-15 19:02:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 19:02:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 19:02:22] Further information can be found at the LHC@home message board.
[2026-03-15 19:02:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 19:02:22] Checking for apptainer binary...
[2026-03-15 19:02:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 19:02:22] Running /usr/bin/apptainer --version
[2026-03-15 19:02:22] apptainer version 1.4.5-2.el9
[2026-03-15 19:02:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 19:02:22] c-211-31.aglt2.org
[2026-03-15 19:02:22] apptainer works
[2026-03-15 19:02:22] Set ATHENA_PROC_NUMBER=8
[2026-03-15 19:02:22] Set ATHENA_CORE_NUMBER=8
[2026-03-15 19:02:22] Starting ATLAS job with PandaID=7045391672
[2026-03-15 19:02:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 21:10:47]  *** The last 200 lines of the pilot log: ***
[2026-03-15 21:10:47] 2026-03-16 01:10:09,805 | INFO     | total number of processed events: 400 (read)
[2026-03-15 21:10:47] 2026-03-16 01:10:09,809 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7045391672/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 21:10:47] 2026-03-16 01:10:09,810 | INFO     | extracted standard info from prmon json
[2026-03-15 21:10:47] 2026-03-16 01:10:09,810 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 21:10:47] 2026-03-16 01:10:09,810 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 21:10:47] 2026-03-16 01:10:09,810 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 21:10:47] 2026-03-16 01:10:09,810 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 21:10:47] 2026-03-16 01:10:09,812 | INFO     | fitting pss+swap vs Time
[2026-03-15 21:10:47] 2026-03-16 01:10:09,813 | INFO     | sum of square deviations: 620244187.5
[2026-03-15 21:10:47] 2026-03-16 01:10:09,813 | INFO     | sum of deviations: 8272003210.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,813 | INFO     | mean x: 1773619580.5
[2026-03-15 21:10:47] 2026-03-16 01:10:09,813 | INFO     | mean y: 2491013.111111111
[2026-03-15 21:10:47] 2026-03-16 01:10:09,813 | INFO     | intersect: -23651719955.556538
[2026-03-15 21:10:47] 2026-03-16 01:10:09,814 | INFO     | chi2: 1.8471063189098627
[2026-03-15 21:10:47] 2026-03-16 01:10:09,814 | INFO     | sum of square deviations: 549294020.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,814 | INFO     | sum of deviations: 15511042180.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,814 | INFO     | mean x: 1773619428.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,814 | INFO     | mean y: 2506026.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,814 | INFO     | intersect: -50081210084.68235
[2026-03-15 21:10:47] 2026-03-16 01:10:09,815 | INFO     | chi2: 1.1632539730367837
[2026-03-15 21:10:47] 2026-03-16 01:10:09,815 | INFO     | current chi2=1.1632539730367837 (change=37.02290111143572 %)
[2026-03-15 21:10:47] 2026-03-16 01:10:09,815 | INFO     | sum of square deviations: 483971865.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,815 | INFO     | sum of deviations: 14785678888.5
[2026-03-15 21:10:47] 2026-03-16 01:10:09,815 | INFO     | mean x: 1773619275.5
[2026-03-15 21:10:47] 2026-03-16 01:10:09,816 | INFO     | mean y: 2504331.6120689656
[2026-03-15 21:10:47] 2026-03-16 01:10:09,816 | INFO     | intersect: -54182804721.41938
[2026-03-15 21:10:47] 2026-03-16 01:10:09,816 | INFO     | chi2: 1.164545253226482
[2026-03-15 21:10:47] 2026-03-16 01:10:09,816 | INFO     | current chi2=1.164545253226482 (change=-0.11100586970936835 %)
[2026-03-15 21:10:47] 2026-03-16 01:10:09,816 | INFO     | right removable region: 115
[2026-03-15 21:10:47] 2026-03-16 01:10:09,816 | INFO     | sum of square deviations: 549294020.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,817 | INFO     | sum of deviations: -6641224635.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,817 | INFO     | mean x: 1773619733.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,817 | INFO     | mean y: 2522361.520661157
[2026-03-15 21:10:47] 2026-03-16 01:10:09,817 | INFO     | intersect: 21446424233.82162
[2026-03-15 21:10:47] 2026-03-16 01:10:09,817 | INFO     | chi2: 0.7096027581975014
[2026-03-15 21:10:47] 2026-03-16 01:10:09,817 | INFO     | current chi2=0.7096027581975014 (change=61.58300413284821 %)
