Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:47:41 (3404946): wrapper (7.7.26015): starting
02:47:41 (3404946): wrapper: running run_atlas (--nthreads 4)
[2026-03-16 02:47:41] Arguments: --nthreads 4
[2026-03-16 02:47:41] Threads: 4
[2026-03-16 02:47:41] Checking for CVMFS
[2026-03-16 02:47:41] No cvmfs_config command found, will try listing directly
[2026-03-16 02:47:41] CVMFS is ok
[2026-03-16 02:47:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-16 02:47:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-16 02:47:41] Further information can be found at the LHC@home message board.
[2026-03-16 02:47:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 02:47:41] Checking for apptainer binary...
[2026-03-16 02:47:41] which: no apptainer in ((null))
[2026-03-16 02:47:41] apptainer is not installed, using version from CVMFS
[2026-03-16 02:47:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 02:47:41] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot68/slots/11/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-03-16 02:47:41] apptainer works
[2026-03-16 02:47:41] Set ATHENA_PROC_NUMBER=4
[2026-03-16 02:47:41] Set ATHENA_CORE_NUMBER=4
[2026-03-16 02:47:41] Starting ATLAS job with PandaID=7055665098
[2026-03-16 02:47:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot68/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-16 04:04:26]  *** The last 200 lines of the pilot log: ***
[2026-03-16 04:04:26]  surl=/var/lib/boinc/var/slot68/slots/11/PanDA_Pilot-7055665098/log.48967094._009444.job.log.tgz.1
[2026-03-16 04:04:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/ff/log.48967094._009444.job.log.tgz.1
[2026-03-16 04:04:26]  workdir=None
[2026-03-16 04:04:26] ]
[2026-03-16 04:04:26] 2026-03-16 03:03:49,160 | INFO     | transferring file log.48967094._009444.job.log.tgz.1 from /var/lib/boinc/var/slot68/slots/11/PanDA_Pilot-7055665098/log.48967094._009444.job.log.tgz.1 to /var/lib/
[2026-03-16 04:04:26] 2026-03-16 03:03:49,160 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot68/slots/11/PanDA_Pilot-7055665098/log.48967094._009444.job.log.tgz.1 /var/lib/boinc/var/slot68/slots/11/
[2026-03-16 04:04:26] 2026-03-16 03:03:49,175 | INFO     | adding to output.list: log.48967094._009444.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/ff/log.48967094._009444.job.log.tg
[2026-03-16 04:04:26] 2026-03-16 03:03:49,175 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-16 04:04:26] 2026-03-16 03:03:49,175 | INFO     | summary of transferred files:
[2026-03-16 04:04:26] 2026-03-16 03:03:49,175 | INFO     |  -- lfn=log.48967094._009444.job.log.tgz.1, status_code=0, status=transferred
[2026-03-16 04:04:26] 2026-03-16 03:03:49,175 | INFO     | stage-out finished correctly
[2026-03-16 04:04:26] 2026-03-16 03:03:50,273 | INFO     | time since job start (4558s) is within the limit (345600.0s)
[2026-03-16 04:04:26] 2026-03-16 03:03:51,745 | INFO     | PID=3409868 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-16 04:04:26] 2026-03-16 03:03:51,745 | INFO     | .. there are 25 such processes running
[2026-03-16 04:04:26] 2026-03-16 03:03:51,881 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-16 04:04:26] 2026-03-16 03:03:52,746 | INFO     | time since job start (4560s) is within the limit (345600.0s)
[2026-03-16 04:04:26] 2026-03-16 03:03:52,854 | INFO     | job 7055665098 has state=finished
[2026-03-16 04:04:26] 2026-03-16 03:03:52,854 | INFO     | preparing for final server update for job 7055665098 in state='finished'
[2026-03-16 04:04:26] 2026-03-16 03:03:53,406 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-16 04:04:26] 2026-03-16 03:03:53,407 | INFO     | reading metadata from: /var/lib/boinc/var/slot68/slots/11/PanDA_Pilot-7055665098/jobReport.json
[2026-03-16 04:04:26] 2026-03-16 03:03:53,408 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot68/slots/11/workernode_map.json
[2026-03-16 04:04:26] 2026-03-16 03:03:53,409 | INFO     | this job has now completed (state=finished)
[2026-03-16 04:04:26] 2026-03-16 03:03:53,409 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-16 04:04:26] 2026-03-16 03:03:53,409 | INFO     | log transfer has been attempted: DONE
[2026-03-16 04:04:26] 2026-03-16 03:03:53,409 | INFO     | job 7055665098 has finished - writing final server update
[2026-03-16 04:04:26] 2026-03-16 03:03:53,409 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1041987/.job.ad'
[2026-03-16 04:04:26] 2026-03-16 03:03:53,409 | INFO     | total number of processed events: 400 (read)
