Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:46:49 (1136294): wrapper (7.7.26015): starting
01:46:49 (1136294): wrapper: running run_atlas (--nthreads 12)
[2026-03-16 01:46:49] Arguments: --nthreads 12
[2026-03-16 01:46:49] Threads: 12
[2026-03-16 01:46:49] Checking for CVMFS
[2026-03-16 01:46:49] No cvmfs_config command found, will try listing directly
[2026-03-16 01:46:49] CVMFS is ok
[2026-03-16 01:46:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-16 01:46:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-16 01:46:49] Further information can be found at the LHC@home message board.
[2026-03-16 01:46:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 01:46:49] Checking for apptainer binary...
[2026-03-16 01:46:49] which: no apptainer in ((null))
[2026-03-16 01:46:49] apptainer is not installed, using version from CVMFS
[2026-03-16 01:46:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 01:46:49] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot256/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut18.grid.cesnet.cz
[2026-03-16 01:46:49] apptainer works
[2026-03-16 01:46:50] Set ATHENA_PROC_NUMBER=12
[2026-03-16 01:46:50] Set ATHENA_CORE_NUMBER=12
[2026-03-16 01:46:50] Starting ATLAS job with PandaID=7056111747
[2026-03-16 01:46:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot256/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-16 02:20:27]  *** The last 200 lines of the pilot log: ***
[2026-03-16 02:20:27]  surl=/var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7056111747/log.48967094._010268.job.log.tgz.1
[2026-03-16 02:20:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/3c/log.48967094._010268.job.log.tgz.1
[2026-03-16 02:20:27]  workdir=None
[2026-03-16 02:20:27] ]
[2026-03-16 02:20:27] 2026-03-16 01:19:50,828 | INFO     | transferring file log.48967094._010268.job.log.tgz.1 from /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7056111747/log.48967094._010268.job.log.tgz.1 to /var/lib/
[2026-03-16 02:20:27] 2026-03-16 01:19:50,828 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7056111747/log.48967094._010268.job.log.tgz.1 /var/lib/boinc/var/slot256/slots/0/
[2026-03-16 02:20:27] 2026-03-16 01:19:50,841 | INFO     | adding to output.list: log.48967094._010268.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/3c/log.48967094._010268.job.log.tg
[2026-03-16 02:20:27] 2026-03-16 01:19:50,842 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-16 02:20:27] 2026-03-16 01:19:50,842 | INFO     | summary of transferred files:
[2026-03-16 02:20:27] 2026-03-16 01:19:50,842 | INFO     |  -- lfn=log.48967094._010268.job.log.tgz.1, status_code=0, status=transferred
[2026-03-16 02:20:27] 2026-03-16 01:19:50,842 | INFO     | stage-out finished correctly
[2026-03-16 02:20:27] 2026-03-16 01:19:52,050 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-16 02:20:27] 2026-03-16 01:19:52,075 | INFO     | time since job start (1970s) is within the limit (345600.0s)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,085 | INFO     | time since job start (1972s) is within the limit (345600.0s)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,253 | WARNING  | process 1146954 can no longer be monitored (due to stat problems) - aborting
[2026-03-16 02:20:27] 2026-03-16 01:19:54,253 | INFO     | using path: /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7056111747/memory_monitor_summary.json (trf name=prmon)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,254 | INFO     | using path: /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7056111747/memory_monitor_summary.json (trf name=prmon)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,254 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-16 02:20:27] 2026-03-16 01:19:54,254 | WARNING  | maxPSS not found in memory monitor output
[2026-03-16 02:20:27] 2026-03-16 01:19:54,254 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4039961 B
[2026-03-16 02:20:27] 2026-03-16 01:19:54,254 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16339 B
[2026-03-16 02:20:27] 2026-03-16 01:19:54,254 | INFO     | executing command: df -mP /var/lib/boinc/var/slot256/slots/0