[2026-03-15 21:10:47] 2026-03-16 01:10:09,818 | INFO     | sum of square deviations: 483971865.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,818 | INFO     | sum of deviations: -5470100763.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,818 | INFO     | mean x: 1773619885.5
[2026-03-15 21:10:47] 2026-03-16 01:10:09,818 | INFO     | mean y: 2519612.293103448
[2026-03-15 21:10:47] 2026-03-16 01:10:09,818 | INFO     | intersect: 20048890466.81689
[2026-03-15 21:10:47] 2026-03-16 01:10:09,818 | INFO     | chi2: 0.708049529784214
[2026-03-15 21:10:47] 2026-03-16 01:10:09,819 | INFO     | current chi2=0.708049529784214 (change=0.21888703156014466 %)
[2026-03-15 21:10:47] 2026-03-16 01:10:09,819 | INFO     | left removable region: 20
[2026-03-15 21:10:47] 2026-03-16 01:10:09,819 | INFO     | sum of square deviations: 265828240.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,819 | INFO     | sum of deviations: 737637620.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,819 | INFO     | mean x: 1773619855.0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,819 | INFO     | mean y: 2539468.3157894737
[2026-03-15 21:10:47] 2026-03-16 01:10:09,819 | INFO     | intersect: -4919017130.136449
[2026-03-15 21:10:47] 2026-03-16 01:10:09,820 | INFO     | chi2: 0.00017773541299106663
[2026-03-15 21:10:47] 2026-03-16 01:10:09,820 | INFO     | current memory leak: 2.77 B/s (using 95 data points, chi2=0.00)
[2026-03-15 21:10:47] 2026-03-16 01:10:09,820 | INFO     | could have reported an average CPU frequency of 2952 MHz (8 samples)
[2026-03-15 21:10:47] 2026-03-16 01:10:09,820 | INFO     | ..............................
[2026-03-15 21:10:47] 2026-03-16 01:10:09,820 | INFO     | . Timing measurements:
[2026-03-15 21:10:47] 2026-03-16 01:10:09,820 | INFO     | . get job = 0 s
[2026-03-15 21:10:47] 2026-03-16 01:10:09,820 | INFO     | . initial setup = 0 s
[2026-03-15 21:10:47] 2026-03-16 01:10:09,820 | INFO     | . payload setup = 4 s
[2026-03-15 21:10:47] 2026-03-16 01:10:09,821 | INFO     | . stage-in = 0 s
[2026-03-15 21:10:47] 2026-03-16 01:10:09,821 | INFO     | . payload execution = 7635 s
[2026-03-15 21:10:47] 2026-03-16 01:10:09,821 | INFO     | . stage-out = 0 s
[2026-03-15 21:10:47] 2026-03-16 01:10:09,821 | INFO     | . log creation = 0 s
[2026-03-15 21:10:47] 2026-03-16 01:10:09,821 | INFO     | ..............................
[2026-03-15 21:10:47] 2026-03-16 01:10:09,881 | INFO     | 
[2026-03-15 21:10:47] 2026-03-16 01:10:09,881 | INFO     | job summary report
[2026-03-15 21:10:47] 2026-03-16 01:10:09,881 | INFO     | --------------------------------------------------
[2026-03-15 21:10:47] 2026-03-16 01:10:09,881 | INFO     | PanDA job id: 7045391672
[2026-03-15 21:10:47] 2026-03-16 01:10:09,881 | INFO     | task id: 48958610
[2026-03-15 21:10:47] 2026-03-16 01:10:09,881 | INFO     | errors: (none)
[2026-03-15 21:10:47] 2026-03-16 01:10:09,882 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 21:10:47] 2026-03-16 01:10:09,882 | INFO     | pilot state: finished 
[2026-03-15 21:10:47] 2026-03-16 01:10:09,882 | INFO     | transexitcode: 0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,882 | INFO     | exeerrorcode: 0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,882 | INFO     | exeerrordiag: 
[2026-03-15 21:10:47] 2026-03-16 01:10:09,882 | INFO     | exitcode: 0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,882 | INFO     | exitmsg: OK
[2026-03-15 21:10:47] 2026-03-16 01:10:09,882 | INFO     | cpuconsumptiontime: 58638 s
[2026-03-15 21:10:47] 2026-03-16 01:10:09,882 | INFO     | nevents: 400
[2026-03-15 21:10:47] 2026-03-16 01:10:09,882 | INFO     | neventsw: 0
[2026-03-15 21:10:47] 2026-03-16 01:10:09,882 | INFO     | pid: 733347
[2026-03-15 21:10:47] 2026-03-16 01:10:09,883 | INFO     | pgrp: 733347
[2026-03-15 21:10:47] 2026-03-16 01:10:09,883 | INFO     | corecount: 8
[2026-03-15 21:10:47] 2026-03-16 01:10:09,883 | INFO     | event service: False
[2026-03-15 21:10:47] 2026-03-16 01:10:09,883 | INFO     | sizes: {0: 2280183, 11: 2280183, 7643: 2307830, 7644: 2316828, 7646: 2316884, 7649: 2317078}
[2026-03-15 21:10:47] 2026-03-16 01:10:09,883 | INFO     | --------------------------------------------------
[2026-03-15 21:10:47] 2026-03-16 01:10:09,883 | INFO     | 
