Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:16:17 (171630): wrapper (7.7.26015): starting
16:16:17 (171630): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 16:16:17] Arguments: --nthreads 4
[2026-03-15 16:16:17] Threads: 4
[2026-03-15 16:16:17] Checking for CVMFS
[2026-03-15 16:16:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 16:16:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 16:16:17] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 16:16:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 16:16:17] 2.9.2.0 158371 4 46524 157319 4 1 30777912 36864001 0 130560 0 32163 99.994 2674 21222 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 16:16:17] CVMFS is ok
[2026-03-15 16:16:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 16:16:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 16:16:17] Further information can be found at the LHC@home message board.
[2026-03-15 16:16:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 16:16:17] Checking for apptainer binary...
[2026-03-15 16:16:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 16:16:17] Running /usr/bin/apptainer --version
[2026-03-15 16:16:17] apptainer version 1.4.1-1.1
[2026-03-15 16:16:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 16:16:17] atlasA215b
[2026-03-15 16:16:17] apptainer works
[2026-03-15 16:16:17] Set ATHENA_PROC_NUMBER=4
[2026-03-15 16:16:17] Set ATHENA_CORE_NUMBER=4
[2026-03-15 16:16:17] Starting ATLAS job with PandaID=7046342054
[2026-03-15 16:16:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 17:25:40]  *** The last 200 lines of the pilot log: ***
[2026-03-15 17:25:40] 2026-03-15 16:25:09,574 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 17:25:40] 2026-03-15 16:25:09,574 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 17:25:40] 2026-03-15 16:25:09,574 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 17:25:40] 2026-03-15 16:25:09,574 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 17:25:40] 2026-03-15 16:25:09,574 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 17:25:40] 2026-03-15 16:25:09,574 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 17:25:40] 2026-03-15 16:25:09,574 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 17:25:40] 2026-03-15 16:25:09,574 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 17:25:40] 2026-03-15 16:25:09,574 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 17:25:40] 2026-03-15 16:25:09,574 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 17:25:40] 2026-03-15 16:25:09,574 | INFO     | job 7046342054 has completed (purged errors)
[2026-03-15 17:25:40] 2026-03-15 16:25:09,574 | INFO     | overall cleanup function is called
[2026-03-15 17:25:40] 2026-03-15 16:25:10,581 | INFO     | --- collectZombieJob: --- 10, [179936]
[2026-03-15 17:25:40] 2026-03-15 16:25:10,582 | INFO     | zombie collector waiting for pid 179936
[2026-03-15 17:25:40] 2026-03-15 16:25:10,582 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 17:25:40] 2026-03-15 16:25:10,582 | INFO     | collected zombie processes
[2026-03-15 17:25:40] 2026-03-15 16:25:10,582 | INFO     | will attempt to kill all subprocesses of pid=179936
[2026-03-15 17:25:40] 2026-03-15 16:25:10,624 | INFO     | process IDs to be killed: [179936] (in reverse order)
[2026-03-15 17:25:40] 2026-03-15 16:25:10,658 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 17:25:40] 2026-03-15 16:25:10,658 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 17:25:40] 2026-03-15 16:25:10,660 | INFO     | did not find any defunct processes belonging to 179936
[2026-03-15 17:25:40] 2026-03-15 16:25:10,661 | INFO     | did not find any defunct processes belonging to 179936
[2026-03-15 17:25:40] 2026-03-15 16:25:10,661 | INFO     | ready for new job
[2026-03-15 17:25:40] 2026-03-15 16:25:10,661 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 17:25:40] 2026-03-15 16:25:10,662 | INFO     | **************************************
[2026-03-15 17:25:40] 2026-03-15 16:25:10,662 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 17:25:40] 2026-03-15 16:25:10,662 | INFO     | **************************************
[2026-03-15 17:25:40] 2026-03-15 16:25:10,662 | INFO     | 
[2026-03-15 17:25:40] 2026-03-15 16:25:10,662 | INFO     | architecture information:
[2026-03-15 17:25:40] 2026-03-15 16:25:10,662 | INFO     | executing command: cat /etc/os-release
[2026-03-15 17:25:40] 2026-03-15 16:25:10,676 | INFO     | cat /etc/os-release:
[2026-03-15 17:25:40] NAME="CentOS Linux"
[2026-03-15 17:25:40] VERSION="7 (Core)"
[2026-03-15 17:25:40] ID="centos"
[2026-03-15 17:25:40] ID_LIKE="rhel fedora"
[2026-03-15 17:25:40] VERSION_ID="7"
[2026-03-15 17:25:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 17:25:40] ANSI_COLOR="0;31"
[2026-03-15 17:25:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 17:25:40] HOME_URL="https://www.centos.org/"
[2026-03-15 17:25:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 17:25:40] 
