Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:00:46 (26100): wrapper (7.7.26015): starting
08:00:46 (26100): wrapper: running run_atlas (--nthreads 8)
[2026-03-15 08:00:46] Arguments: --nthreads 8
[2026-03-15 08:00:46] Threads: 8
[2026-03-15 08:00:46] Checking for CVMFS
[2026-03-15 08:00:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 08:00:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 08:00:47] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 08:00:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 08:00:47] 2.11.2.0 26356 264514 154832 157312 2 4 9723669 18432001 18 130560 0 175160999 99.983 9979661 22939 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-15 08:00:47] CVMFS is ok
[2026-03-15 08:00:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 08:00:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 08:00:47] Further information can be found at the LHC@home message board.
[2026-03-15 08:00:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 08:00:47] Checking for apptainer binary...
[2026-03-15 08:00:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 08:00:47] Running /usr/bin/apptainer --version
[2026-03-15 08:00:47] apptainer version 1.3.2-1.el7
[2026-03-15 08:00:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 08:00:48] c-206-6.aglt2.org
[2026-03-15 08:00:48] apptainer works
[2026-03-15 08:00:48] Set ATHENA_PROC_NUMBER=8
[2026-03-15 08:00:48] Set ATHENA_CORE_NUMBER=8
[2026-03-15 08:00:48] Starting ATLAS job with PandaID=7055818063
[2026-03-15 08:00:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:40:02 (26100): BOINC client no longer exists - exiting
03:40:02 (26100): timer handler: client dead, exiting
03:48:17 (7913): wrapper (7.7.26015): starting
03:48:17 (7913): wrapper: running run_atlas (--nthreads 8)
[2026-03-16 03:48:17] Arguments: --nthreads 8
[2026-03-16 03:48:17] Threads: 8
[2026-03-16 03:48:17] This job has been restarted, cleaning up previous attempt
[2026-03-16 03:48:17] Checking for CVMFS
[2026-03-16 03:48:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-16 03:48:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-16 03:48:18] Running cvmfs_config stat atlas.cern.ch
[2026-03-16 03:48:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-16 03:48:18] 2.11.2.0 26356 265701 142684 157345 3 49 10605223 18432000 1 130560 0 175530618 99.980 10301912 23258 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-16 03:48:18] CVMFS is ok
[2026-03-16 03:48:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-16 03:48:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-16 03:48:18] Further information can be found at the LHC@home message board.
[2026-03-16 03:48:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 03:48:18] Checking for apptainer binary...
[2026-03-16 03:48:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-16 03:48:18] Running /usr/bin/apptainer --version
[2026-03-16 03:48:18] apptainer version 1.3.2-1.el7
[2026-03-16 03:48:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 03:48:19] c-206-6.aglt2.org
[2026-03-16 03:48:19] apptainer works
[2026-03-16 03:48:19] Set ATHENA_PROC_NUMBER=8
[2026-03-16 03:48:19] Set ATHENA_CORE_NUMBER=8
[2026-03-16 03:48:19] Starting ATLAS job with PandaID=7055818063
[2026-03-16 03:48:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 13:20:25]  *** The last 200 lines of the pilot log: ***
[2026-03-18 13:20:25] 2026-03-18 17:19:25,495 | INFO     | total number of processed events: 2050 (read)
[2026-03-18 13:20:25] 2026-03-18 17:19:25,498 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7055818063/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 13:20:25] 2026-03-18 17:19:25,499 | INFO     | extracted standard info from prmon json
[2026-03-18 13:20:25] 2026-03-18 17:19:25,499 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 13:20:25] 2026-03-18 17:19:25,499 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 13:20:25] 2026-03-18 17:19:25,540 | INFO     | fitting pss+swap vs Time
[2026-03-18 13:20:25] 2026-03-18 17:19:25,543 | INFO     | sum of square deviations: 12123104975892.59
[2026-03-18 13:20:25] 2026-03-18 17:19:25,858 | INFO     | sum of deviations: 19581703226053.457