[2026-03-15 21:10:47] 2026-03-16 01:10:09,883 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-03-15 21:10:47] 2026-03-16 01:10:09,897 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,897 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,897 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,897 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,898 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,898 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,898 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,898 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,898 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,898 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,898 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,898 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,898 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,898 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,899 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,899 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,899 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,899 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 21:10:47] 2026-03-16 01:10:09,899 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,899 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 21:10:47] 2026-03-16 01:10:09,899 | INFO     | job 7045391672 has completed (purged errors)
[2026-03-15 21:10:47] 2026-03-16 01:10:09,899 | INFO     | overall cleanup function is called
[2026-03-15 21:10:47] 2026-03-16 01:10:10,907 | INFO     | --- collectZombieJob: --- 10, [733347]
[2026-03-15 21:10:47] 2026-03-16 01:10:10,907 | INFO     | zombie collector waiting for pid 733347
[2026-03-15 21:10:47] 2026-03-16 01:10:10,907 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 21:10:47] 2026-03-16 01:10:10,908 | INFO     | collected zombie processes
[2026-03-15 21:10:47] 2026-03-16 01:10:10,908 | INFO     | will attempt to kill all subprocesses of pid=733347
[2026-03-15 21:10:47] 2026-03-16 01:10:11,056 | INFO     | process IDs to be killed: [733347] (in reverse order)
[2026-03-15 21:10:47] 2026-03-16 01:10:11,096 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 21:10:47] 2026-03-16 01:10:11,097 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 21:10:47] 2026-03-16 01:10:11,101 | INFO     | did not find any defunct processes belonging to 733347
[2026-03-15 21:10:47] 2026-03-16 01:10:11,105 | INFO     | did not find any defunct processes belonging to 733347
[2026-03-15 21:10:47] 2026-03-16 01:10:11,105 | INFO     | ready for new job
[2026-03-15 21:10:47] 2026-03-16 01:10:11,105 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 21:10:47] 2026-03-16 01:10:11,107 | INFO     | **************************************
[2026-03-15 21:10:47] 2026-03-16 01:10:11,107 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-15 21:10:47] 2026-03-16 01:10:11,107 | INFO     | **************************************
[2026-03-15 21:10:47] 2026-03-16 01:10:11,107 | INFO     | 
[2026-03-15 21:10:47] 2026-03-16 01:10:11,108 | INFO     | architecture information:
[2026-03-15 21:10:47] 2026-03-16 01:10:11,109 | INFO     | executing command: cat /etc/os-release
[2026-03-15 21:10:47] 2026-03-16 01:10:11,118 | INFO     | cat /etc/os-release:
[2026-03-15 21:10:47] NAME="CentOS Linux"
[2026-03-15 21:10:47] VERSION="7 (Core)"
[2026-03-15 21:10:47] ID="centos"
[2026-03-15 21:10:47] ID_LIKE="rhel fedora"
[2026-03-15 21:10:47] VERSION_ID="7"
[2026-03-15 21:10:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 21:10:47] ANSI_COLOR="0;31"
[2026-03-15 21:10:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 21:10:47] HOME_URL="https://www.centos.org/"
[2026-03-15 21:10:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 21:10:47] 
[2026-03-15 21:10:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 21:10:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 21:10:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 21:10:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 21:10:47] 
[2026-03-15 21:10:47] 2026-03-16 01:10:11,118 | INFO     | **************************************
[2026-03-15 21:10:47] 2026-03-16 01:10:11,621 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-15 21:10:47] 2026-03-16 01:10:11,632 | INFO     | sufficient remaining disk space (52657389568 B)
[2026-03-15 21:10:47] 2026-03-16 01:10:11,632 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 21:10:47] 2026-03-16 01:10:11,633 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 21:10:47] 2026-03-16 01:10:11,633 | INFO     | update_server=False
[2026-03-15 21:10:47] 2026-03-16 01:10:11,633 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 21:10:47] 2026-03-16 01:10:11,633 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 21:10:47] 2026-03-16 01:10:11,633 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 21:10:47] 2026-03-16 01:10:11,794 | INFO     | all payload control threads have been joined