[2026-03-16 04:04:26] 2026-03-16 03:03:53,427 | INFO     | using path: /var/lib/boinc/var/slot68/slots/11/PanDA_Pilot-7055665098/memory_monitor_summary.json (trf name=prmon)
[2026-03-16 04:04:26] 2026-03-16 03:03:53,427 | INFO     | extracted standard info from prmon json
[2026-03-16 04:04:26] 2026-03-16 03:03:53,427 | INFO     | extracted standard memory fields from prmon json
[2026-03-16 04:04:26] 2026-03-16 03:03:53,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-16 04:04:26] 2026-03-16 03:03:53,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-16 04:04:26] 2026-03-16 03:03:53,427 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-16 04:04:26] 2026-03-16 03:03:53,428 | INFO     | fitting pss+swap vs Time
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | sum of square deviations: 97479037.0
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | sum of deviations: -1357567261.0
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | mean x: 1773628040.5
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | mean y: 2344678.617647059
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | intersect: 24703238686.981537
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | chi2: 0.0019218960579857874
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | current memory leak: -13.93 B/s (using 68 data points, chi2=0.00)
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | could have reported an average CPU frequency of 3621 MHz (6 samples)
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | ..............................
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | . Timing measurements:
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | . get job = 0 s
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | . initial setup = 4 s
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | . payload setup = 4 s
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | . stage-in = 0 s
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | . payload execution = 4535 s
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | . stage-out = 0 s
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | . log creation = 0 s
[2026-03-16 04:04:26] 2026-03-16 03:03:53,429 | INFO     | ..............................
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | 
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | job summary report
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | --------------------------------------------------
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | PanDA job id: 7055665098
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | task id: 48967094
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | errors: (none)
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | pilot state: finished 
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | transexitcode: 0
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | exeerrorcode: 0
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | exeerrordiag: 
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | exitcode: 0
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | exitmsg: OK
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | cpuconsumptiontime: 17474 s
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | nevents: 400
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | neventsw: 0
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | pid: 3415756
[2026-03-16 04:04:26] 2026-03-16 03:03:53,478 | INFO     | pgrp: 3415756
[2026-03-16 04:04:26] 2026-03-16 03:03:53,479 | INFO     | corecount: 4
[2026-03-16 04:04:26] 2026-03-16 03:03:53,479 | INFO     | event service: False
[2026-03-16 04:04:26] 2026-03-16 03:03:53,479 | INFO     | sizes: {0: 2280238, 10: 2280238, 4543: 2306430, 4545: 2315452, 4548: 2315508, 4549: 2315702}
[2026-03-16 04:04:26] 2026-03-16 03:03:53,479 | INFO     | --------------------------------------------------
[2026-03-16 04:04:26] 2026-03-16 03:03:53,479 | INFO     | 
[2026-03-16 04:04:26] 2026-03-16 03:03:53,479 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot68/slots/11
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-16 04:04:26] 2026-03-16 03:03:53,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,496 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-16 04:04:26] 2026-03-16 03:03:53,496 | INFO     | job 7055665098 has completed (purged errors)
[2026-03-16 04:04:26] 2026-03-16 03:03:53,496 | INFO     | overall cleanup function is called
