Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:55:46 (673944): wrapper (7.7.26015): starting
18:55:46 (673944): wrapper: running run_atlas (--nthreads 8)
[2026-03-15 18:55:46] Arguments: --nthreads 8
[2026-03-15 18:55:46] Threads: 8
[2026-03-15 18:55:46] Checking for CVMFS
[2026-03-15 18:55:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 18:55:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 18:55:46] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 18:55:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 18:55:46] 2.13.3.0 8454 116751 281492 157330 0 479 35310069 39288832 2289 16776704 0 56823605 99.646 65276099 32768 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-15 18:55:46] CVMFS is ok
[2026-03-15 18:55:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 18:55:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 18:55:46] Further information can be found at the LHC@home message board.
[2026-03-15 18:55:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 18:55:46] Checking for apptainer binary...
[2026-03-15 18:55:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 18:55:46] Running /usr/bin/apptainer --version
[2026-03-15 18:55:46] apptainer version 1.4.5-2.el9
[2026-03-15 18:55:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 18:55:46] c-211-31.aglt2.org
[2026-03-15 18:55:46] apptainer works
[2026-03-15 18:55:46] Set ATHENA_PROC_NUMBER=8
[2026-03-15 18:55:46] Set ATHENA_CORE_NUMBER=8
[2026-03-15 18:55:46] Starting ATLAS job with PandaID=7039181638
[2026-03-15 18:55:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:02:21 (708745): wrapper (7.7.26015): starting
19:02:21 (708745): wrapper: running run_atlas (--nthreads 8)
[2026-03-15 19:02:21] Arguments: --nthreads 8
[2026-03-15 19:02:21] Threads: 8
[2026-03-15 19:02:21] This job has been restarted, cleaning up previous attempt
[2026-03-15 19:02:21] Checking for CVMFS
[2026-03-15 19:02:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 19:02:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 19:02:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 19:02:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 19:02:22] 2.13.3.0 8454 116758 278932 157330 1 481 35310069 39288832 45 16776704 0 56895301 99.646 65276100 32768 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-15 19:02:22] CVMFS is ok
[2026-03-15 19:02:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 19:02:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 19:02:22] Further information can be found at the LHC@home message board.
[2026-03-15 19:02:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 19:02:22] Checking for apptainer binary...
[2026-03-15 19:02:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 19:02:22] Running /usr/bin/apptainer --version
[2026-03-15 19:02:22] apptainer version 1.4.5-2.el9
[2026-03-15 19:02:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 19:02:22] c-211-31.aglt2.org
[2026-03-15 19:02:22] apptainer works
[2026-03-15 19:02:22] Set ATHENA_PROC_NUMBER=8
[2026-03-15 19:02:22] Set ATHENA_CORE_NUMBER=8
[2026-03-15 19:02:22] Starting ATLAS job with PandaID=7039181638
[2026-03-15 19:02:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 21:06:45]  *** The last 200 lines of the pilot log: ***
[2026-03-15 21:06:45] 2026-03-16 01:06:01,525 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7039181638/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 21:06:45] 2026-03-16 01:06:01,526 | INFO     | extracted standard info from prmon json
[2026-03-15 21:06:45] 2026-03-16 01:06:01,526 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 21:06:45] 2026-03-16 01:06:01,526 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 21:06:45] 2026-03-16 01:06:01,527 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 21:06:45] 2026-03-16 01:06:01,527 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 21:06:45] 2026-03-16 01:06:01,530 | INFO     | fitting pss+swap vs Time
[2026-03-15 21:06:45] 2026-03-16 01:06:01,531 | INFO     | sum of square deviations: 563026370.5