[2026-03-16 02:20:27] 2026-03-16 01:19:54,268 | INFO     | sufficient remaining disk space (258151022592 B)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,269 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,269 | INFO     | size of work directory /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7056111747: 4321526 B (within 5033164800 B limit)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,269 | INFO     | pfn file=/var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7056111747/HITS.48967094._010268.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,269 | INFO     | total size of present files: 0 B (workdir size: 4321526 B)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,269 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7056111747/HITS.48967094._010268.pool.root.1 since it does not exist
[2026-03-16 02:20:27] 2026-03-16 01:19:54,616 | INFO     | number of running child processes to parent process 1146954: 1
[2026-03-16 02:20:27] 2026-03-16 01:19:54,617 | INFO     | maximum number of monitored processes: 6
[2026-03-16 02:20:27] 2026-03-16 01:19:54,944 | INFO     | job 7056111747 has state=finished
[2026-03-16 02:20:27] 2026-03-16 01:19:54,944 | INFO     | preparing for final server update for job 7056111747 in state='finished'
[2026-03-16 02:20:27] 2026-03-16 01:19:54,944 | INFO     | reading metadata from: /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7056111747/jobReport.json
[2026-03-16 02:20:27] 2026-03-16 01:19:54,946 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot256/slots/0/workernode_map.json
[2026-03-16 02:20:27] 2026-03-16 01:19:54,946 | INFO     | this job has now completed (state=finished)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,946 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,946 | INFO     | log transfer has been attempted: DONE
[2026-03-16 02:20:27] 2026-03-16 01:19:54,946 | INFO     | job 7056111747 has finished - writing final server update
[2026-03-16 02:20:27] 2026-03-16 01:19:54,946 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_17545/.job.ad'
[2026-03-16 02:20:27] 2026-03-16 01:19:54,946 | INFO     | total number of processed events: 400 (read)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,963 | INFO     | using path: /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7056111747/memory_monitor_summary.json (trf name=prmon)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,963 | INFO     | extracted standard info from prmon json
[2026-03-16 02:20:27] 2026-03-16 01:19:54,963 | INFO     | extracted standard memory fields from prmon json
[2026-03-16 02:20:27] 2026-03-16 01:19:54,963 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-16 02:20:27] 2026-03-16 01:19:54,964 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-16 02:20:27] 2026-03-16 01:19:54,964 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-16 02:20:27] 2026-03-16 01:19:54,964 | INFO     | fitting pss+swap vs Time
[2026-03-16 02:20:27] 2026-03-16 01:19:54,964 | INFO     | sum of square deviations: 4837300.0
[2026-03-16 02:20:27] 2026-03-16 01:19:54,964 | INFO     | sum of deviations: -171899159.0
[2026-03-16 02:20:27] 2026-03-16 01:19:54,964 | INFO     | mean x: 1773623079.0
[2026-03-16 02:20:27] 2026-03-16 01:19:54,964 | INFO     | mean y: 2806932.4
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | intersect: 63030594264.814896
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | chi2: 0.0028671194192265844
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | current memory leak: -35.54 B/s (using 25 data points, chi2=0.00)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | could have reported an average CPU frequency of 3604 MHz (5 samples)
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | ..............................
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | . Timing measurements:
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | . get job = 0 s
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | . initial setup = 4 s
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | . payload setup = 4 s
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | . stage-in = 0 s
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | . payload execution = 1948 s
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | . stage-out = 0 s
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | . log creation = 0 s
[2026-03-16 02:20:27] 2026-03-16 01:19:54,965 | INFO     | ..............................
