Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:05:40 (280467): wrapper (7.7.26015): starting
23:05:40 (280467): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 23:05:40] Arguments: --nthreads 4
[2026-03-15 23:05:40] Threads: 4
[2026-03-15 23:05:40] Checking for CVMFS
[2026-03-15 23:05:40] No cvmfs_config command found, will try listing directly
[2026-03-15 23:05:40] CVMFS is ok
[2026-03-15 23:05:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 23:05:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 23:05:40] Further information can be found at the LHC@home message board.
[2026-03-15 23:05:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 23:05:40] Checking for apptainer binary...
[2026-03-15 23:05:40] which: no apptainer in ((null))
[2026-03-15 23:05:40] apptainer is not installed, using version from CVMFS
[2026-03-15 23:05:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 23:05:41] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot68/slots/13/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-03-15 23:05:41] apptainer works
[2026-03-15 23:05:41] Set ATHENA_PROC_NUMBER=4
[2026-03-15 23:05:41] Set ATHENA_CORE_NUMBER=4
[2026-03-15 23:05:41] Starting ATLAS job with PandaID=7056217258
[2026-03-15 23:05:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot68/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-16 00:42:06]  *** The last 200 lines of the pilot log: ***
[2026-03-16 00:42:06]  guid=3c8fd225-37a8-45aa-bfde-881457d3e98a
[2026-03-16 00:42:06]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-16 00:42:06]  is_altstaged=None
[2026-03-16 00:42:06]  is_tar=False
[2026-03-16 00:42:06]  lfn=log.48967085._024145.job.log.tgz.1
[2026-03-16 00:42:06]  mtime=0
[2026-03-16 00:42:06]  protocol_id=None
[2026-03-16 00:42:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-16 00:42:06]  replicas=None
[2026-03-16 00:42:06]  scope=mc23_13p6TeV
[2026-03-16 00:42:06]  status=None
[2026-03-16 00:42:06]  status_code=0
[2026-03-16 00:42:06]  storage_token=
[2026-03-16 00:42:06]  surl=/var/lib/boinc/var/slot68/slots/13/PanDA_Pilot-7056217258/log.48967085._024145.job.log.tgz.1
[2026-03-16 00:42:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/30/log.48967085._024145.job.log.tgz.1
[2026-03-16 00:42:06]  workdir=None
[2026-03-16 00:42:06] ]
[2026-03-16 00:42:06] 2026-03-15 23:41:04,318 | INFO     | transferring file log.48967085._024145.job.log.tgz.1 from /var/lib/boinc/var/slot68/slots/13/PanDA_Pilot-7056217258/log.48967085._024145.job.log.tgz.1 to /var/lib/
[2026-03-16 00:42:06] 2026-03-15 23:41:04,318 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot68/slots/13/PanDA_Pilot-7056217258/log.48967085._024145.job.log.tgz.1 /var/lib/boinc/var/slot68/slots/13/
[2026-03-16 00:42:06] 2026-03-15 23:41:04,329 | INFO     | adding to output.list: log.48967085._024145.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/30/log.48967085._024145.job.log.tg
[2026-03-16 00:42:06] 2026-03-15 23:41:04,330 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-16 00:42:06] 2026-03-15 23:41:04,330 | INFO     | summary of transferred files:
[2026-03-16 00:42:06] 2026-03-15 23:41:04,330 | INFO     |  -- lfn=log.48967085._024145.job.log.tgz.1, status_code=0, status=transferred
[2026-03-16 00:42:06] 2026-03-15 23:41:04,330 | INFO     | stage-out finished correctly
[2026-03-16 00:42:06] 2026-03-15 23:41:05,374 | INFO     | time since job start (5712s) is within the limit (345600.0s)
[2026-03-16 00:42:06] 2026-03-15 23:41:05,417 | INFO     | monitor loop #414: job 0:7056217258 is in state 'finished'