[2026-03-15 21:06:45] 2026-03-16 01:06:01,532 | INFO     | sum of deviations: 8639259688.0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,532 | INFO     | mean x: 1773619458.5
[2026-03-15 21:06:45] 2026-03-16 01:06:01,532 | INFO     | mean y: 2474674.344262295
[2026-03-15 21:06:45] 2026-03-16 01:06:01,532 | INFO     | intersect: -27212518960.969734
[2026-03-15 21:06:45] 2026-03-16 01:06:01,533 | INFO     | chi2: 1.8444041465720455
[2026-03-15 21:06:45] 2026-03-16 01:06:01,533 | INFO     | sum of square deviations: 496597218.0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,534 | INFO     | sum of deviations: 15674113358.0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,534 | INFO     | mean x: 1773619306.0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,534 | INFO     | mean y: 2490241.564102564
[2026-03-15 21:06:45] 2026-03-16 01:06:01,534 | INFO     | intersect: -55978310795.02425
[2026-03-15 21:06:45] 2026-03-16 01:06:01,535 | INFO     | chi2: 1.156039859281998
[2026-03-15 21:06:45] 2026-03-16 01:06:01,535 | INFO     | current chi2=1.156039859281998 (change=37.32177075015911 %)
[2026-03-15 21:06:45] 2026-03-16 01:06:01,535 | INFO     | sum of square deviations: 435610028.0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,536 | INFO     | sum of deviations: 14919420900.5
[2026-03-15 21:06:45] 2026-03-16 01:06:01,536 | INFO     | mean x: 1773619153.5
[2026-03-15 21:06:45] 2026-03-16 01:06:01,536 | INFO     | mean y: 2488353.3839285714
[2026-03-15 21:06:45] 2026-03-16 01:06:01,536 | INFO     | intersect: -60743061490.2368
[2026-03-15 21:06:45] 2026-03-16 01:06:01,537 | INFO     | chi2: 1.1572231646472095
[2026-03-15 21:06:45] 2026-03-16 01:06:01,537 | INFO     | current chi2=1.1572231646472095 (change=-0.1023585264565559 %)
[2026-03-15 21:06:45] 2026-03-16 01:06:01,537 | INFO     | right removable region: 111
[2026-03-15 21:06:45] 2026-03-16 01:06:01,537 | INFO     | sum of square deviations: 496597218.0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,538 | INFO     | sum of deviations: -5651538431.0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,538 | INFO     | mean x: 1773619611.0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,538 | INFO     | mean y: 2506737.230769231
[2026-03-15 21:06:45] 2026-03-16 01:06:01,539 | INFO     | intersect: 20187233977.369617
[2026-03-15 21:06:45] 2026-03-16 01:06:01,539 | INFO     | chi2: 0.7137278372018665
[2026-03-15 21:06:45] 2026-03-16 01:06:01,539 | INFO     | current chi2=0.7137278372018665 (change=61.30306698082523 %)
[2026-03-15 21:06:45] 2026-03-16 01:06:01,539 | INFO     | sum of square deviations: 435610028.0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,540 | INFO     | sum of deviations: -4822963383.5
[2026-03-15 21:06:45] 2026-03-16 01:06:01,540 | INFO     | mean x: 1773619763.5
[2026-03-15 21:06:45] 2026-03-16 01:06:01,541 | INFO     | mean y: 2504650.1696428573
[2026-03-15 21:06:45] 2026-03-16 01:06:01,541 | INFO     | intersect: 19639571351.51847
[2026-03-15 21:06:45] 2026-03-16 01:06:01,541 | INFO     | chi2: 0.71314008613675
[2026-03-15 21:06:45] 2026-03-16 01:06:01,541 | INFO     | current chi2=0.71314008613675 (change=0.08234946634851689 %)
[2026-03-15 21:06:45] 2026-03-16 01:06:01,541 | INFO     | left removable region: 20
[2026-03-15 21:06:45] 2026-03-16 01:06:01,542 | INFO     | sum of square deviations: 233641590.0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,542 | INFO     | sum of deviations: 892049664.9999999
[2026-03-15 21:06:45] 2026-03-16 01:06:01,542 | INFO     | mean x: 1773619733.0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,543 | INFO     | mean y: 2526372.340659341
[2026-03-15 21:06:45] 2026-03-16 01:06:01,543 | INFO     | intersect: -6769199880.078866
[2026-03-15 21:06:45] 2026-03-16 01:06:01,543 | INFO     | chi2: 9.016711233230469e-05
[2026-03-15 21:06:45] 2026-03-16 01:06:01,543 | INFO     | current memory leak: 3.82 B/s (using 91 data points, chi2=0.00)
[2026-03-15 21:06:45] 2026-03-16 01:06:01,544 | INFO     | could have reported an average CPU frequency of 3065 MHz (8 samples)
[2026-03-15 21:06:45] 2026-03-16 01:06:01,544 | INFO     | ..............................