[2026-03-15 17:25:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 17:25:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 17:25:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 17:25:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 17:25:40] 
[2026-03-15 17:25:40] 2026-03-15 16:25:10,676 | INFO     | **************************************
[2026-03-15 17:25:40] 2026-03-15 16:25:11,180 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 17:25:40] 2026-03-15 16:25:11,197 | INFO     | sufficient remaining disk space (330337091584 B)
[2026-03-15 17:25:40] 2026-03-15 16:25:11,197 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 17:25:40] 2026-03-15 16:25:11,198 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 17:25:40] 2026-03-15 16:25:11,198 | INFO     | update_server=False
[2026-03-15 17:25:40] 2026-03-15 16:25:11,198 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 17:25:40] 2026-03-15 16:25:11,198 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 17:25:40] 2026-03-15 16:25:11,198 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-15 17:25:40] 2026-03-15 16:25:11,198 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 17:25:40] 2026-03-15 16:25:11,198 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 17:25:40] 2026-03-15 16:25:11,198 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 17:25:40] 2026-03-15 16:25:11,198 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 17:25:40] 2026-03-15 16:25:11,514 | WARNING  | process 179936 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 17:25:40] 2026-03-15 16:25:11,544 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 17:25:40] 2026-03-15 16:25:11,583 | INFO     | number of running child processes to parent process 179936: 1
[2026-03-15 17:25:40] 2026-03-15 16:25:11,583 | INFO     | maximum number of monitored processes: 6
[2026-03-15 17:25:40] 2026-03-15 16:25:11,583 | INFO     | aborting job monitoring since job object (job id=7046342054) has expired
[2026-03-15 17:25:40] 2026-03-15 16:25:11,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 17:25:40] 2026-03-15 16:25:11,583 | INFO     | will abort loop
[2026-03-15 17:25:40] 2026-03-15 16:25:11,881 | INFO     | all payload control threads have been joined
[2026-03-15 17:25:40] 2026-03-15 16:25:12,116 | INFO     | all data control threads have been joined
[2026-03-15 17:25:40] 2026-03-15 16:25:12,203 | INFO     | [job] retrieve thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:12,203 | INFO     | [job] queue monitor thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:12,586 | INFO     | [payload] validate_post thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:12,589 | INFO     | [job] job monitor thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:12,614 | INFO     | [job] validate thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:12,671 | INFO     | all job control threads have been joined
[2026-03-15 17:25:40] 2026-03-15 16:25:12,707 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:12,794 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:12,887 | INFO     | [payload] control thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:12,981 | INFO     | [data] copytool_in thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:13,122 | INFO     | [data] control thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:13,175 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:13,204 | INFO     | [data] copytool_out thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:13,357 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:13,676 | INFO     | [job] control thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:13,677 | INFO     | [payload] failed_post thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:14,213 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 17:25:40] 2026-03-15 16:25:18,218 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 17:25:40] 2026-03-15 16:25:34,520 | INFO     | [monitor] cgroup control has ended
[2026-03-15 17:25:40] 2026-03-15 16:25:35,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140361728448320)>', '<ExcThread(monitor, started 140360755943168)>']
[2026-03-15 17:25:40] 2026-03-15 16:25:36,322 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 17:25:40] 2026-03-15 16:25:36,322 | INFO     | [monitor] control thread has ended
[2026-03-15 17:25:40] 2026-03-15 16:25:40,528 | INFO     | all workflow threads have been joined
[2026-03-15 17:25:40] 2026-03-15 16:25:40,529 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 17:25:40] 2026-03-15 16:25:40,529 | INFO     | traces error code: 0
[2026-03-15 17:25:40] 2026-03-15 16:25:40,529 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 17:25:40] 2026-03-15 16:25:40,607 [wrapper] ==== pilot stdout END ====
[2026-03-15 17:25:40] 2026-03-15 16:25:40,611 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 17:25:40] 2026-03-15 16:25:40,615 [wrapper] pilotpid: 175424