[2026-03-16 04:04:26] 2026-03-16 03:03:54,040 | WARNING  | process 3415756 can no longer be monitored (due to stat problems) - aborting
[2026-03-16 04:04:26] 2026-03-16 03:03:54,314 | INFO     | using path: /var/lib/boinc/var/slot68/slots/11/memory_monitor_summary.json (trf name=prmon)
[2026-03-16 04:04:26] 2026-03-16 03:03:54,315 | INFO     | using path: /var/lib/boinc/var/slot68/slots/11/memory_monitor_summary.json (trf name=prmon)
[2026-03-16 04:04:26] 2026-03-16 03:03:54,315 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-16 04:04:26] 2026-03-16 03:03:54,315 | WARNING  | maxPSS not found in memory monitor output
[2026-03-16 04:04:26] 2026-03-16 03:03:54,315 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot68/slots/11/PanDA_Pilot-7055665098/payload.stdout) since it has not been created yet
[2026-03-16 04:04:26] 2026-03-16 03:03:54,315 | INFO     | executing command: df -mP /var/lib/boinc/var/slot68/slots/11
[2026-03-16 04:04:26] 2026-03-16 03:03:54,328 | INFO     | sufficient remaining disk space (246917627904 B)
[2026-03-16 04:04:26] 2026-03-16 03:03:54,328 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-16 04:04:26] 2026-03-16 03:03:54,328 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot68/slots/11/PanDA_Pilot-7055665098/HITS.48967094._009444.pool.root.1 since it does not exist
[2026-03-16 04:04:26] 2026-03-16 03:03:54,499 | INFO     | --- collectZombieJob: --- 10, [3415756]
[2026-03-16 04:04:26] 2026-03-16 03:03:54,500 | INFO     | zombie collector waiting for pid 3415756
[2026-03-16 04:04:26] 2026-03-16 03:03:54,500 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-16 04:04:26] 2026-03-16 03:03:54,500 | INFO     | collected zombie processes
[2026-03-16 04:04:26] 2026-03-16 03:03:54,500 | INFO     | will attempt to kill all subprocesses of pid=3415756
[2026-03-16 04:04:26] 2026-03-16 03:03:54,995 | INFO     | number of running child processes to parent process 3415756: 1
[2026-03-16 04:04:26] 2026-03-16 03:03:54,995 | INFO     | maximum number of monitored processes: 6
[2026-03-16 04:04:26] 2026-03-16 03:03:54,996 | INFO     | aborting job monitoring since job object (job id=7055665098) has expired
[2026-03-16 04:04:26] 2026-03-16 03:03:55,072 | INFO     | process IDs to be killed: [3415756] (in reverse order)
[2026-03-16 04:04:26] 2026-03-16 03:03:55,241 | WARNING  | found no corresponding commands to process id(s)
[2026-03-16 04:04:26] 2026-03-16 03:03:55,241 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-16 04:04:26] 2026-03-16 03:03:55,268 | INFO     | did not find any defunct processes belonging to 3415756
[2026-03-16 04:04:26] 2026-03-16 03:03:55,292 | INFO     | did not find any defunct processes belonging to 3415756
[2026-03-16 04:04:26] 2026-03-16 03:03:55,292 | INFO     | ready for new job
[2026-03-16 04:04:26] 2026-03-16 03:03:55,293 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-16 04:04:26] 2026-03-16 03:03:55,294 | INFO     | **************************************
[2026-03-16 04:04:26] 2026-03-16 03:03:55,294 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-16 04:04:26] 2026-03-16 03:03:55,294 | INFO     | **************************************
[2026-03-16 04:04:26] 2026-03-16 03:03:55,294 | INFO     | 
[2026-03-16 04:04:26] 2026-03-16 03:03:55,299 | INFO     | architecture information:
[2026-03-16 04:04:26] 2026-03-16 03:03:55,299 | INFO     | executing command: cat /etc/os-release
[2026-03-16 04:04:26] 2026-03-16 03:03:55,312 | INFO     | cat /etc/os-release:
[2026-03-16 04:04:26] NAME="CentOS Linux"
[2026-03-16 04:04:26] VERSION="7 (Core)"
[2026-03-16 04:04:26] ID="centos"
[2026-03-16 04:04:26] ID_LIKE="rhel fedora"
[2026-03-16 04:04:26] VERSION_ID="7"
[2026-03-16 04:04:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-16 04:04:26] ANSI_COLOR="0;31"
[2026-03-16 04:04:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-16 04:04:26] HOME_URL="https://www.centos.org/"
[2026-03-16 04:04:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-16 04:04:26] 
[2026-03-16 04:04:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-16 04:04:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-16 04:04:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-16 04:04:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-16 04:04:26] 
[2026-03-16 04:04:26] 2026-03-16 03:03:55,312 | INFO     | **************************************
[2026-03-16 04:04:26] 2026-03-16 03:03:55,815 | INFO     | executing command: df -mP /var/lib/boinc/var/slot68/slots/11
[2026-03-16 04:04:26] 2026-03-16 03:03:55,828 | INFO     | sufficient remaining disk space (246914482176 B)