[2026-03-15 21:06:45] 2026-03-16 01:06:01,544 | INFO     | . Timing measurements:
[2026-03-15 21:06:45] 2026-03-16 01:06:01,544 | INFO     | . get job = 0 s
[2026-03-15 21:06:45] 2026-03-16 01:06:01,545 | INFO     | . initial setup = 0 s
[2026-03-15 21:06:45] 2026-03-16 01:06:01,545 | INFO     | . payload setup = 4 s
[2026-03-15 21:06:45] 2026-03-16 01:06:01,545 | INFO     | . stage-in = 0 s
[2026-03-15 21:06:45] 2026-03-16 01:06:01,545 | INFO     | . payload execution = 7389 s
[2026-03-15 21:06:45] 2026-03-16 01:06:01,545 | INFO     | . stage-out = 0 s
[2026-03-15 21:06:45] 2026-03-16 01:06:01,545 | INFO     | . log creation = 0 s
[2026-03-15 21:06:45] 2026-03-16 01:06:01,545 | INFO     | ..............................
[2026-03-15 21:06:45] 2026-03-16 01:06:01,690 | INFO     | 
[2026-03-15 21:06:45] 2026-03-16 01:06:01,691 | INFO     | job summary report
[2026-03-15 21:06:45] 2026-03-16 01:06:01,691 | INFO     | --------------------------------------------------
[2026-03-15 21:06:45] 2026-03-16 01:06:01,691 | INFO     | PanDA job id: 7039181638
[2026-03-15 21:06:45] 2026-03-16 01:06:01,691 | INFO     | task id: 48955010
[2026-03-15 21:06:45] 2026-03-16 01:06:01,692 | INFO     | errors: (none)
[2026-03-15 21:06:45] 2026-03-16 01:06:01,692 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 21:06:45] 2026-03-16 01:06:01,692 | INFO     | pilot state: finished 
[2026-03-15 21:06:45] 2026-03-16 01:06:01,692 | INFO     | transexitcode: 0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,692 | INFO     | exeerrorcode: 0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,692 | INFO     | exeerrordiag: 
[2026-03-15 21:06:45] 2026-03-16 01:06:01,693 | INFO     | exitcode: 0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,693 | INFO     | exitmsg: OK
[2026-03-15 21:06:45] 2026-03-16 01:06:01,693 | INFO     | cpuconsumptiontime: 56392 s
[2026-03-15 21:06:45] 2026-03-16 01:06:01,693 | INFO     | nevents: 400
[2026-03-15 21:06:45] 2026-03-16 01:06:01,693 | INFO     | neventsw: 0
[2026-03-15 21:06:45] 2026-03-16 01:06:01,693 | INFO     | pid: 733315
[2026-03-15 21:06:45] 2026-03-16 01:06:01,694 | INFO     | pgrp: 733315
[2026-03-15 21:06:45] 2026-03-16 01:06:01,694 | INFO     | corecount: 8
[2026-03-15 21:06:45] 2026-03-16 01:06:01,694 | INFO     | event service: False
[2026-03-15 21:06:45] 2026-03-16 01:06:01,694 | INFO     | sizes: {0: 2280179, 11: 2280179, 7397: 2307631, 7399: 2316685, 7401: 2316823}
[2026-03-15 21:06:45] 2026-03-16 01:06:01,694 | INFO     | --------------------------------------------------
[2026-03-15 21:06:45] 2026-03-16 01:06:01,694 | INFO     | 
[2026-03-15 21:06:45] 2026-03-16 01:06:01,695 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-03-15 21:06:45] 2026-03-16 01:06:01,716 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,717 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,717 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,717 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,717 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,718 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,718 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,718 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,718 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,719 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,720 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,720 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,720 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,720 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,721 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 21:06:45] 2026-03-16 01:06:01,721 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,721 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 21:06:45] 2026-03-16 01:06:01,721 | INFO     | job 7039181638 has completed (purged errors)
[2026-03-15 21:06:45] 2026-03-16 01:06:01,722 | INFO     | overall cleanup function is called