[2026-03-16 00:42:06] 2026-03-15 23:41:05,417 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-16 00:42:06] 2026-03-15 23:41:05,629 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-16 00:42:06] 2026-03-15 23:41:07,239 | INFO     | job 7056217258 has state=finished
[2026-03-16 00:42:06] 2026-03-15 23:41:07,240 | INFO     | preparing for final server update for job 7056217258 in state='finished'
[2026-03-16 00:42:06] 2026-03-15 23:41:07,240 | INFO     | reading metadata from: /var/lib/boinc/var/slot68/slots/13/PanDA_Pilot-7056217258/jobReport.json
[2026-03-16 00:42:06] 2026-03-15 23:41:07,242 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot68/slots/13/workernode_map.json
[2026-03-16 00:42:06] 2026-03-15 23:41:07,242 | INFO     | this job has now completed (state=finished)
[2026-03-16 00:42:06] 2026-03-15 23:41:07,242 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-16 00:42:06] 2026-03-15 23:41:07,242 | INFO     | log transfer has been attempted: DONE
[2026-03-16 00:42:06] 2026-03-15 23:41:07,242 | INFO     | job 7056217258 has finished - writing final server update
[2026-03-16 00:42:06] 2026-03-15 23:41:07,242 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3411592/.job.ad'
[2026-03-16 00:42:06] 2026-03-15 23:41:07,242 | INFO     | total number of processed events: 400 (read)
[2026-03-16 00:42:06] 2026-03-15 23:41:07,259 | INFO     | using path: /var/lib/boinc/var/slot68/slots/13/PanDA_Pilot-7056217258/memory_monitor_summary.json (trf name=prmon)
[2026-03-16 00:42:06] 2026-03-15 23:41:07,260 | INFO     | extracted standard info from prmon json
[2026-03-16 00:42:06] 2026-03-15 23:41:07,260 | INFO     | extracted standard memory fields from prmon json
[2026-03-16 00:42:06] 2026-03-15 23:41:07,260 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-16 00:42:06] 2026-03-15 23:41:07,260 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-16 00:42:06] 2026-03-15 23:41:07,260 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-16 00:42:06] 2026-03-15 23:41:07,261 | INFO     | fitting pss+swap vs Time
[2026-03-16 00:42:06] 2026-03-15 23:41:07,261 | INFO     | sum of square deviations: 204163828.0
[2026-03-16 00:42:06] 2026-03-15 23:41:07,261 | INFO     | sum of deviations: 883753238.0000001
[2026-03-16 00:42:06] 2026-03-15 23:41:07,261 | INFO     | mean x: 1773615300.0
[2026-03-16 00:42:06] 2026-03-15 23:41:07,261 | INFO     | mean y: 2322337.2298850575
[2026-03-16 00:42:06] 2026-03-15 23:41:07,261 | INFO     | intersect: -7675033047.884376
[2026-03-16 00:42:06] 2026-03-15 23:41:07,262 | INFO     | chi2: 0.00036655188552123144
[2026-03-16 00:42:06] 2026-03-15 23:41:07,262 | INFO     | current memory leak: 4.33 B/s (using 87 data points, chi2=0.00)
[2026-03-16 00:42:06] 2026-03-15 23:41:07,262 | INFO     | could have reported an average CPU frequency of 3599 MHz (7 samples)
[2026-03-16 00:42:06] 2026-03-15 23:41:07,262 | INFO     | ..............................
[2026-03-16 00:42:06] 2026-03-15 23:41:07,262 | INFO     | . Timing measurements:
[2026-03-16 00:42:06] 2026-03-15 23:41:07,262 | INFO     | . get job = 0 s
[2026-03-16 00:42:06] 2026-03-15 23:41:07,262 | INFO     | . initial setup = 4 s
[2026-03-16 00:42:06] 2026-03-15 23:41:07,262 | INFO     | . payload setup = 4 s
[2026-03-16 00:42:06] 2026-03-15 23:41:07,262 | INFO     | . stage-in = 0 s
[2026-03-16 00:42:06] 2026-03-15 23:41:07,262 | INFO     | . payload execution = 5692 s
[2026-03-16 00:42:06] 2026-03-15 23:41:07,262 | INFO     | . stage-out = 0 s
[2026-03-16 00:42:06] 2026-03-15 23:41:07,262 | INFO     | . log creation = 0 s
[2026-03-16 00:42:06] 2026-03-15 23:41:07,262 | INFO     | ..............................