[2026-03-16 04:04:26] 2026-03-16 03:03:55,828 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-16 04:04:26] 2026-03-16 03:03:55,828 | INFO     | current server update state: UPDATING_FINAL
[2026-03-16 04:04:26] 2026-03-16 03:03:55,828 | INFO     | update_server=False
[2026-03-16 04:04:26] 2026-03-16 03:03:55,828 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-16 04:04:26] 2026-03-16 03:03:55,829 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-16 04:04:26] 2026-03-16 03:03:55,829 | INFO     | will abort loop
[2026-03-16 04:04:26] 2026-03-16 03:03:55,868 | INFO     | all data control threads have been joined
[2026-03-16 04:04:26] 2026-03-16 03:03:56,356 | INFO     | all payload control threads have been joined
[2026-03-16 04:04:26] 2026-03-16 03:03:56,657 | INFO     | all job control threads have been joined
[2026-03-16 04:04:26] 2026-03-16 03:03:56,834 | INFO     | [job] retrieve thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:56,834 | INFO     | [job] job monitor thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:56,874 | INFO     | [data] control thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:57,180 | INFO     | [job] validate thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:57,232 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-16 04:04:26] 2026-03-16 03:03:57,269 | INFO     | [payload] failed_post thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:57,281 | INFO     | [payload] execute_payloads thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:57,346 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:57,362 | INFO     | [payload] control thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:57,405 | INFO     | [job] create_data_payload thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:57,427 | INFO     | [payload] validate_pre thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:57,643 | INFO     | [data] copytool_in thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:57,662 | INFO     | [job] control thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:57,931 | INFO     | [payload] validate_post thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:57,939 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-16 04:04:26] 2026-03-16 03:03:58,303 | INFO     | [monitor] cgroup control has ended
[2026-03-16 04:04:26] 2026-03-16 03:03:58,488 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-16 04:04:26] 2026-03-16 03:03:59,238 | INFO     | [data] copytool_out thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:03:59,493 | INFO     | [job] queue monitor thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:04:01,945 | INFO     | [data] queue_monitor thread has finished
[2026-03-16 04:04:26] 2026-03-16 03:04:03,660 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23170679695168)>', '<ExcThread(monitor, started 23170441819904)>']
[2026-03-16 04:04:26] 2026-03-16 03:04:08,673 | INFO     | all workflow threads have been joined
[2026-03-16 04:04:26] 2026-03-16 03:04:08,674 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-16 04:04:26] 2026-03-16 03:04:08,674 | INFO     | traces error code: 0
[2026-03-16 04:04:26] 2026-03-16 03:04:08,674 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-16 04:04:26] 2026-03-16 03:04:26,294 | INFO     | PID=3409868 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-16 04:04:26] 2026-03-16 03:04:26,294 | INFO     | .. there are 25 such processes running
[2026-03-16 04:04:26] 2026-03-16 03:04:26,294 | INFO     | found 0 job(s) in 20 queues
[2026-03-16 04:04:26] 2026-03-16 03:04:26,294 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-16 04:04:26] 2026-03-16 03:04:26,294 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-16 04:04:26] 2026-03-16 03:04:26,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-16 04:04:26] 2026-03-16 03:04:26,294 | INFO     | [monitor] control thread has ended
[2026-03-16 04:04:26] 2026-03-16 03:04:26,396 [wrapper] ==== pilot stdout END ====
[2026-03-16 04:04:26] 2026-03-16 03:04:26,398 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-16 04:04:26] 2026-03-16 03:04:26,400 [wrapper] pilotpid: 3409868
[2026-03-16 04:04:26] 2026-03-16 03:04:26,402 [wrapper] Pilot exit status: 0
[2026-03-16 04:04:26] 2026-03-16 03:04:26,410 [wrapper] pandaids: 7055665098
[2026-03-16 04:04:26] 2026-03-16 03:04:26,505 [wrapper] cleanup supervisor_pilot 3726825 3409869
[2026-03-16 04:04:26] 2026-03-16 03:04:26,508 [wrapper] Test setup, not cleaning
[2026-03-16 04:04:26] 2026-03-16 03:04:26,511 [wrapper] apfmon messages muted