[2026-03-15 21:06:45] 2026-03-16 01:06:01,976 | WARNING  | process 733315 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 21:06:45] 2026-03-16 01:06:02,205 | INFO     | using path: /tmp/boinchome/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 21:06:45] 2026-03-16 01:06:02,473 | INFO     | number of running child processes to parent process 733315: 1
[2026-03-15 21:06:45] 2026-03-16 01:06:02,473 | INFO     | maximum number of monitored processes: 6
[2026-03-15 21:06:45] 2026-03-16 01:06:02,473 | INFO     | aborting job monitoring since job object (job id=7039181638) has expired
[2026-03-15 21:06:45] 2026-03-16 01:06:02,733 | INFO     | --- collectZombieJob: --- 10, [733315]
[2026-03-15 21:06:45] 2026-03-16 01:06:02,733 | INFO     | zombie collector waiting for pid 733315
[2026-03-15 21:06:45] 2026-03-16 01:06:02,733 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 21:06:45] 2026-03-16 01:06:02,733 | INFO     | collected zombie processes
[2026-03-15 21:06:45] 2026-03-16 01:06:02,733 | INFO     | will attempt to kill all subprocesses of pid=733315
[2026-03-15 21:06:45] 2026-03-16 01:06:02,897 | INFO     | process IDs to be killed: [733315] (in reverse order)
[2026-03-15 21:06:45] 2026-03-16 01:06:02,968 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 21:06:45] 2026-03-16 01:06:02,968 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 21:06:45] 2026-03-16 01:06:02,979 | INFO     | did not find any defunct processes belonging to 733315
[2026-03-15 21:06:45] 2026-03-16 01:06:02,989 | INFO     | did not find any defunct processes belonging to 733315
[2026-03-15 21:06:45] 2026-03-16 01:06:02,989 | INFO     | ready for new job
[2026-03-15 21:06:45] 2026-03-16 01:06:02,989 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 21:06:45] 2026-03-16 01:06:02,991 | INFO     | **************************************
[2026-03-15 21:06:45] 2026-03-16 01:06:02,991 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-15 21:06:45] 2026-03-16 01:06:02,992 | INFO     | **************************************
[2026-03-15 21:06:45] 2026-03-16 01:06:02,992 | INFO     | 
[2026-03-15 21:06:45] 2026-03-16 01:06:02,994 | INFO     | architecture information:
[2026-03-15 21:06:45] 2026-03-16 01:06:02,994 | INFO     | executing command: cat /etc/os-release
[2026-03-15 21:06:45] 2026-03-16 01:06:03,007 | INFO     | cat /etc/os-release:
[2026-03-15 21:06:45] NAME="CentOS Linux"
[2026-03-15 21:06:45] VERSION="7 (Core)"
[2026-03-15 21:06:45] ID="centos"
[2026-03-15 21:06:45] ID_LIKE="rhel fedora"
[2026-03-15 21:06:45] VERSION_ID="7"
[2026-03-15 21:06:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 21:06:45] ANSI_COLOR="0;31"
[2026-03-15 21:06:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 21:06:45] HOME_URL="https://www.centos.org/"
[2026-03-15 21:06:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 21:06:45] 
[2026-03-15 21:06:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 21:06:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 21:06:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 21:06:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 21:06:45] 
[2026-03-15 21:06:45] 2026-03-16 01:06:03,008 | INFO     | **************************************
[2026-03-15 21:06:45] 2026-03-16 01:06:03,511 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-03-15 21:06:45] 2026-03-16 01:06:03,526 | INFO     | sufficient remaining disk space (50510954496 B)
[2026-03-15 21:06:45] 2026-03-16 01:06:03,527 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 21:06:45] 2026-03-16 01:06:03,527 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 21:06:45] 2026-03-16 01:06:03,527 | INFO     | update_server=False
[2026-03-15 21:06:45] 2026-03-16 01:06:03,527 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 21:06:45] 2026-03-16 01:06:03,528 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-15 21:06:45] 2026-03-16 01:06:03,528 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 21:06:45] 2026-03-16 01:06:03,528 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 21:06:45] 2026-03-16 01:06:03,529 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 21:06:45] 2026-03-16 01:06:03,529 | INFO     | aborting loop