[2026-03-16 00:42:06] 2026-03-15 23:41:07,383 | INFO     | time since job start (5714s) is within the limit (345600.0s)
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | 
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | job summary report
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | --------------------------------------------------
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | PanDA job id: 7056217258
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | task id: 48967085
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | errors: (none)
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | pilot state: finished 
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | transexitcode: 0
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | exeerrorcode: 0
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | exeerrordiag: 
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | exitcode: 0
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | exitmsg: OK
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | cpuconsumptiontime: 21907 s
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | nevents: 400
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | neventsw: 0
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | pid: 291662
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | pgrp: 291662
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | corecount: 4
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | event service: False
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | sizes: {0: 2280256, 11: 2280256, 5700: 2315983, 5701: 2315983, 5703: 2316177}
[2026-03-16 00:42:06] 2026-03-15 23:41:07,513 | INFO     | --------------------------------------------------
[2026-03-16 00:42:06] 2026-03-15 23:41:07,514 | INFO     | 
[2026-03-16 00:42:06] 2026-03-15 23:41:07,514 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot68/slots/13
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,532 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-16 00:42:06] 2026-03-15 23:41:07,533 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,533 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-16 00:42:06] 2026-03-15 23:41:07,533 | INFO     | job 7056217258 has completed (purged errors)
[2026-03-16 00:42:06] 2026-03-15 23:41:07,533 | INFO     | overall cleanup function is called
[2026-03-16 00:42:06] 2026-03-15 23:41:08,539 | INFO     | --- collectZombieJob: --- 10, [291662]
[2026-03-16 00:42:06] 2026-03-15 23:41:08,539 | INFO     | zombie collector waiting for pid 291662
[2026-03-16 00:42:06] 2026-03-15 23:41:08,539 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-16 00:42:06] 2026-03-15 23:41:08,539 | INFO     | collected zombie processes
[2026-03-16 00:42:06] 2026-03-15 23:41:08,539 | INFO     | will attempt to kill all subprocesses of pid=291662
[2026-03-16 00:42:06] 2026-03-15 23:41:08,965 | INFO     | process IDs to be killed: [291662] (in reverse order)
[2026-03-16 00:42:06] 2026-03-15 23:41:09,170 | WARNING  | found no corresponding commands to process id(s)
[2026-03-16 00:42:06] 2026-03-15 23:41:09,170 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-16 00:42:06] 2026-03-15 23:41:09,198 | INFO     | did not find any defunct processes belonging to 291662
[2026-03-16 00:42:06] 2026-03-15 23:41:09,224 | INFO     | did not find any defunct processes belonging to 291662
[2026-03-16 00:42:06] 2026-03-15 23:41:09,225 | INFO     | ready for new job
[2026-03-16 00:42:06] 2026-03-15 23:41:09,225 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-16 00:42:06] 2026-03-15 23:41:09,226 | INFO     | **************************************
[2026-03-16 00:42:06] 2026-03-15 23:41:09,226 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-16 00:42:06] 2026-03-15 23:41:09,226 | INFO     | **************************************
[2026-03-16 00:42:06] 2026-03-15 23:41:09,226 | INFO     | 
[2026-03-16 00:42:06] 2026-03-15 23:41:09,231 | INFO     | architecture information:
[2026-03-16 00:42:06] 2026-03-15 23:41:09,231 | INFO     | executing command: cat /etc/os-release
[2026-03-16 00:42:06] 2026-03-15 23:41:09,242 | INFO     | cat /etc/os-release:
[2026-03-16 00:42:06] NAME="CentOS Linux"
[2026-03-16 00:42:06] VERSION="7 (Core)"
[2026-03-16 00:42:06] ID="centos"
[2026-03-16 00:42:06] ID_LIKE="rhel fedora"
[2026-03-16 00:42:06] VERSION_ID="7"
[2026-03-16 00:42:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-16 00:42:06] ANSI_COLOR="0;31"
[2026-03-16 00:42:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-16 00:42:06] HOME_URL="https://www.centos.org/"
[2026-03-16 00:42:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-16 00:42:06] 