[2026-03-16 04:04:26] 2026-03-16 03:04:26,512 [wrapper] ==== wrapper stdout END ====
[2026-03-16 04:04:26] 2026-03-16 03:04:26,514 [wrapper] ==== wrapper stderr END ====
[2026-03-16 04:04:26]  *** Error codes and diagnostics ***
[2026-03-16 04:04:26]     "exeErrorCode": 0,
[2026-03-16 04:04:26]     "exeErrorDiag": "",
[2026-03-16 04:04:26]     "pilotErrorCode": 0,
[2026-03-16 04:04:26]     "pilotErrorDiag": "",
[2026-03-16 04:04:26]  *** Listing of results directory ***
[2026-03-16 04:04:26] total 417408
[2026-03-16 04:04:26] -rw-r--r--. 1 boinc boinc    585013 Mar 15 08:54 pilot3.tar.gz
[2026-03-16 04:04:26] -rwx------. 1 boinc boinc     36322 Mar 15 08:55 runpilot2-wrapper.sh
[2026-03-16 04:04:26] -rw-r--r--. 1 boinc boinc      5111 Mar 15 08:56 queuedata.json
[2026-03-16 04:04:26] -rw-r--r--. 1 boinc boinc       100 Mar 16 02:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-16 04:04:26] -rwxr-xr-x. 1 boinc boinc      7986 Mar 16 02:47 run_atlas
[2026-03-16 04:04:26] -rw-r--r--. 1 boinc boinc       105 Mar 16 02:47 job.xml
[2026-03-16 04:04:26] -rw-r--r--. 1 boinc boinc      6709 Mar 16 02:47 init_data.xml
[2026-03-16 04:04:26] -rw-r--r--. 2 boinc boinc 216490209 Mar 16 02:47 EVNT.48967092._000393.pool.root.1
[2026-03-16 04:04:26] -rw-r--r--. 2 boinc boinc     15845 Mar 16 02:47 start_atlas.sh
[2026-03-16 04:04:26] drwxrwx--x. 2 boinc boinc      4096 Mar 16 02:47 shared
[2026-03-16 04:04:26] -rw-r--r--. 2 boinc boinc    597532 Mar 16 02:47 input.tar.gz
[2026-03-16 04:04:26] -rw-r--r--. 1 boinc boinc         0 Mar 16 02:47 boinc_lockfile
[2026-03-16 04:04:26] -rw-r--r--. 1 boinc boinc      2599 Mar 16 02:47 pandaJob.out
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc   1006471 Mar 16 02:47 agis_schedconf.cvmfs.json
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc   1511579 Mar 16 02:47 agis_ddmendpoints.agis.ALL.json
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc       444 Mar 16 02:47 workernode_map.json
[2026-03-16 04:04:26] drwx------. 5 boinc boinc      4096 Mar 16 02:47 pilot3
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc 205108454 Mar 16 04:03 HITS.48967094._009444.pool.root.1
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc        95 Mar 16 04:03 pilot_heartbeat.json
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc      1024 Mar 16 04:03 memory_monitor_summary.json
[2026-03-16 04:04:26] -rw-r--r--. 1 boinc boinc       529 Mar 16 04:03 boinc_task_state.xml
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc    274322 Mar 16 04:03 log.48967094._009444.job.log.tgz.1
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc      6350 Mar 16 04:03 heartbeat.json
[2026-03-16 04:04:26] -rw-r--r--. 1 boinc boinc        27 Mar 16 04:04 wrapper_checkpoint.txt
[2026-03-16 04:04:26] -rw-r--r--. 1 boinc boinc      8192 Mar 16 04:04 boinc_mmap_file
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc       823 Mar 16 04:04 pilotlog.txt
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc    674596 Mar 16 04:04 log.48967094._009444.job.log.1
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc       357 Mar 16 04:04 output.list
[2026-03-16 04:04:26] -rw-r--r--. 1 boinc boinc       620 Mar 16 04:04 runtime_log
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc    962560 Mar 16 04:04 result.tar.gz
[2026-03-16 04:04:26] -rw-r--r--. 1 boinc boinc      9221 Mar 16 04:04 runtime_log.err
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc       661 Mar 16 04:04 4nhNDm3UvL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmMwuLDmmxVfln.diag
[2026-03-16 04:04:26] -rw-r--r--. 1 boinc boinc     21915 Mar 16 04:04 stderr.txt
[2026-03-16 04:04:26] HITS file was successfully produced:
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc 205108454 Mar 16 04:03 shared/HITS.pool.root.1
[2026-03-16 04:04:26]  *** Contents of shared directory: ***
[2026-03-16 04:04:26] total 413272
[2026-03-16 04:04:26] -rw-r--r--. 2 boinc boinc 216490209 Mar 16 02:47 ATLAS.root_0
[2026-03-16 04:04:26] -rw-r--r--. 2 boinc boinc     15845 Mar 16 02:47 start_atlas.sh
[2026-03-16 04:04:26] -rw-r--r--. 2 boinc boinc    597532 Mar 16 02:47 input.tar.gz
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc 205108454 Mar 16 04:03 HITS.pool.root.1
[2026-03-16 04:04:26] -rw-------. 1 boinc boinc    962560 Mar 16 04:04 result.tar.gz
04:04:28 (3404946): run_atlas exited; CPU time 17659.806938
04:04:28 (3404946): called boinc_finish(0)

</stderr_txt>
]]>

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