[2026-03-16 02:20:27] 2026-03-16 01:19:55,165 | INFO     | 
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | job summary report
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | --------------------------------------------------
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | PanDA job id: 7056111747
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | task id: 48967094
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | errors: (none)
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | pilot state: finished 
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | transexitcode: 0
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | exeerrorcode: 0
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | exeerrordiag: 
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | exitcode: 0
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | exitmsg: OK
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | cpuconsumptiontime: 20903 s
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | nevents: 400
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | neventsw: 0
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | pid: 1146954
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | pgrp: 1146954
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | corecount: 12
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | event service: False
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | sizes: {0: 2280238, 11: 2280238, 1956: 2305181, 1958: 2314203, 1959: 2314259, 1962: 2314513}
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | --------------------------------------------------
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | 
[2026-03-16 02:20:27] 2026-03-16 01:19:55,166 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot256/slots/0
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,186 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-16 02:20:27] 2026-03-16 01:19:55,187 | INFO     | job 7056111747 has completed (purged errors)
[2026-03-16 02:20:27] 2026-03-16 01:19:55,187 | INFO     | overall cleanup function is called
[2026-03-16 02:20:27] 2026-03-16 01:19:56,193 | INFO     | --- collectZombieJob: --- 10, [1146954]
[2026-03-16 02:20:27] 2026-03-16 01:19:56,194 | INFO     | zombie collector waiting for pid 1146954
[2026-03-16 02:20:27] 2026-03-16 01:19:56,194 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-16 02:20:27] 2026-03-16 01:19:56,194 | INFO     | collected zombie processes
[2026-03-16 02:20:27] 2026-03-16 01:19:56,194 | INFO     | will attempt to kill all subprocesses of pid=1146954
[2026-03-16 02:20:27] 2026-03-16 01:19:56,514 | INFO     | process IDs to be killed: [1146954] (in reverse order)
[2026-03-16 02:20:27] 2026-03-16 01:19:56,661 | WARNING  | found no corresponding commands to process id(s)
[2026-03-16 02:20:27] 2026-03-16 01:19:56,661 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-16 02:20:27] 2026-03-16 01:19:56,683 | INFO     | did not find any defunct processes belonging to 1146954
[2026-03-16 02:20:27] 2026-03-16 01:19:56,701 | INFO     | did not find any defunct processes belonging to 1146954
[2026-03-16 02:20:27] 2026-03-16 01:19:56,701 | INFO     | ready for new job
[2026-03-16 02:20:27] 2026-03-16 01:19:56,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-16 02:20:27] 2026-03-16 01:19:56,702 | INFO     | **************************************
[2026-03-16 02:20:27] 2026-03-16 01:19:56,702 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-16 02:20:27] 2026-03-16 01:19:56,702 | INFO     | **************************************
[2026-03-16 02:20:27] 2026-03-16 01:19:56,702 | INFO     | 
[2026-03-16 02:20:27] 2026-03-16 01:19:56,707 | INFO     | architecture information:
[2026-03-16 02:20:27] 2026-03-16 01:19:56,708 | INFO     | executing command: cat /etc/os-release
[2026-03-16 02:20:27] 2026-03-16 01:19:56,720 | INFO     | cat /etc/os-release:
[2026-03-16 02:20:27] NAME="CentOS Linux"
[2026-03-16 02:20:27] VERSION="7 (Core)"
[2026-03-16 02:20:27] ID="centos"
[2026-03-16 02:20:27] ID_LIKE="rhel fedora"
[2026-03-16 02:20:27] VERSION_ID="7"
[2026-03-16 02:20:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-16 02:20:27] ANSI_COLOR="0;31"
[2026-03-16 02:20:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-16 02:20:27] HOME_URL="https://www.centos.org/"
[2026-03-16 02:20:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-16 02:20:27] 
[2026-03-16 02:20:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-16 02:20:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-16 02:20:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-16 02:20:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-16 02:20:27] 