[2026-03-18 13:20:25] 2026-03-18 17:19:25,858 | INFO     | mean x: 1773750824.3043606
[2026-03-18 13:20:25] 2026-03-18 17:19:25,863 | INFO     | mean y: 3014866.3296994697
[2026-03-18 13:20:25] 2026-03-18 17:19:25,863 | INFO     | intersect: -2862015363.7610354
[2026-03-18 13:20:25] 2026-03-18 17:19:25,867 | INFO     | chi2: 8.59224966917107
[2026-03-18 13:20:25] 2026-03-18 17:19:25,871 | INFO     | sum of square deviations: 12069605856596.836
[2026-03-18 13:20:25] 2026-03-18 17:19:26,123 | INFO     | monitor loop #14939: job 0:7055818063 is in state 'finished'
[2026-03-18 13:20:25] 2026-03-18 17:19:26,134 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-18 13:20:25] 2026-03-18 17:19:26,165 | INFO     | sum of deviations: 20803413426851.094
[2026-03-18 13:20:25] 2026-03-18 17:19:26,166 | INFO     | mean x: 1773750671.8055475
[2026-03-18 13:20:25] 2026-03-18 17:19:26,166 | INFO     | mean y: 3018348.599586899
[2026-03-18 13:20:25] 2026-03-18 17:19:26,166 | INFO     | intersect: -3054253693.2672443
[2026-03-18 13:20:25] 2026-03-18 17:19:26,171 | INFO     | chi2: 5.379660502107339
[2026-03-18 13:20:25] 2026-03-18 17:19:26,171 | INFO     | current chi2=5.379660502107339 (change=37.38938334846667 %)
[2026-03-18 13:20:25] 2026-03-18 17:19:26,175 | INFO     | sum of square deviations: 12016264368163.617
[2026-03-18 13:20:25] 2026-03-18 17:19:26,572 | INFO     | sum of deviations: 21472206030737.992
[2026-03-18 13:20:25] 2026-03-18 17:19:26,572 | INFO     | mean x: 1773750519.3067377
[2026-03-18 13:20:25] 2026-03-18 17:19:26,573 | INFO     | mean y: 3020259.9335106383
[2026-03-18 13:20:25] 2026-03-18 17:19:26,573 | INFO     | intersect: -3166545208.2323093
[2026-03-18 13:20:25] 2026-03-18 17:19:26,577 | INFO     | chi2: 4.090423339022206
[2026-03-18 13:20:25] 2026-03-18 17:19:26,578 | INFO     | current chi2=4.090423339022206 (change=23.965028324373044 %)
[2026-03-18 13:20:25] 2026-03-18 17:19:26,578 | INFO     | right removable region: 3383
[2026-03-18 13:20:25] 2026-03-18 17:19:26,582 | INFO     | sum of square deviations: 12069604398087.479
[2026-03-18 13:20:25] 2026-03-18 17:19:26,947 | INFO     | sum of deviations: 18557626735087.996
[2026-03-18 13:20:25] 2026-03-18 17:19:26,948 | INFO     | mean x: 1773750976.8052523
[2026-03-18 13:20:25] 2026-03-18 17:19:26,948 | INFO     | mean y: 3017784.4591324874
[2026-03-18 13:20:25] 2026-03-18 17:19:26,948 | INFO     | intersect: -2724213984.1119637
[2026-03-18 13:20:25] 2026-03-18 17:19:26,952 | INFO     | chi2: 6.2002380557002805
[2026-03-18 13:20:25] 2026-03-18 17:19:26,953 | INFO     | current chi2=6.2002380557002805 (change=27.839177230304536 %)
[2026-03-18 13:20:25] 2026-03-18 17:19:26,957 | INFO     | sum of square deviations: 12016261864604.047
[2026-03-18 13:20:25] 2026-03-18 17:19:27,281 | INFO     | sum of deviations: 18232450001210.33
[2026-03-18 13:20:25] 2026-03-18 17:19:27,281 | INFO     | mean x: 1773751129.3055556
[2026-03-18 13:20:25] 2026-03-18 17:19:27,282 | INFO     | mean y: 3018714.0750591015
[2026-03-18 13:20:25] 2026-03-18 17:19:27,282 | INFO     | intersect: -2688319835.637842
[2026-03-18 13:20:25] 2026-03-18 17:19:27,284 | INFO     | chi2: 6.069294208784545
[2026-03-18 13:20:25] 2026-03-18 17:19:27,285 | INFO     | current chi2=6.069294208784545 (change=2.1119164415848513 %)
[2026-03-18 13:20:25] 2026-03-18 17:19:27,285 | INFO     | left removable region: 20
[2026-03-18 13:20:25] 2026-03-18 17:19:27,288 | INFO     | sum of square deviations: 11793941597532.045
[2026-03-18 13:20:25] 2026-03-18 17:19:27,621 | INFO     | sum of deviations: 19683721571952.92
[2026-03-18 13:20:25] 2026-03-18 17:19:27,621 | INFO     | mean x: 1773751098.8088017
[2026-03-18 13:20:25] 2026-03-18 17:19:27,621 | INFO     | mean y: 3025891.617305977
[2026-03-18 13:20:25] 2026-03-18 17:19:27,622 | INFO     | intersect: -2957309504.1594534
[2026-03-18 13:20:25] 2026-03-18 17:19:27,626 | INFO     | chi2: 1.3205993789949042
[2026-03-18 13:20:25] 2026-03-18 17:19:27,626 | INFO     | current memory leak: 1.67 B/s (using 3363 data points, chi2=1.32)
[2026-03-18 13:20:25] 2026-03-18 17:19:27,629 | INFO     | could have reported an average CPU frequency of 1701 MHz (118 samples)
[2026-03-18 13:20:25] 2026-03-18 17:19:27,629 | INFO     | ..............................