[2026-03-15 21:06:45] 2026-03-16 01:06:03,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 21:06:45] 2026-03-16 01:06:03,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 21:06:45] 2026-03-16 01:06:03,837 | INFO     | all data control threads have been joined
[2026-03-15 21:06:45] 2026-03-16 01:06:04,530 | INFO     | [job] retrieve thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:04,534 | INFO     | [job] queue monitor thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:04,535 | INFO     | [job] job monitor thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:04,647 | INFO     | [data] copytool_in thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:04,718 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:04,843 | INFO     | [data] control thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:04,852 | INFO     | all payload control threads have been joined
[2026-03-15 21:06:45] 2026-03-16 01:06:04,988 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 21:06:45] 2026-03-16 01:06:05,155 | INFO     | all job control threads have been joined
[2026-03-15 21:06:45] 2026-03-16 01:06:05,174 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:05,232 | INFO     | [payload] validate_post thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:05,491 | INFO     | [job] validate thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:05,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 21:06:45] 2026-03-16 01:06:05,717 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:05,809 | INFO     | [payload] failed_post thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:05,833 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:05,858 | INFO     | [payload] control thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:06,160 | INFO     | [job] control thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:06,994 | INFO     | [data] copytool_out thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:09,631 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 21:06:45] 2026-03-16 01:06:39,263 | INFO     | [monitor] cgroup control has ended
[2026-03-15 21:06:45] 2026-03-16 01:06:40,418 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140640510961472)>', '<ExcThread(monitor, started 140640146929408)>']
[2026-03-15 21:06:45] 2026-03-16 01:06:40,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 21:06:45] 2026-03-16 01:06:40,707 | INFO     | [monitor] control thread has ended
[2026-03-15 21:06:45] 2026-03-16 01:06:45,444 | INFO     | all workflow threads have been joined
[2026-03-15 21:06:45] 2026-03-16 01:06:45,444 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 21:06:45] 2026-03-16 01:06:45,444 | INFO     | traces error code: 0
[2026-03-15 21:06:45] 2026-03-16 01:06:45,445 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 21:06:45] 2026-03-16 01:06:45,538 [wrapper] ==== pilot stdout END ====
[2026-03-15 21:06:45] 2026-03-16 01:06:45,540 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 21:06:45] 2026-03-16 01:06:45,542 [wrapper] pilotpid: 723707
[2026-03-15 21:06:45] 2026-03-16 01:06:45,545 [wrapper] Pilot exit status: 0
[2026-03-15 21:06:45] 2026-03-16 01:06:45,552 [wrapper] pandaids: 7039181638 7039181638
[2026-03-15 21:06:45] 2026-03-16 01:06:45,582 [wrapper] cleanup supervisor_pilot  881455 723708
[2026-03-15 21:06:45] 2026-03-16 01:06:45,584 [wrapper] Test setup, not cleaning
[2026-03-15 21:06:45] 2026-03-16 01:06:45,586 [wrapper] apfmon messages muted
[2026-03-15 21:06:45] 2026-03-16 01:06:45,589 [wrapper] ==== wrapper stdout END ====
[2026-03-15 21:06:45] 2026-03-16 01:06:45,591 [wrapper] ==== wrapper stderr END ====
[2026-03-15 21:06:45]  *** Error codes and diagnostics ***
[2026-03-15 21:06:45]     "exeErrorCode": 0,
[2026-03-15 21:06:45]     "exeErrorDiag": "",
[2026-03-15 21:06:45]     "pilotErrorCode": 0,
[2026-03-15 21:06:45]     "pilotErrorDiag": "",
[2026-03-15 21:06:45]  *** Listing of results directory ***
[2026-03-15 21:06:45] total 1050564
[2026-03-15 21:06:45] drwx------. 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-03-15 21:06:45] -rwx------. 1 boincer umatlas     36322 Mar  7 13:09 runpilot2-wrapper.sh