[2026-03-16 02:20:27] 2026-03-16 01:19:56,720 | INFO     | **************************************
[2026-03-16 02:20:27] 2026-03-16 01:19:57,223 | INFO     | executing command: df -mP /var/lib/boinc/var/slot256/slots/0
[2026-03-16 02:20:27] 2026-03-16 01:19:57,238 | INFO     | sufficient remaining disk space (258153119744 B)
[2026-03-16 02:20:27] 2026-03-16 01:19:57,238 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-16 02:20:27] 2026-03-16 01:19:57,238 | INFO     | current server update state: UPDATING_FINAL
[2026-03-16 02:20:27] 2026-03-16 01:19:57,239 | INFO     | update_server=False
[2026-03-16 02:20:27] 2026-03-16 01:19:57,239 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-16 02:20:27] 2026-03-16 01:19:57,239 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-16 02:20:27] 2026-03-16 01:19:57,545 | INFO     | all payload control threads have been joined
[2026-03-16 02:20:27] 2026-03-16 01:19:57,742 | INFO     | all data control threads have been joined
[2026-03-16 02:20:27] 2026-03-16 01:19:58,104 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-16 02:20:27] 2026-03-16 01:19:58,125 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-16 02:20:27] 2026-03-16 01:19:58,125 | INFO     | aborting loop
[2026-03-16 02:20:27] 2026-03-16 01:19:58,244 | INFO     | [job] retrieve thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:19:58,551 | INFO     | [payload] control thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:19:58,592 | INFO     | [payload] validate_post thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:19:58,652 | INFO     | all job control threads have been joined
[2026-03-16 02:20:27] 2026-03-16 01:19:58,747 | INFO     | [data] control thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:19:58,914 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:19:59,131 | INFO     | [job] job monitor thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:19:59,244 | INFO     | [data] copytool_out thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:19:59,307 | INFO     | [job] validate thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:19:59,386 | INFO     | [payload] failed_post thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:19:59,471 | INFO     | [job] create_data_payload thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:19:59,499 | INFO     | [payload] validate_pre thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:19:59,546 | INFO     | [payload] execute_payloads thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:19:59,658 | INFO     | [job] control thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:19:59,674 | INFO     | [data] copytool_in thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:20:00,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-16 02:20:27] 2026-03-16 01:20:01,026 | INFO     | [job] queue monitor thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:20:02,108 | INFO     | [data] queue_monitor thread has finished
[2026-03-16 02:20:27] 2026-03-16 01:20:04,419 | INFO     | [monitor] cgroup control has ended
[2026-03-16 02:20:27] 2026-03-16 01:20:05,273 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23410312587072)>', '<ExcThread(monitor, started 23410070787840)>']
[2026-03-16 02:20:27] 2026-03-16 01:20:10,283 | INFO     | all workflow threads have been joined
[2026-03-16 02:20:27] 2026-03-16 01:20:10,283 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-16 02:20:27] 2026-03-16 01:20:10,284 | INFO     | traces error code: 0
[2026-03-16 02:20:27] 2026-03-16 01:20:10,284 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-16 02:20:27] 2026-03-16 01:20:27,602 | INFO     | PID=1141178 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-16 02:20:27] 2026-03-16 01:20:27,602 | INFO     | .. there are 11 such processes running
[2026-03-16 02:20:27] 2026-03-16 01:20:27,602 | INFO     | found 0 job(s) in 20 queues
[2026-03-16 02:20:27] 2026-03-16 01:20:27,602 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-16 02:20:27] 2026-03-16 01:20:27,602 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-16 02:20:27] 2026-03-16 01:20:27,602 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-16 02:20:27] 2026-03-16 01:20:27,602 | INFO     | [monitor] control thread has ended
[2026-03-16 02:20:27] 2026-03-16 01:20:27,737 [wrapper] ==== pilot stdout END ====
[2026-03-16 02:20:27] 2026-03-16 01:20:27,739 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-16 02:20:27] 2026-03-16 01:20:27,740 [wrapper] pilotpid: 1141178
[2026-03-16 02:20:27] 2026-03-16 01:20:27,741 [wrapper] Pilot exit status: 0
[2026-03-16 02:20:27] 2026-03-16 01:20:27,747 [wrapper] pandaids: 7056111747