[2026-03-16 00:42:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-16 00:42:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-16 00:42:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-16 00:42:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-16 00:42:06] 
[2026-03-16 00:42:06] 2026-03-15 23:41:09,242 | INFO     | **************************************
[2026-03-16 00:42:06] 2026-03-15 23:41:09,745 | INFO     | executing command: df -mP /var/lib/boinc/var/slot68/slots/13
[2026-03-16 00:42:06] 2026-03-15 23:41:09,760 | INFO     | sufficient remaining disk space (194004385792 B)
[2026-03-16 00:42:06] 2026-03-15 23:41:09,761 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-16 00:42:06] 2026-03-15 23:41:09,761 | INFO     | current server update state: UPDATING_FINAL
[2026-03-16 00:42:06] 2026-03-15 23:41:09,761 | INFO     | update_server=False
[2026-03-16 00:42:06] 2026-03-15 23:41:09,761 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-16 00:42:06] 2026-03-15 23:41:09,761 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-16 00:42:06] 2026-03-15 23:41:09,761 | INFO     | aborting loop
[2026-03-16 00:42:06] 2026-03-15 23:41:09,799 | INFO     | all payload control threads have been joined
[2026-03-16 00:42:06] 2026-03-15 23:41:09,809 | INFO     | all data control threads have been joined
[2026-03-16 00:42:06] 2026-03-15 23:41:09,883 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-16 00:42:06] 2026-03-15 23:41:10,266 | INFO     | all job control threads have been joined
[2026-03-16 00:42:06] 2026-03-15 23:41:10,762 | INFO     | [job] job monitor thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:10,763 | INFO     | [job] retrieve thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:10,795 | INFO     | [payload] failed_post thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:10,803 | INFO     | [payload] control thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:10,814 | INFO     | [data] control thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:10,851 | INFO     | [payload] execute_payloads thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:11,271 | INFO     | [job] control thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:11,290 | INFO     | [payload] validate_post thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:11,318 | INFO     | [job] validate thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:11,492 | INFO     | [job] create_data_payload thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:11,681 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-16 00:42:06] 2026-03-15 23:41:11,782 | INFO     | [payload] validate_pre thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:11,885 | INFO     | [data] copytool_out thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:12,000 | INFO     | [data] copytool_in thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:12,314 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-16 00:42:06] 2026-03-15 23:41:13,319 | INFO     | [job] queue monitor thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:15,686 | INFO     | [data] queue_monitor thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:20,311 | INFO     | job.realtimelogging is not enabled
[2026-03-16 00:42:06] 2026-03-15 23:41:21,322 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-16 00:42:06] 2026-03-15 23:41:40,960 | INFO     | PID=285048 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-16 00:42:06] 2026-03-15 23:41:40,960 | INFO     | .. there are 37 such processes running
[2026-03-16 00:42:06] 2026-03-15 23:41:40,960 | INFO     | found 0 job(s) in 20 queues
[2026-03-16 00:42:06] 2026-03-15 23:41:40,960 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-16 00:42:06] 2026-03-15 23:41:40,960 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-16 00:42:06] 2026-03-15 23:42:01,512 | INFO     | [monitor] cgroup control has ended
[2026-03-16 00:42:06] 2026-03-15 23:42:01,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23138454742848)>', '<ExcThread(monitor, started 23138219083520)>']
[2026-03-16 00:42:06] 2026-03-15 23:42:02,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-16 00:42:06] 2026-03-15 23:42:02,065 | INFO     | [monitor] control thread has ended
[2026-03-16 00:42:06] 2026-03-15 23:42:06,543 | INFO     | all workflow threads have been joined
[2026-03-16 00:42:06] 2026-03-15 23:42:06,543 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-16 00:42:06] 2026-03-15 23:42:06,543 | INFO     | traces error code: 0
[2026-03-16 00:42:06] 2026-03-15 23:42:06,543 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-16 00:42:06] 2026-03-15 23:42:06,669 [wrapper] ==== pilot stdout END ====
[2026-03-16 00:42:06] 2026-03-15 23:42:06,675 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-16 00:42:06] 2026-03-15 23:42:06,677 [wrapper] pilotpid: 285048
[2026-03-16 00:42:06] 2026-03-15 23:42:06,678 [wrapper] Pilot exit status: 0