[2026-03-15 21:06:45] -rw-r--r--. 1 boincer umatlas    584627 Mar  7 13:09 pilot3.tar.gz
[2026-03-15 21:06:45] -rw-r--r--. 1 boincer umatlas      5111 Mar  7 13:10 queuedata.json
[2026-03-15 21:06:45] -rw-r--r--. 1 boincer umatlas       100 Mar 15 18:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 21:06:45] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 15 18:55 run_atlas
[2026-03-15 21:06:45] -rw-r--r--. 1 boincer umatlas       105 Mar 15 18:55 job.xml
[2026-03-15 21:06:45] -rw-r--r--. 3 boincer umatlas 442558193 Mar 15 18:55 EVNT.46701403._001252.pool.root.1
[2026-03-15 21:06:45] -rw-r--r--. 3 boincer umatlas 442558193 Mar 15 18:55 ATLAS.root_0
[2026-03-15 21:06:45] -rw-r--r--. 2 boincer umatlas     15845 Mar 15 18:55 start_atlas.sh
[2026-03-15 21:06:45] drwxrwx--x. 2 boincer umatlas      4096 Mar 15 18:55 shared
[2026-03-15 21:06:45] -rw-r--r--. 2 boincer umatlas    597951 Mar 15 18:55 input.tar.gz
[2026-03-15 21:06:45] -rw-r--r--. 1 boincer umatlas         0 Mar 15 18:55 boinc_lockfile
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas   1511579 Mar 15 18:55 agis_ddmendpoints.agis.ALL.json
[2026-03-15 21:06:45] -rw-r--r--. 1 boincer umatlas      2563 Mar 15 19:02 pandaJob.out
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas        57 Mar 15 19:02 setup.sh.local
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas   1006471 Mar 15 19:02 agis_schedconf.cvmfs.json
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas       442 Mar 15 19:02 workernode_map.json
[2026-03-15 21:06:45] -rw-r--r--. 1 boincer umatlas      6524 Mar 15 21:01 init_data.xml
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas 183783478 Mar 15 21:05 HITS.48955010._012602.pool.root.1
[2026-03-15 21:06:45] -rw-r--r--. 1 boincer umatlas       530 Mar 15 21:05 boinc_task_state.xml
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas        96 Mar 15 21:05 pilot_heartbeat.json
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas      1030 Mar 15 21:05 memory_monitor_summary.json
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas    400543 Mar 15 21:05 log.48955010._012602.job.log.tgz.1
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas      6371 Mar 15 21:06 heartbeat.json
[2026-03-15 21:06:45] -rw-r--r--. 1 boincer umatlas      8192 Mar 15 21:06 boinc_mmap_file
[2026-03-15 21:06:45] -rw-r--r--. 1 boincer umatlas        27 Mar 15 21:06 wrapper_checkpoint.txt
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas      4548 Mar 15 21:06 pilotlog.txt
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas   1068738 Mar 15 21:06 log.48955010._012602.job.log.1
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas       357 Mar 15 21:06 output.list
[2026-03-15 21:06:45] -rw-r--r--. 1 boincer umatlas       620 Mar 15 21:06 runtime_log
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas   1484800 Mar 15 21:06 result.tar.gz
[2026-03-15 21:06:45] -rw-r--r--. 1 boincer umatlas      9426 Mar 15 21:06 runtime_log.err
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas       776 Mar 15 21:06 CbYNDmQGBJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm5jWLDmZB5jfn.diag
[2026-03-15 21:06:45] -rw-r--r--. 1 boincer umatlas     23156 Mar 15 21:06 stderr.txt
[2026-03-15 21:06:45] HITS file was successfully produced:
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas 183783478 Mar 15 21:05 shared/HITS.pool.root.1
[2026-03-15 21:06:45]  *** Contents of shared directory: ***
[2026-03-15 21:06:45] total 613724
[2026-03-15 21:06:45] -rw-r--r--. 3 boincer umatlas 442558193 Mar 15 18:55 ATLAS.root_0
[2026-03-15 21:06:45] -rw-r--r--. 2 boincer umatlas     15845 Mar 15 18:55 start_atlas.sh
[2026-03-15 21:06:45] -rw-r--r--. 2 boincer umatlas    597951 Mar 15 18:55 input.tar.gz
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas 183783478 Mar 15 21:05 HITS.pool.root.1
[2026-03-15 21:06:45] -rw-------. 1 boincer umatlas   1484800 Mar 15 21:06 result.tar.gz
21:06:46 (708745): run_atlas exited; CPU time 56649.369465
21:06:46 (708745): called boinc_finish(0)

</stderr_txt>
]]>

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