[2026-03-16 02:20:27] 2026-03-16 01:20:27,845 [wrapper] cleanup supervisor_pilot 1211186 1141179
[2026-03-16 02:20:27] 2026-03-16 01:20:27,847 [wrapper] Test setup, not cleaning
[2026-03-16 02:20:27] 2026-03-16 01:20:27,849 [wrapper] apfmon messages muted
[2026-03-16 02:20:27] 2026-03-16 01:20:27,850 [wrapper] ==== wrapper stdout END ====
[2026-03-16 02:20:27] 2026-03-16 01:20:27,851 [wrapper] ==== wrapper stderr END ====
[2026-03-16 02:20:27]  *** Error codes and diagnostics ***
[2026-03-16 02:20:27]     "exeErrorCode": 0,
[2026-03-16 02:20:27]     "exeErrorDiag": "",
[2026-03-16 02:20:27]     "pilotErrorCode": 0,
[2026-03-16 02:20:27]     "pilotErrorDiag": "",
[2026-03-16 02:20:27]  *** Listing of results directory ***
[2026-03-16 02:20:27] total 417520
[2026-03-16 02:20:27] -rw-r--r--. 1 boinc boinc    585013 Mar 15 19:43 pilot3.tar.gz
[2026-03-16 02:20:27] -rwx------. 1 boinc boinc     36322 Mar 15 19:56 runpilot2-wrapper.sh
[2026-03-16 02:20:27] -rw-r--r--. 1 boinc boinc      5111 Mar 15 19:56 queuedata.json
[2026-03-16 02:20:27] -rw-r--r--. 1 boinc boinc       100 Mar 16 01:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-16 02:20:27] -rwxr-xr-x. 1 boinc boinc      7986 Mar 16 01:46 run_atlas
[2026-03-16 02:20:27] -rw-r--r--. 1 boinc boinc       105 Mar 16 01:46 job.xml
[2026-03-16 02:20:27] -rw-r--r--. 1 boinc boinc      6709 Mar 16 01:46 init_data.xml
[2026-03-16 02:20:27] -rw-r--r--. 2 boinc boinc 217901173 Mar 16 01:46 EVNT.48967092._000366.pool.root.1
[2026-03-16 02:20:27] -rw-r--r--. 2 boinc boinc     15845 Mar 16 01:46 start_atlas.sh
[2026-03-16 02:20:27] drwxrwx--x. 2 boinc boinc      4096 Mar 16 01:46 shared
[2026-03-16 02:20:27] -rw-r--r--. 2 boinc boinc    597543 Mar 16 01:46 input.tar.gz
[2026-03-16 02:20:27] -rw-r--r--. 1 boinc boinc         0 Mar 16 01:46 boinc_lockfile
[2026-03-16 02:20:27] -rw-r--r--. 1 boinc boinc      2599 Mar 16 01:46 pandaJob.out
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc   1006471 Mar 16 01:46 agis_schedconf.cvmfs.json
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc   1511579 Mar 16 01:46 agis_ddmendpoints.agis.ALL.json
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc       444 Mar 16 01:47 workernode_map.json
[2026-03-16 02:20:27] drwx------. 5 boinc boinc      4096 Mar 16 01:47 pilot3
[2026-03-16 02:20:27] -rw-r--r--. 1 boinc boinc       529 Mar 16 02:19 boinc_task_state.xml
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc 204366619 Mar 16 02:19 HITS.48967094._010268.pool.root.1
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc        95 Mar 16 02:19 pilot_heartbeat.json
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc      1024 Mar 16 02:19 memory_monitor_summary.json
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc    344017 Mar 16 02:19 log.48967094._010268.job.log.tgz.1
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc      6355 Mar 16 02:19 heartbeat.json
[2026-03-16 02:20:27] -rw-r--r--. 1 boinc boinc        27 Mar 16 02:20 wrapper_checkpoint.txt
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc       823 Mar 16 02:20 pilotlog.txt
[2026-03-16 02:20:27] -rw-r--r--. 1 boinc boinc      8192 Mar 16 02:20 boinc_mmap_file
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc    325834 Mar 16 02:20 log.48967094._010268.job.log.1
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc       357 Mar 16 02:20 output.list
[2026-03-16 02:20:27] -rw-r--r--. 1 boinc boinc       620 Mar 16 02:20 runtime_log
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc    686080 Mar 16 02:20 result.tar.gz
[2026-03-16 02:20:27] -rw-r--r--. 1 boinc boinc      9223 Mar 16 02:20 runtime_log.err
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc       659 Mar 16 02:20 BIRMDmyo5L9n9Rq4apOajLDm4fhM0noT9bVooX4SDmpSsLDmnNe7jn.diag
[2026-03-16 02:20:27] -rw-r--r--. 1 boinc boinc     22536 Mar 16 02:20 stderr.txt
[2026-03-16 02:20:27] HITS file was successfully produced:
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc 204366619 Mar 16 02:19 shared/HITS.pool.root.1
[2026-03-16 02:20:27]  *** Contents of shared directory: ***
[2026-03-16 02:20:27] total 413656
[2026-03-16 02:20:27] -rw-r--r--. 2 boinc boinc 217901173 Mar 16 01:46 ATLAS.root_0
[2026-03-16 02:20:27] -rw-r--r--. 2 boinc boinc     15845 Mar 16 01:46 start_atlas.sh
[2026-03-16 02:20:27] -rw-r--r--. 2 boinc boinc    597543 Mar 16 01:46 input.tar.gz
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc 204366619 Mar 16 02:19 HITS.pool.root.1
[2026-03-16 02:20:27] -rw-------. 1 boinc boinc    686080 Mar 16 02:20 result.tar.gz
02:20:29 (1136294): run_atlas exited; CPU time 20961.044847
02:20:29 (1136294): called boinc_finish(0)

</stderr_txt>
]]>

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