[2026-03-16 00:42:06] 2026-03-15 23:42:06,687 [wrapper] pandaids: 7056217258
[2026-03-16 00:42:06] 2026-03-15 23:42:06,816 [wrapper] cleanup supervisor_pilot 1048975 285049
[2026-03-16 00:42:06] 2026-03-15 23:42:06,819 [wrapper] Test setup, not cleaning
[2026-03-16 00:42:06] 2026-03-15 23:42:06,822 [wrapper] apfmon messages muted
[2026-03-16 00:42:06] 2026-03-15 23:42:06,824 [wrapper] ==== wrapper stdout END ====
[2026-03-16 00:42:06] 2026-03-15 23:42:06,826 [wrapper] ==== wrapper stderr END ====
[2026-03-16 00:42:06]  *** Error codes and diagnostics ***
[2026-03-16 00:42:06]     "exeErrorCode": 0,
[2026-03-16 00:42:06]     "exeErrorDiag": "",
[2026-03-16 00:42:06]     "pilotErrorCode": 0,
[2026-03-16 00:42:06]     "pilotErrorDiag": "",
[2026-03-16 00:42:06]  *** Listing of results directory ***
[2026-03-16 00:42:06] total 410104
[2026-03-16 00:42:06] -rw-r--r--. 1 boinc boinc    585013 Mar 15 23:03 pilot3.tar.gz
[2026-03-16 00:42:06] -rwx------. 1 boinc boinc     36322 Mar 15 23:03 runpilot2-wrapper.sh
[2026-03-16 00:42:06] -rw-r--r--. 1 boinc boinc      5111 Mar 15 23:04 queuedata.json
[2026-03-16 00:42:06] -rw-r--r--. 1 boinc boinc       100 Mar 15 23:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-16 00:42:06] -rwxr-xr-x. 1 boinc boinc      7986 Mar 15 23:05 run_atlas
[2026-03-16 00:42:06] -rw-r--r--. 1 boinc boinc       105 Mar 15 23:05 job.xml
[2026-03-16 00:42:06] -rw-r--r--. 1 boinc boinc      6708 Mar 15 23:05 init_data.xml
[2026-03-16 00:42:06] -rw-r--r--. 2 boinc boinc 210984612 Mar 15 23:05 EVNT.48967083._000965.pool.root.1
[2026-03-16 00:42:06] -rw-r--r--. 2 boinc boinc     15845 Mar 15 23:05 start_atlas.sh
[2026-03-16 00:42:06] drwxrwx--x. 2 boinc boinc      4096 Mar 15 23:05 shared
[2026-03-16 00:42:06] -rw-r--r--. 2 boinc boinc    597517 Mar 15 23:05 input.tar.gz
[2026-03-16 00:42:06] -rw-r--r--. 1 boinc boinc         0 Mar 15 23:05 boinc_lockfile
[2026-03-16 00:42:06] -rw-r--r--. 1 boinc boinc      2565 Mar 15 23:05 pandaJob.out
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc   1006457 Mar 15 23:05 agis_schedconf.cvmfs.json
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc   1511579 Mar 15 23:05 agis_ddmendpoints.agis.ALL.json
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc       443 Mar 15 23:05 workernode_map.json
[2026-03-16 00:42:06] drwx------. 5 boinc boinc      4096 Mar 15 23:05 pilot3
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc 202782567 Mar 16 00:40 HITS.48967085._024145.pool.root.1
[2026-03-16 00:42:06] -rw-r--r--. 1 boinc boinc       529 Mar 16 00:40 boinc_task_state.xml
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc      1031 Mar 16 00:41 memory_monitor_summary.json
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc        95 Mar 16 00:41 pilot_heartbeat.json
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc    291699 Mar 16 00:41 log.48967085._024145.job.log.tgz.1
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc      6351 Mar 16 00:41 heartbeat.json
[2026-03-16 00:42:06] -rw-r--r--. 1 boinc boinc      8192 Mar 16 00:42 boinc_mmap_file
[2026-03-16 00:42:06] -rw-r--r--. 1 boinc boinc        27 Mar 16 00:42 wrapper_checkpoint.txt
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc      4902 Mar 16 00:42 pilotlog.txt
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc    830668 Mar 16 00:42 log.48967085._024145.job.log.1
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc       357 Mar 16 00:42 output.list
[2026-03-16 00:42:06] -rw-r--r--. 1 boinc boinc       620 Mar 16 00:42 runtime_log
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc   1136640 Mar 16 00:42 result.tar.gz
[2026-03-16 00:42:06] -rw-r--r--. 1 boinc boinc      9221 Mar 16 00:42 runtime_log.err
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc       662 Mar 16 00:42 GGIMDmrj8L9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmPbvLDmfWcQ0n.diag
[2026-03-16 00:42:06] -rw-r--r--. 1 boinc boinc     21214 Mar 16 00:42 stderr.txt
[2026-03-16 00:42:06] HITS file was successfully produced:
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc 202782567 Mar 16 00:40 shared/HITS.pool.root.1
[2026-03-16 00:42:06]  *** Contents of shared directory: ***
[2026-03-16 00:42:06] total 405792
[2026-03-16 00:42:06] -rw-r--r--. 2 boinc boinc 210984612 Mar 15 23:05 ATLAS.root_0
[2026-03-16 00:42:06] -rw-r--r--. 2 boinc boinc     15845 Mar 15 23:05 start_atlas.sh
[2026-03-16 00:42:06] -rw-r--r--. 2 boinc boinc    597517 Mar 15 23:05 input.tar.gz
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc 202782567 Mar 16 00:40 HITS.pool.root.1
[2026-03-16 00:42:06] -rw-------. 1 boinc boinc   1136640 Mar 16 00:42 result.tar.gz
00:42:08 (280467): run_atlas exited; CPU time 22165.125938
00:42:08 (280467): called boinc_finish(0)

</stderr_txt>
]]>

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