Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:40:00 (1877410): wrapper (7.7.26015): starting
17:40:00 (1877410): wrapper: running run_atlas (--nthreads 2)
[2026-03-15 17:40:00] Arguments: --nthreads 2
[2026-03-15 17:40:00] Threads: 2
[2026-03-15 17:40:00] Checking for CVMFS
[2026-03-15 17:40:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 17:40:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 17:40:03] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 17:40:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 17:40:03] 2.9.2.0 1877605 0 30028 157321 3 1 32665589 36864001 0 130560 0 0 0.000 1336 1176 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 17:40:03] CVMFS is ok
[2026-03-15 17:40:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 17:40:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 17:40:03] Further information can be found at the LHC@home message board.
[2026-03-15 17:40:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 17:40:03] Checking for apptainer binary...
[2026-03-15 17:40:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 17:40:03] Running /usr/bin/apptainer --version
[2026-03-15 17:40:03] apptainer version 1.4.1-1.1
[2026-03-15 17:40:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 17:40:03] thA334a
[2026-03-15 17:40:03] apptainer works
[2026-03-15 17:40:03] Set ATHENA_PROC_NUMBER=2
[2026-03-15 17:40:03] Set ATHENA_CORE_NUMBER=2
[2026-03-15 17:40:03] Starting ATLAS job with PandaID=7056016883
[2026-03-15 17:40:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 20:15:45]  *** The last 200 lines of the pilot log: ***
[2026-03-15 20:15:45] 2026-03-15 19:15:12,432 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 20:15:45] 2026-03-15 19:15:12,432 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 20:15:45] 2026-03-15 19:15:12,432 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 20:15:45] 2026-03-15 19:15:12,433 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 20:15:45] 2026-03-15 19:15:12,433 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 20:15:45] 2026-03-15 19:15:12,433 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 20:15:45] 2026-03-15 19:15:12,433 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 20:15:45] 2026-03-15 19:15:12,433 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 20:15:45] 2026-03-15 19:15:12,433 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 20:15:45] 2026-03-15 19:15:12,434 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 20:15:45] 2026-03-15 19:15:12,434 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 20:15:45] 2026-03-15 19:15:12,434 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 20:15:45] 2026-03-15 19:15:12,434 | INFO     | job 7056016883 has completed (purged errors)
[2026-03-15 20:15:45] 2026-03-15 19:15:12,434 | INFO     | overall cleanup function is called
[2026-03-15 20:15:45] 2026-03-15 19:15:13,443 | INFO     | --- collectZombieJob: --- 10, [1886075]
[2026-03-15 20:15:45] 2026-03-15 19:15:13,443 | INFO     | zombie collector waiting for pid 1886075
[2026-03-15 20:15:45] 2026-03-15 19:15:13,443 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 20:15:45] 2026-03-15 19:15:13,444 | INFO     | collected zombie processes
[2026-03-15 20:15:45] 2026-03-15 19:15:13,444 | INFO     | will attempt to kill all subprocesses of pid=1886075
[2026-03-15 20:15:45] 2026-03-15 19:15:13,473 | INFO     | process IDs to be killed: [1886075] (in reverse order)
[2026-03-15 20:15:45] 2026-03-15 19:15:13,493 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 20:15:45] 2026-03-15 19:15:13,493 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 20:15:45] 2026-03-15 19:15:13,494 | INFO     | did not find any defunct processes belonging to 1886075
[2026-03-15 20:15:45] 2026-03-15 19:15:13,495 | INFO     | did not find any defunct processes belonging to 1886075
[2026-03-15 20:15:45] 2026-03-15 19:15:13,495 | INFO     | ready for new job
[2026-03-15 20:15:45] 2026-03-15 19:15:13,495 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 20:15:45] 2026-03-15 19:15:13,495 | INFO     | **************************************
[2026-03-15 20:15:45] 2026-03-15 19:15:13,495 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 20:15:45] 2026-03-15 19:15:13,495 | INFO     | **************************************
[2026-03-15 20:15:45] 2026-03-15 19:15:13,495 | INFO     | 
[2026-03-15 20:15:45] 2026-03-15 19:15:13,496 | INFO     | architecture information:
[2026-03-15 20:15:45] 2026-03-15 19:15:13,496 | INFO     | executing command: cat /etc/os-release
[2026-03-15 20:15:45] 2026-03-15 19:15:13,504 | INFO     | cat /etc/os-release:
[2026-03-15 20:15:45] NAME="CentOS Linux"
[2026-03-15 20:15:45] VERSION="7 (Core)"
[2026-03-15 20:15:45] ID="centos"
[2026-03-15 20:15:45] ID_LIKE="rhel fedora"
[2026-03-15 20:15:45] VERSION_ID="7"
[2026-03-15 20:15:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 20:15:45] ANSI_COLOR="0;31"