[2026-03-18 13:20:25] 2026-03-18 17:19:27,629 | INFO     | . Timing measurements:
[2026-03-18 13:20:25] 2026-03-18 17:19:27,630 | INFO     | . get job = 0 s
[2026-03-18 13:20:25] 2026-03-18 17:19:27,630 | INFO     | . initial setup = 2 s
[2026-03-18 13:20:25] 2026-03-18 17:19:27,630 | INFO     | . payload setup = 7 s
[2026-03-18 13:20:25] 2026-03-18 17:19:27,630 | INFO     | . stage-in = 0 s
[2026-03-18 13:20:25] 2026-03-18 17:19:27,630 | INFO     | . payload execution = 207022 s
[2026-03-18 13:20:25] 2026-03-18 17:19:27,631 | INFO     | . stage-out = 6 s
[2026-03-18 13:20:25] 2026-03-18 17:19:27,631 | INFO     | . log creation = 1 s
[2026-03-18 13:20:25] 2026-03-18 17:19:27,631 | INFO     | ..............................
[2026-03-18 13:20:25] 2026-03-18 17:19:27,803 | INFO     | 
[2026-03-18 13:20:25] 2026-03-18 17:19:27,803 | INFO     | job summary report
[2026-03-18 13:20:25] 2026-03-18 17:19:27,804 | INFO     | --------------------------------------------------
[2026-03-18 13:20:25] 2026-03-18 17:19:27,804 | INFO     | PanDA job id: 7055818063
[2026-03-18 13:20:25] 2026-03-18 17:19:27,804 | INFO     | task id: 49145721
[2026-03-18 13:20:25] 2026-03-18 17:19:27,804 | INFO     | errors: (none)
[2026-03-18 13:20:25] 2026-03-18 17:19:27,805 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 13:20:25] 2026-03-18 17:19:27,805 | INFO     | pilot state: finished 
[2026-03-18 13:20:25] 2026-03-18 17:19:27,805 | INFO     | transexitcode: 0
[2026-03-18 13:20:25] 2026-03-18 17:19:27,806 | INFO     | exeerrorcode: 0
[2026-03-18 13:20:25] 2026-03-18 17:19:27,806 | INFO     | exeerrordiag: 
[2026-03-18 13:20:25] 2026-03-18 17:19:27,806 | INFO     | exitcode: 0
[2026-03-18 13:20:25] 2026-03-18 17:19:27,806 | INFO     | exitmsg: OK
[2026-03-18 13:20:25] 2026-03-18 17:19:27,807 | INFO     | cpuconsumptiontime: 1617589 s
[2026-03-18 13:20:25] 2026-03-18 17:19:27,807 | INFO     | nevents: 2050
[2026-03-18 13:20:25] 2026-03-18 17:19:27,807 | INFO     | neventsw: 0
[2026-03-18 13:20:25] 2026-03-18 17:19:27,808 | INFO     | pid: 26745
[2026-03-18 13:20:25] 2026-03-18 17:19:27,808 | INFO     | pgrp: 26745
[2026-03-18 13:20:25] 2026-03-18 17:19:27,808 | INFO     | corecount: 8
[2026-03-18 13:20:25] 2026-03-18 17:19:27,808 | INFO     | event service: False
[2026-03-18 13:20:25] 2026-03-18 17:19:27,809 | INFO     | sizes: {0: 2280920, 11: 2280920, 207033: 2403931, 207040: 2412985, 207042: 2413175}
[2026-03-18 13:20:25] 2026-03-18 17:19:27,809 | INFO     | --------------------------------------------------
[2026-03-18 13:20:25] 2026-03-18 17:19:27,809 | INFO     | 
[2026-03-18 13:20:25] 2026-03-18 17:19:27,809 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-03-18 13:20:25] 2026-03-18 17:19:27,837 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,837 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,838 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,838 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,838 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,838 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,838 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,839 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,839 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,839 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,839 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,839 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,840 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,840 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,840 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,840 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,841 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 13:20:25] 2026-03-18 17:19:27,841 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,841 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 13:20:25] 2026-03-18 17:19:27,842 | INFO     | job 7055818063 has completed (purged errors)
[2026-03-18 13:20:25] 2026-03-18 17:19:27,842 | INFO     | overall cleanup function is called