[2026-03-15 17:25:40] 2026-03-15 16:25:40,619 [wrapper] Pilot exit status: 0
[2026-03-15 17:25:40] 2026-03-15 16:25:40,631 [wrapper] pandaids: 7046342054
[2026-03-15 17:25:40] 2026-03-15 16:25:40,653 [wrapper] cleanup supervisor_pilot  185077 175425
[2026-03-15 17:25:40] 2026-03-15 16:25:40,657 [wrapper] Test setup, not cleaning
[2026-03-15 17:25:40] 2026-03-15 16:25:40,661 [wrapper] apfmon messages muted
[2026-03-15 17:25:40] 2026-03-15 16:25:40,665 [wrapper] ==== wrapper stdout END ====
[2026-03-15 17:25:40] 2026-03-15 16:25:40,669 [wrapper] ==== wrapper stderr END ====
[2026-03-15 17:25:40]  *** Error codes and diagnostics ***
[2026-03-15 17:25:40]     "exeErrorCode": 0,
[2026-03-15 17:25:40]     "exeErrorDiag": "",
[2026-03-15 17:25:40]     "pilotErrorCode": 0,
[2026-03-15 17:25:40]     "pilotErrorDiag": "",
[2026-03-15 17:25:40]  *** Listing of results directory ***
[2026-03-15 17:25:40] total 612116
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc    585013 Mar 14 10:39 pilot3.tar.gz
[2026-03-15 17:25:40] -rwx------ 1 boinc boinc     36322 Mar 14 10:40 runpilot2-wrapper.sh
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc      5111 Mar 14 10:40 queuedata.json
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc       100 Mar 15 16:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 17:25:40] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 16:16 run_atlas
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc       105 Mar 15 16:16 job.xml
[2026-03-15 17:25:40] -rw-r--r-- 2 boinc boinc 436522712 Mar 15 16:16 EVNT.46701403._001820.pool.root.1
[2026-03-15 17:25:40] drwxrwx--x 2 boinc boinc      4096 Mar 15 16:16 shared
[2026-03-15 17:25:40] -rw-r--r-- 2 boinc boinc    597526 Mar 15 16:16 input.tar.gz
[2026-03-15 17:25:40] -rw-r--r-- 2 boinc boinc     15845 Mar 15 16:16 start_atlas.sh
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc         0 Mar 15 16:16 boinc_setup_complete
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc      6372 Mar 15 16:16 init_data.xml
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc         0 Mar 15 16:16 boinc_lockfile
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc      2564 Mar 15 16:16 pandaJob.out
[2026-03-15 17:25:40] -rw------- 1 boinc boinc   1006473 Mar 15 16:16 agis_schedconf.cvmfs.json
[2026-03-15 17:25:40] -rw------- 1 boinc boinc   1511579 Mar 15 16:16 agis_ddmendpoints.agis.ALL.json
[2026-03-15 17:25:40] -rw------- 1 boinc boinc       431 Mar 15 16:16 workernode_map.json
[2026-03-15 17:25:40] drwx------ 5 boinc boinc      4096 Mar 15 16:16 pilot3
[2026-03-15 17:25:40] -rw------- 1 boinc boinc        95 Mar 15 17:24 pilot_heartbeat.json
[2026-03-15 17:25:40] -rw------- 1 boinc boinc 184612204 Mar 15 17:24 HITS.48955010._040013.pool.root.1
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc       530 Mar 15 17:24 boinc_task_state.xml
[2026-03-15 17:25:40] -rw------- 1 boinc boinc      1017 Mar 15 17:25 memory_monitor_summary.json
[2026-03-15 17:25:40] -rw------- 1 boinc boinc    255881 Mar 15 17:25 log.48955010._040013.job.log.tgz.1
[2026-03-15 17:25:40] -rw------- 1 boinc boinc      6320 Mar 15 17:25 heartbeat.json
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc      8192 Mar 15 17:25 boinc_mmap_file
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc        27 Mar 15 17:25 wrapper_checkpoint.txt
[2026-03-15 17:25:40] -rw------- 1 boinc boinc      5074 Mar 15 17:25 pilotlog.txt
[2026-03-15 17:25:40] -rw------- 1 boinc boinc    613047 Mar 15 17:25 log.48955010._040013.job.log.1
[2026-03-15 17:25:40] -rw------- 1 boinc boinc       357 Mar 15 17:25 output.list
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc       620 Mar 15 17:25 runtime_log
[2026-03-15 17:25:40] -rw------- 1 boinc boinc    890880 Mar 15 17:25 result.tar.gz
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc      8916 Mar 15 17:25 runtime_log.err
[2026-03-15 17:25:40] -rw------- 1 boinc boinc       661 Mar 15 17:25 VsiLDmyeaL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmFRsLDmZeqRTm.diag
[2026-03-15 17:25:40] -rw-r--r-- 1 boinc boinc     12365 Mar 15 17:25 stderr.txt
[2026-03-15 17:25:40] HITS file was successfully produced:
[2026-03-15 17:25:40] -rw------- 1 boinc boinc 184612204 Mar 15 17:24 shared/HITS.pool.root.1
[2026-03-15 17:25:40]  *** Contents of shared directory: ***
[2026-03-15 17:25:40] total 608060
[2026-03-15 17:25:40] -rw-r--r-- 2 boinc boinc 436522712 Mar 15 16:16 ATLAS.root_0
[2026-03-15 17:25:40] -rw-r--r-- 2 boinc boinc    597526 Mar 15 16:16 input.tar.gz
[2026-03-15 17:25:40] -rw-r--r-- 2 boinc boinc     15845 Mar 15 16:16 start_atlas.sh
[2026-03-15 17:25:40] -rw------- 1 boinc boinc 184612204 Mar 15 17:24 HITS.pool.root.1
[2026-03-15 17:25:40] -rw------- 1 boinc boinc    890880 Mar 15 17:25 result.tar.gz
17:25:42 (171630): run_atlas exited; CPU time 15079.818325
17:25:42 (171630): called boinc_finish(0)

</stderr_txt>
]]>

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