[2026-03-15 20:15:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 20:15:45] HOME_URL="https://www.centos.org/"
[2026-03-15 20:15:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 20:15:45] 
[2026-03-15 20:15:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 20:15:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 20:15:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 20:15:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 20:15:45] 
[2026-03-15 20:15:45] 2026-03-15 19:15:13,504 | INFO     | **************************************
[2026-03-15 20:15:45] 2026-03-15 19:15:14,008 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 20:15:45] 2026-03-15 19:15:14,020 | INFO     | sufficient remaining disk space (492307480576 B)
[2026-03-15 20:15:45] 2026-03-15 19:15:14,020 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 20:15:45] 2026-03-15 19:15:14,020 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 20:15:45] 2026-03-15 19:15:14,020 | INFO     | update_server=False
[2026-03-15 20:15:45] 2026-03-15 19:15:14,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 20:15:45] 2026-03-15 19:15:14,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 20:15:45] 2026-03-15 19:15:14,021 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 20:15:45] 2026-03-15 19:15:14,037 | INFO     | all job control threads have been joined
[2026-03-15 20:15:45] 2026-03-15 19:15:14,037 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 20:15:45] 2026-03-15 19:15:14,037 | INFO     | aborting loop
[2026-03-15 20:15:45] 2026-03-15 19:15:14,197 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 20:15:45] 2026-03-15 19:15:14,305 | INFO     | all payload control threads have been joined
[2026-03-15 20:15:45] 2026-03-15 19:15:14,346 | INFO     | all data control threads have been joined
[2026-03-15 20:15:45] 2026-03-15 19:15:15,026 | INFO     | [job] queue monitor thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:15,027 | INFO     | [job] retrieve thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:15,039 | INFO     | [job] control thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:15,043 | INFO     | [job] job monitor thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:15,096 | INFO     | [payload] validate_post thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:15,311 | INFO     | [payload] control thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:15,352 | INFO     | [data] control thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:15,718 | INFO     | [payload] failed_post thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:16,204 | INFO     | [data] copytool_out thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:16,231 | INFO     | [job] validate thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:16,249 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:16,372 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:16,397 | INFO     | [data] copytool_in thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:16,408 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:18,028 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:24,199 | INFO     | job.realtimelogging is not enabled
[2026-03-15 20:15:45] 2026-03-15 19:15:25,205 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 20:15:45] 2026-03-15 19:15:38,117 | INFO     | [monitor] cgroup control has ended
[2026-03-15 20:15:45] 2026-03-15 19:15:38,671 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140395439916864)>', '<ExcThread(monitor, started 140394780137216)>']
[2026-03-15 20:15:45] 2026-03-15 19:15:43,690 | INFO     | all workflow threads have been joined
[2026-03-15 20:15:45] 2026-03-15 19:15:43,691 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 20:15:45] 2026-03-15 19:15:43,691 | INFO     | traces error code: 0
[2026-03-15 20:15:45] 2026-03-15 19:15:43,692 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 20:15:45] 2026-03-15 19:15:44,936 | INFO     | PID=1881663 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 20:15:45] 2026-03-15 19:15:44,936 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 20:15:45] 2026-03-15 19:15:44,936 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 20:15:45] 2026-03-15 19:15:44,937 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 20:15:45] 2026-03-15 19:15:44,937 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 20:15:45] 2026-03-15 19:15:44,937 | CRITICAL | thread 'MainThread' is not alive
[2026-03-15 20:15:45] 2026-03-15 19:15:44,937 | INFO     | [monitor] control thread has ended
[2026-03-15 20:15:45] 2026-03-15 19:15:44,975 [wrapper] ==== pilot stdout END ====
[2026-03-15 20:15:45] 2026-03-15 19:15:44,978 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 20:15:45] 2026-03-15 19:15:44,980 [wrapper] pilotpid: 1881663
[2026-03-15 20:15:45] 2026-03-15 19:15:44,982 [wrapper] Pilot exit status: 0