[2026-03-18 13:20:25] 2026-03-18 17:19:27,882 | INFO     | PID=19590 has CPU usage=32.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-18 13:20:25] 2026-03-18 17:19:27,882 | INFO     | .. there are 3 such processes running
[2026-03-18 13:20:25] 2026-03-18 17:19:28,865 | INFO     | --- collectZombieJob: --- 10, [26745]
[2026-03-18 13:20:25] 2026-03-18 17:19:28,865 | INFO     | zombie collector waiting for pid 26745
[2026-03-18 13:20:25] 2026-03-18 17:19:28,866 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 13:20:25] 2026-03-18 17:19:28,866 | INFO     | collected zombie processes
[2026-03-18 13:20:25] 2026-03-18 17:19:28,866 | INFO     | will attempt to kill all subprocesses of pid=26745
[2026-03-18 13:20:25] 2026-03-18 17:19:29,008 | INFO     | process IDs to be killed: [26745] (in reverse order)
[2026-03-18 13:20:25] 2026-03-18 17:19:29,052 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 13:20:25] 2026-03-18 17:19:29,052 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 13:20:25] 2026-03-18 17:19:29,055 | INFO     | did not find any defunct processes belonging to 26745
[2026-03-18 13:20:25] 2026-03-18 17:19:29,058 | INFO     | did not find any defunct processes belonging to 26745
[2026-03-18 13:20:25] 2026-03-18 17:19:29,058 | INFO     | ready for new job
[2026-03-18 13:20:25] 2026-03-18 17:19:29,058 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 13:20:25] 2026-03-18 17:19:29,067 | INFO     | **************************************
[2026-03-18 13:20:25] 2026-03-18 17:19:29,067 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 13:20:25] 2026-03-18 17:19:29,067 | INFO     | **************************************
[2026-03-18 13:20:25] 2026-03-18 17:19:29,067 | INFO     | 
[2026-03-18 13:20:25] 2026-03-18 17:19:29,068 | INFO     | architecture information:
[2026-03-18 13:20:25] 2026-03-18 17:19:29,068 | INFO     | executing command: cat /etc/os-release
[2026-03-18 13:20:25] 2026-03-18 17:19:29,183 | INFO     | cat /etc/os-release:
[2026-03-18 13:20:25] NAME="CentOS Linux"
[2026-03-18 13:20:25] VERSION="7 (Core)"
[2026-03-18 13:20:25] ID="centos"
[2026-03-18 13:20:25] ID_LIKE="rhel fedora"
[2026-03-18 13:20:25] VERSION_ID="7"
[2026-03-18 13:20:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 13:20:25] ANSI_COLOR="0;31"
[2026-03-18 13:20:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 13:20:25] HOME_URL="https://www.centos.org/"
[2026-03-18 13:20:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 13:20:25] 
[2026-03-18 13:20:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 13:20:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 13:20:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 13:20:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 13:20:25] 
[2026-03-18 13:20:25] 2026-03-18 17:19:29,183 | INFO     | **************************************
[2026-03-18 13:20:25] 2026-03-18 17:19:29,686 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-18 13:20:25] 2026-03-18 17:19:29,701 | INFO     | sufficient remaining disk space (25509756928 B)
[2026-03-18 13:20:25] 2026-03-18 17:19:29,702 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 13:20:25] 2026-03-18 17:19:29,702 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 13:20:25] 2026-03-18 17:19:29,702 | INFO     | update_server=False
[2026-03-18 13:20:25] 2026-03-18 17:19:29,702 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 13:20:25] 2026-03-18 17:19:29,702 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 13:20:25] 2026-03-18 17:19:29,703 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 13:20:25] 2026-03-18 17:19:29,703 | INFO     | aborting loop
[2026-03-18 13:20:25] 2026-03-18 17:19:30,134 | INFO     | all data control threads have been joined
[2026-03-18 13:20:25] 2026-03-18 17:19:30,417 | INFO     | all job control threads have been joined