[2026-03-15 21:10:47] 2026-03-16 01:10:12,135 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-15 21:10:47] 2026-03-16 01:10:12,135 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-15 21:10:47] 2026-03-16 01:10:12,135 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 21:10:47] 2026-03-16 01:10:12,136 | INFO     | will abort loop
[2026-03-15 21:10:47] 2026-03-16 01:10:12,139 | INFO     | all data control threads have been joined
[2026-03-15 21:10:47] 2026-03-16 01:10:12,638 | INFO     | [job] retrieve thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:12,639 | INFO     | [job] queue monitor thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:12,786 | INFO     | [payload] failed_post thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:12,799 | INFO     | [payload] control thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:12,826 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 21:10:47] 2026-03-16 01:10:13,003 | INFO     | all job control threads have been joined
[2026-03-15 21:10:47] 2026-03-16 01:10:13,141 | INFO     | [job] job monitor thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:13,144 | INFO     | [data] control thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:13,293 | INFO     | [payload] validate_post thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:13,506 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:13,536 | INFO     | [job] validate thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:13,639 | INFO     | [data] copytool_out thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:13,761 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:13,920 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:14,008 | INFO     | [job] control thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:14,046 | INFO     | [data] copytool_in thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:16,832 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:22,667 | INFO     | job.realtimelogging is not enabled
[2026-03-15 21:10:47] 2026-03-16 01:10:23,673 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 21:10:47] 2026-03-16 01:10:41,131 | INFO     | [monitor] cgroup control has ended
[2026-03-15 21:10:47] 2026-03-16 01:10:42,031 | INFO     | PID=723668 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 21:10:47] 2026-03-16 01:10:42,031 | INFO     | .. there are 2 such processes running
[2026-03-15 21:10:47] 2026-03-16 01:10:42,031 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 21:10:47] 2026-03-16 01:10:42,031 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 21:10:47] 2026-03-16 01:10:42,032 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 21:10:47] 2026-03-16 01:10:42,576 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140291922556736)>', '<ExcThread(monitor, started 140291474450176)>']
[2026-03-15 21:10:47] 2026-03-16 01:10:43,037 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 21:10:47] 2026-03-16 01:10:43,037 | INFO     | [monitor] control thread has ended
[2026-03-15 21:10:47] 2026-03-16 01:10:47,601 | INFO     | all workflow threads have been joined
[2026-03-15 21:10:47] 2026-03-16 01:10:47,602 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 21:10:47] 2026-03-16 01:10:47,602 | INFO     | traces error code: 0
[2026-03-15 21:10:47] 2026-03-16 01:10:47,602 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 21:10:47] 2026-03-16 01:10:47,675 [wrapper] ==== pilot stdout END ====
[2026-03-15 21:10:47] 2026-03-16 01:10:47,677 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 21:10:47] 2026-03-16 01:10:47,680 [wrapper] pilotpid: 723668
[2026-03-15 21:10:47] 2026-03-16 01:10:47,682 [wrapper] Pilot exit status: 0
[2026-03-15 21:10:47] 2026-03-16 01:10:47,689 [wrapper] pandaids: 7045391672 7045391672
[2026-03-15 21:10:47] 2026-03-16 01:10:47,719 [wrapper] cleanup supervisor_pilot  881452 723670
[2026-03-15 21:10:47] 2026-03-16 01:10:47,722 [wrapper] Test setup, not cleaning
[2026-03-15 21:10:47] 2026-03-16 01:10:47,724 [wrapper] apfmon messages muted
[2026-03-15 21:10:47] 2026-03-16 01:10:47,727 [wrapper] ==== wrapper stdout END ====
[2026-03-15 21:10:47] 2026-03-16 01:10:47,729 [wrapper] ==== wrapper stderr END ====
[2026-03-15 21:10:47]  *** Error codes and diagnostics ***
[2026-03-15 21:10:47]     "exeErrorCode": 0,
[2026-03-15 21:10:47]     "exeErrorDiag": "",