[2026-03-15 20:15:45] 2026-03-15 19:15:44,988 [wrapper] pandaids: 7056016883
[2026-03-15 20:15:45] 2026-03-15 19:15:45,000 [wrapper] cleanup supervisor_pilot 1891685 1881664
[2026-03-15 20:15:45] 2026-03-15 19:15:45,002 [wrapper] Test setup, not cleaning
[2026-03-15 20:15:45] 2026-03-15 19:15:45,004 [wrapper] apfmon messages muted
[2026-03-15 20:15:45] 2026-03-15 19:15:45,006 [wrapper] ==== wrapper stdout END ====
[2026-03-15 20:15:45] 2026-03-15 19:15:45,008 [wrapper] ==== wrapper stderr END ====
[2026-03-15 20:15:45]  *** Error codes and diagnostics ***
[2026-03-15 20:15:45]     "exeErrorCode": 0,
[2026-03-15 20:15:45]     "exeErrorDiag": "",
[2026-03-15 20:15:45]     "pilotErrorCode": 0,
[2026-03-15 20:15:45]     "pilotErrorDiag": "",
[2026-03-15 20:15:45]  *** Listing of results directory ***
[2026-03-15 20:15:45] total 428992
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc      5111 Mar 15 17:37 queuedata.json
[2026-03-15 20:15:45] -rwx------ 1 boinc boinc     36322 Mar 15 17:38 runpilot2-wrapper.sh
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc    585013 Mar 15 17:38 pilot3.tar.gz
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc       100 Mar 15 17:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 20:15:45] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 17:40 run_atlas
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc       105 Mar 15 17:40 job.xml
[2026-03-15 20:15:45] -rw-r--r-- 2 boinc boinc 221323301 Mar 15 17:40 EVNT.48967008._000574.pool.root.1
[2026-03-15 20:15:45] -rw-r--r-- 2 boinc boinc    597524 Mar 15 17:40 input.tar.gz
[2026-03-15 20:15:45] -rw-r--r-- 2 boinc boinc     15845 Mar 15 17:40 start_atlas.sh
[2026-03-15 20:15:45] drwxrwx--x 2 boinc boinc      4096 Mar 15 17:40 shared
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc         0 Mar 15 17:40 boinc_setup_complete
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc      6206 Mar 15 17:40 init_data.xml
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc         0 Mar 15 17:40 boinc_lockfile
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc      2565 Mar 15 17:40 pandaJob.out
[2026-03-15 20:15:45] -rw------- 1 boinc boinc   1006473 Mar 15 17:40 agis_schedconf.cvmfs.json
[2026-03-15 20:15:45] -rw------- 1 boinc boinc   1511579 Mar 15 17:40 agis_ddmendpoints.agis.ALL.json
[2026-03-15 20:15:45] -rw------- 1 boinc boinc       419 Mar 15 17:40 workernode_map.json
[2026-03-15 20:15:45] drwx------ 5 boinc boinc      4096 Mar 15 17:40 pilot3
[2026-03-15 20:15:45] -rw------- 1 boinc boinc 210797357 Mar 15 20:14 HITS.48967011._014937.pool.root.1
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc       529 Mar 15 20:14 boinc_task_state.xml
[2026-03-15 20:15:45] -rw------- 1 boinc boinc        95 Mar 15 20:14 pilot_heartbeat.json
[2026-03-15 20:15:45] -rw------- 1 boinc boinc      1011 Mar 15 20:15 memory_monitor_summary.json
[2026-03-15 20:15:45] -rw------- 1 boinc boinc    299429 Mar 15 20:15 log.48967011._014937.job.log.tgz.1
[2026-03-15 20:15:45] -rw------- 1 boinc boinc      6302 Mar 15 20:15 heartbeat.json
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc      8192 Mar 15 20:15 boinc_mmap_file
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc        27 Mar 15 20:15 wrapper_checkpoint.txt
[2026-03-15 20:15:45] -rw------- 1 boinc boinc       817 Mar 15 20:15 pilotlog.txt
[2026-03-15 20:15:45] -rw------- 1 boinc boinc   1325876 Mar 15 20:15 log.48967011._014937.job.log.1
[2026-03-15 20:15:45] -rw------- 1 boinc boinc       357 Mar 15 20:15 output.list
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc       620 Mar 15 20:15 runtime_log
[2026-03-15 20:15:45] -rw------- 1 boinc boinc   1638400 Mar 15 20:15 result.tar.gz
[2026-03-15 20:15:45] -rw------- 1 boinc boinc       658 Mar 15 20:15 uqeKDmze3L9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmwJvLDmJ8qUJo.diag
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc      8901 Mar 15 20:15 runtime_log.err
[2026-03-15 20:15:45] -rw-r--r-- 1 boinc boinc     12205 Mar 15 20:15 stderr.txt
[2026-03-15 20:15:45] HITS file was successfully produced:
[2026-03-15 20:15:45] -rw------- 1 boinc boinc 210797357 Mar 15 20:14 shared/HITS.pool.root.1
[2026-03-15 20:15:45]  *** Contents of shared directory: ***
[2026-03-15 20:15:45] total 424204
[2026-03-15 20:15:45] -rw-r--r-- 2 boinc boinc 221323301 Mar 15 17:40 ATLAS.root_0
[2026-03-15 20:15:45] -rw-r--r-- 2 boinc boinc    597524 Mar 15 17:40 input.tar.gz
[2026-03-15 20:15:45] -rw-r--r-- 2 boinc boinc     15845 Mar 15 17:40 start_atlas.sh
[2026-03-15 20:15:45] -rw------- 1 boinc boinc 210797357 Mar 15 20:14 HITS.pool.root.1
[2026-03-15 20:15:45] -rw------- 1 boinc boinc   1638400 Mar 15 20:15 result.tar.gz
20:15:46 (1877410): run_atlas exited; CPU time 17977.491821
20:15:46 (1877410): called boinc_finish(0)

</stderr_txt>
]]>

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