[2026-03-18 13:20:25] 2026-03-18 17:19:30,705 | INFO     | [job] queue monitor thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:30,707 | INFO     | [job] retrieve thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:30,709 | INFO     | [job] job monitor thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:30,797 | INFO     | [data] copytool_in thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:30,814 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:30,934 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 13:20:25] 2026-03-18 17:19:31,080 | INFO     | all payload control threads have been joined
[2026-03-18 13:20:25] 2026-03-18 17:19:31,139 | INFO     | [data] control thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:31,280 | INFO     | [payload] validate_post thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:31,422 | INFO     | [job] control thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:31,505 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 13:20:25] 2026-03-18 17:19:31,824 | INFO     | [job] validate thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:31,824 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:31,942 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:32,031 | INFO     | [payload] failed_post thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:32,085 | INFO     | [payload] control thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:32,939 | INFO     | [data] copytool_out thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:35,514 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:19:40,684 | INFO     | job.realtimelogging is not enabled
[2026-03-18 13:20:25] 2026-03-18 17:19:41,690 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 13:20:25] 2026-03-18 17:20:00,070 | INFO     | PID=19590 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-18 13:20:25] 2026-03-18 17:20:00,070 | INFO     | .. there are 3 such processes running
[2026-03-18 13:20:25] 2026-03-18 17:20:00,071 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 13:20:25] 2026-03-18 17:20:00,071 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 13:20:25] 2026-03-18 17:20:00,071 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 13:20:25] 2026-03-18 17:20:19,071 | INFO     | [monitor] cgroup control has ended
[2026-03-18 13:20:25] 2026-03-18 17:20:19,792 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140304154621760)>', '<ExcThread(monitor, started 140303847626496)>']
[2026-03-18 13:20:25] 2026-03-18 17:20:20,175 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 13:20:25] 2026-03-18 17:20:20,175 | INFO     | [monitor] control thread has ended
[2026-03-18 13:20:25] 2026-03-18 17:20:24,812 | INFO     | all workflow threads have been joined
[2026-03-18 13:20:25] 2026-03-18 17:20:24,812 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 13:20:25] 2026-03-18 17:20:24,812 | INFO     | traces error code: 0
[2026-03-18 13:20:25] 2026-03-18 17:20:24,813 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 13:20:25] 2026-03-18 17:20:24,926 [wrapper] ==== pilot stdout END ====
[2026-03-18 13:20:25] 2026-03-18 17:20:24,929 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 13:20:25] 2026-03-18 17:20:24,932 [wrapper] pilotpid: 19590
[2026-03-18 13:20:25] 2026-03-18 17:20:24,934 [wrapper] Pilot exit status: 0
[2026-03-18 13:20:25] 2026-03-18 17:20:24,944 [wrapper] pandaids: 7055818063 7055818063
[2026-03-18 13:20:25] 2026-03-18 17:20:24,982 [wrapper] cleanup supervisor_pilot 24095 19592
[2026-03-18 13:20:25] 2026-03-18 17:20:24,985 [wrapper] Test setup, not cleaning
[2026-03-18 13:20:25] 2026-03-18 17:20:24,987 [wrapper] apfmon messages muted
[2026-03-18 13:20:25] 2026-03-18 17:20:24,990 [wrapper] ==== wrapper stdout END ====
[2026-03-18 13:20:25] 2026-03-18 17:20:24,992 [wrapper] ==== wrapper stderr END ====
[2026-03-18 13:20:25]  *** Error codes and diagnostics ***
[2026-03-18 13:20:25]     "exeErrorCode": 0,
[2026-03-18 13:20:25]     "exeErrorDiag": "",
[2026-03-18 13:20:25]     "pilotErrorCode": 0,
[2026-03-18 13:20:25]     "pilotErrorDiag": "",
[2026-03-18 13:20:25]  *** Listing of results directory ***
[2026-03-18 13:20:25] total 2505980
[2026-03-18 13:20:25] drwx------ 5 boincer umatlas       4096 Mar 10 12:00 pilot3
[2026-03-18 13:20:25] -rw-r--r-- 1 boincer umatlas     585013 Mar 15 07:37 pilot3.tar.gz