[2026-03-15 21:10:47]     "pilotErrorCode": 0,
[2026-03-15 21:10:47]     "pilotErrorDiag": "",
[2026-03-15 21:10:47]  *** Listing of results directory ***
[2026-03-15 21:10:47] total 694196
[2026-03-15 21:10:47] drwx------. 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-03-15 21:10:47] -rw-r--r--. 1 boincer umatlas      5111 Mar  7 13:53 queuedata.json
[2026-03-15 21:10:47] -rw-r--r--. 1 boincer umatlas    584627 Mar  7 13:53 pilot3.tar.gz
[2026-03-15 21:10:47] -rwx------. 1 boincer umatlas     36322 Mar  7 13:53 runpilot2-wrapper.sh
[2026-03-15 21:10:47] -rw-r--r--. 1 boincer umatlas       100 Mar 15 18:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 21:10:47] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 15 18:55 run_atlas
[2026-03-15 21:10:47] -rw-r--r--. 1 boincer umatlas       105 Mar 15 18:55 job.xml
[2026-03-15 21:10:47] -rw-r--r--. 3 boincer umatlas 261340159 Mar 15 18:55 EVNT.48958608._000039.pool.root.1
[2026-03-15 21:10:47] -rw-r--r--. 3 boincer umatlas 261340159 Mar 15 18:55 ATLAS.root_0
[2026-03-15 21:10:47] -rw-r--r--. 2 boincer umatlas     15845 Mar 15 18:55 start_atlas.sh
[2026-03-15 21:10:47] drwxrwx--x. 2 boincer umatlas      4096 Mar 15 18:55 shared
[2026-03-15 21:10:47] -rw-r--r--. 2 boincer umatlas    597937 Mar 15 18:55 input.tar.gz
[2026-03-15 21:10:47] -rw-r--r--. 1 boincer umatlas         0 Mar 15 18:55 boinc_lockfile
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas   1511579 Mar 15 18:55 agis_ddmendpoints.agis.ALL.json
[2026-03-15 21:10:47] -rw-r--r--. 1 boincer umatlas      2525 Mar 15 19:02 pandaJob.out
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas        57 Mar 15 19:02 setup.sh.local
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas   1006471 Mar 15 19:02 agis_schedconf.cvmfs.json
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas       442 Mar 15 19:02 workernode_map.json
[2026-03-15 21:10:47] -rw-r--r--. 1 boincer umatlas      6524 Mar 15 21:01 init_data.xml
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas 181252933 Mar 15 21:09 HITS.48958610._000976.pool.root.1
[2026-03-15 21:10:47] -rw-r--r--. 1 boincer umatlas       529 Mar 15 21:09 boinc_task_state.xml
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas        96 Mar 15 21:09 pilot_heartbeat.json
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas      1034 Mar 15 21:10 memory_monitor_summary.json
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas    383144 Mar 15 21:10 log.48958610._000976.job.log.tgz.1
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas      6363 Mar 15 21:10 heartbeat.json
[2026-03-15 21:10:47] -rw-r--r--. 1 boincer umatlas        27 Mar 15 21:10 wrapper_checkpoint.txt
[2026-03-15 21:10:47] -rw-r--r--. 1 boincer umatlas      8192 Mar 15 21:10 boinc_mmap_file
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas      5076 Mar 15 21:10 pilotlog.txt
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas   1103110 Mar 15 21:10 log.48958610._000976.job.log.1
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas       357 Mar 15 21:10 output.list
[2026-03-15 21:10:47] -rw-r--r--. 1 boincer umatlas       620 Mar 15 21:10 runtime_log
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas   1505280 Mar 15 21:10 result.tar.gz
[2026-03-15 21:10:47] -rw-r--r--. 1 boincer umatlas      9426 Mar 15 21:10 runtime_log.err
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas       777 Mar 15 21:10 PyEMDmCxBJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmpnWLDmdadmSn.diag
[2026-03-15 21:10:47] -rw-r--r--. 1 boincer umatlas     23137 Mar 15 21:10 stderr.txt
[2026-03-15 21:10:47] HITS file was successfully produced:
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas 181252933 Mar 15 21:09 shared/HITS.pool.root.1
[2026-03-15 21:10:47]  *** Contents of shared directory: ***
[2026-03-15 21:10:47] total 434304
[2026-03-15 21:10:47] -rw-r--r--. 3 boincer umatlas 261340159 Mar 15 18:55 ATLAS.root_0
[2026-03-15 21:10:47] -rw-r--r--. 2 boincer umatlas     15845 Mar 15 18:55 start_atlas.sh
[2026-03-15 21:10:47] -rw-r--r--. 2 boincer umatlas    597937 Mar 15 18:55 input.tar.gz
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas 181252933 Mar 15 21:09 HITS.pool.root.1
[2026-03-15 21:10:47] -rw-------. 1 boincer umatlas   1505280 Mar 15 21:10 result.tar.gz
21:10:48 (708742): run_atlas exited; CPU time 58892.156746
21:10:48 (708742): called boinc_finish(0)

</stderr_txt>
]]>

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