[2026-03-18 13:20:25] -rwx------ 1 boincer umatlas      36322 Mar 15 07:59 runpilot2-wrapper.sh
[2026-03-18 13:20:25] -rw-r--r-- 1 boincer umatlas       5111 Mar 15 07:59 queuedata.json
[2026-03-18 13:20:25] -rw-r--r-- 1 boincer umatlas        100 Mar 15 08:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 13:20:25] -rwxr-xr-x 1 boincer umatlas       7986 Mar 15 08:00 run_atlas
[2026-03-18 13:20:25] -rw-r--r-- 1 boincer umatlas        105 Mar 15 08:00 job.xml
[2026-03-18 13:20:25] -rw-r--r-- 3 boincer umatlas  335916238 Mar 15 08:00 EVNT.49145711._000001.pool.root.1
[2026-03-18 13:20:25] -rw-r--r-- 3 boincer umatlas  335916238 Mar 15 08:00 ATLAS.root_0
[2026-03-18 13:20:25] -rw-r--r-- 2 boincer umatlas      15845 Mar 15 08:00 start_atlas.sh
[2026-03-18 13:20:25] drwxrwx--x 2 boincer umatlas       4096 Mar 15 08:00 shared
[2026-03-18 13:20:25] -rw-r--r-- 2 boincer umatlas     597706 Mar 15 08:00 input.tar.gz
[2026-03-18 13:20:25] -rw-r--r-- 1 boincer umatlas          0 Mar 15 08:00 boinc_lockfile
[2026-03-18 13:20:25] -rw-r--r-- 1 boincer umatlas       2938 Mar 16 03:48 pandaJob.out
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas         57 Mar 16 03:48 setup.sh.local
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas    1006471 Mar 16 03:48 agis_schedconf.cvmfs.json
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas        434 Mar 16 03:48 workernode_map.json
[2026-03-18 13:20:25] -rw-r--r-- 1 boincer umatlas        534 Mar 18 12:59 boinc_task_state.xml
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas 1824405061 Mar 18 13:18 HITS.49145721._000004.pool.root.1
[2026-03-18 13:20:25] -rw-r--r-- 1 boincer umatlas       5953 Mar 18 13:18 init_data.xml
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas       1070 Mar 18 13:19 memory_monitor_summary.json
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas         96 Mar 18 13:19 pilot_heartbeat.json
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas    1511579 Mar 18 13:19 agis_ddmendpoints.agis.ALL.json
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas    4277848 Mar 18 13:19 log.49145721._000004.job.log.tgz.1
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas       7082 Mar 18 13:19 heartbeat.json
[2026-03-18 13:20:25] -rw-r--r-- 1 boincer umatlas       8192 Mar 18 13:20 boinc_mmap_file
[2026-03-18 13:20:25] -rw-r--r-- 1 boincer umatlas         31 Mar 18 13:20 wrapper_checkpoint.txt
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas       4889 Mar 18 13:20 pilotlog.txt
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas   28699995 Mar 18 13:20 log.49145721._000004.job.log.1
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas        353 Mar 18 13:20 output.list
[2026-03-18 13:20:25] -rw-r--r-- 1 boincer umatlas        620 Mar 18 13:20 runtime_log
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas   32993280 Mar 18 13:20 result.tar.gz
[2026-03-18 13:20:25] -rw-r--r-- 1 boincer umatlas       9423 Mar 18 13:20 runtime_log.err
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas        798 Mar 18 13:20 a6kMDmZJzL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmY2uLDm2qYwEo.diag
[2026-03-18 13:20:25] -rw-r--r-- 1 boincer umatlas       8965 Mar 18 13:20 stderr.txt
[2026-03-18 13:20:25] HITS file was successfully produced:
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas 1824405061 Mar 18 13:18 shared/HITS.pool.root.1
[2026-03-18 13:20:25]  *** Contents of shared directory: ***
[2026-03-18 13:20:25] total 2142520
[2026-03-18 13:20:25] -rw-r--r-- 3 boincer umatlas  335916238 Mar 15 08:00 ATLAS.root_0
[2026-03-18 13:20:25] -rw-r--r-- 2 boincer umatlas      15845 Mar 15 08:00 start_atlas.sh
[2026-03-18 13:20:25] -rw-r--r-- 2 boincer umatlas     597706 Mar 15 08:00 input.tar.gz
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas 1824405061 Mar 18 13:18 HITS.pool.root.1
[2026-03-18 13:20:25] -rw------- 1 boincer umatlas   32993280 Mar 18 13:20 result.tar.gz
13:20:26 (7913): run_atlas exited; CPU time 1616851.009376
13:20:26 (7913): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN