Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:15:45 (185951): wrapper (7.7.26015): starting
22:15:45 (185951): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 22:15:45] Arguments: --nthreads 4
[2026-03-15 22:15:45] Threads: 4
[2026-03-15 22:15:45] Checking for CVMFS
[2026-03-15 22:15:45] No cvmfs_config command found, will try listing directly
[2026-03-15 22:15:45] CVMFS is ok
[2026-03-15 22:15:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 22:15:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 22:15:45] Further information can be found at the LHC@home message board.
[2026-03-15 22:15:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 22:15:45] Checking for apptainer binary...
[2026-03-15 22:15:45] which: no apptainer in ((null))
[2026-03-15 22:15:45] apptainer is not installed, using version from CVMFS
[2026-03-15 22:15:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 22:15:45] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot252/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-15 22:15:45] apptainer works
[2026-03-15 22:15:45] Set ATHENA_PROC_NUMBER=4
[2026-03-15 22:15:45] Set ATHENA_CORE_NUMBER=4
[2026-03-15 22:15:45] Starting ATLAS job with PandaID=7055665003
[2026-03-15 22:15:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot252/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 23:46:17]  *** The last 200 lines of the pilot log: ***
[2026-03-15 23:46:17]  protocol_id=None
[2026-03-15 23:46:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-15 23:46:17]  replicas=None
[2026-03-15 23:46:17]  scope=mc23_13p6TeV
[2026-03-15 23:46:17]  status=None
[2026-03-15 23:46:17]  status_code=0
[2026-03-15 23:46:17]  storage_token=
[2026-03-15 23:46:17]  surl=/var/lib/boinc/var/slot252/slots/0/PanDA_Pilot-7055665003/log.48967094._009349.job.log.tgz.1
[2026-03-15 23:46:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/90/c7/log.48967094._009349.job.log.tgz.1
[2026-03-15 23:46:17]  workdir=None
[2026-03-15 23:46:17] ]
[2026-03-15 23:46:17] 2026-03-15 22:45:39,650 | INFO     | transferring file log.48967094._009349.job.log.tgz.1 from /var/lib/boinc/var/slot252/slots/0/PanDA_Pilot-7055665003/log.48967094._009349.job.log.tgz.1 to /var/lib/
[2026-03-15 23:46:17] 2026-03-15 22:45:39,650 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot252/slots/0/PanDA_Pilot-7055665003/log.48967094._009349.job.log.tgz.1 /var/lib/boinc/var/slot252/slots/0/
[2026-03-15 23:46:17] 2026-03-15 22:45:39,665 | INFO     | adding to output.list: log.48967094._009349.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/90/c7/log.48967094._009349.job.log.tg
[2026-03-15 23:46:17] 2026-03-15 22:45:39,665 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-15 23:46:17] 2026-03-15 22:45:39,665 | INFO     | summary of transferred files:
[2026-03-15 23:46:17] 2026-03-15 22:45:39,665 | INFO     |  -- lfn=log.48967094._009349.job.log.tgz.1, status_code=0, status=transferred
[2026-03-15 23:46:17] 2026-03-15 22:45:39,665 | INFO     | stage-out finished correctly
[2026-03-15 23:46:17] 2026-03-15 22:45:39,843 | INFO     | time since job start (5382s) is within the limit (345600.0s)
[2026-03-15 23:46:17] 2026-03-15 22:45:40,679 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-15 23:46:17] 2026-03-15 22:45:41,849 | INFO     | time since job start (5384s) is within the limit (345600.0s)
[2026-03-15 23:46:17] 2026-03-15 22:45:42,563 | INFO     | job 7055665003 has state=finished
[2026-03-15 23:46:17] 2026-03-15 22:45:42,563 | INFO     | preparing for final server update for job 7055665003 in state='finished'
[2026-03-15 23:46:17] 2026-03-15 22:45:42,563 | INFO     | reading metadata from: /var/lib/boinc/var/slot252/slots/0/PanDA_Pilot-7055665003/jobReport.json
[2026-03-15 23:46:17] 2026-03-15 22:45:42,566 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot252/slots/0/workernode_map.json
[2026-03-15 23:46:17] 2026-03-15 22:45:42,566 | INFO     | this job has now completed (state=finished)
[2026-03-15 23:46:17] 2026-03-15 22:45:42,566 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 23:46:17] 2026-03-15 22:45:42,566 | INFO     | log transfer has been attempted: DONE
[2026-03-15 23:46:17] 2026-03-15 22:45:42,566 | INFO     | job 7055665003 has finished - writing final server update
[2026-03-15 23:46:17] 2026-03-15 22:45:42,566 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2838040/.job.ad'
[2026-03-15 23:46:17] 2026-03-15 22:45:42,567 | INFO     | total number of processed events: 400 (read)
[2026-03-15 23:46:17] 2026-03-15 22:45:42,591 | INFO     | using path: /var/lib/boinc/var/slot252/slots/0/PanDA_Pilot-7055665003/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 23:46:17] 2026-03-15 22:45:42,592 | INFO     | extracted standard info from prmon json
[2026-03-15 23:46:17] 2026-03-15 22:45:42,592 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 23:46:17] 2026-03-15 22:45:42,592 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 23:46:17] 2026-03-15 22:45:42,592 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 23:46:17] 2026-03-15 22:45:42,592 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 23:46:17] 2026-03-15 22:45:42,594 | INFO     | fitting pss+swap vs Time
[2026-03-15 23:46:17] 2026-03-15 22:45:42,594 | INFO     | sum of square deviations: 164765880.0
[2026-03-15 23:46:17] 2026-03-15 22:45:42,594 | INFO     | sum of deviations: -2075732339.0
[2026-03-15 23:46:17] 2026-03-15 22:45:42,594 | INFO     | mean x: 1773612122.0
[2026-03-15 23:46:17] 2026-03-15 22:45:42,594 | INFO     | mean y: 2343364.1975308643
[2026-03-15 23:46:17] 2026-03-15 22:45:42,594 | INFO     | intersect: 22346435711.94461
[2026-03-15 23:46:17] 2026-03-15 22:45:42,594 | INFO     | chi2: 0.0011431479347611346
[2026-03-15 23:46:17] 2026-03-15 22:45:42,594 | INFO     | current memory leak: -12.60 B/s (using 81 data points, chi2=0.00)
[2026-03-15 23:46:17] 2026-03-15 22:45:42,595 | INFO     | could have reported an average CPU frequency of 3620 MHz (6 samples)
[2026-03-15 23:46:17] 2026-03-15 22:45:42,595 | INFO     | ..............................
[2026-03-15 23:46:17] 2026-03-15 22:45:42,595 | INFO     | . Timing measurements:
[2026-03-15 23:46:17] 2026-03-15 22:45:42,595 | INFO     | . get job = 0 s
[2026-03-15 23:46:17] 2026-03-15 22:45:42,595 | INFO     | . initial setup = 4 s
[2026-03-15 23:46:17] 2026-03-15 22:45:42,595 | INFO     | . payload setup = 4 s
[2026-03-15 23:46:17] 2026-03-15 22:45:42,595 | INFO     | . stage-in = 0 s
[2026-03-15 23:46:17] 2026-03-15 22:45:42,595 | INFO     | . payload execution = 5362 s
[2026-03-15 23:46:17] 2026-03-15 22:45:42,595 | INFO     | . stage-out = 0 s
[2026-03-15 23:46:17] 2026-03-15 22:45:42,595 | INFO     | . log creation = 0 s
[2026-03-15 23:46:17] 2026-03-15 22:45:42,595 | INFO     | ..............................
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | 
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | job summary report
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | --------------------------------------------------
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | PanDA job id: 7055665003
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | task id: 48967094
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | errors: (none)
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | pilot state: finished 
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | transexitcode: 0
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | exeerrorcode: 0
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | exeerrordiag: 
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | exitcode: 0
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | exitmsg: OK
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | cpuconsumptiontime: 20691 s
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | nevents: 400
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | neventsw: 0
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | pid: 196462
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | pgrp: 196462
[2026-03-15 23:46:17] 2026-03-15 22:45:42,645 | INFO     | corecount: 4
[2026-03-15 23:46:17] 2026-03-15 22:45:42,646 | INFO     | event service: False
[2026-03-15 23:46:17] 2026-03-15 22:45:42,646 | INFO     | sizes: {0: 2279974, 1: 2280236, 11: 2280264, 5370: 2306735, 5371: 2315812, 5372: 2315812, 5374: 2316134}
[2026-03-15 23:46:17] 2026-03-15 22:45:42,646 | INFO     | --------------------------------------------------
[2026-03-15 23:46:17] 2026-03-15 22:45:42,646 | INFO     | 
[2026-03-15 23:46:17] 2026-03-15 22:45:42,646 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot252/slots/0
[2026-03-15 23:46:17] 2026-03-15 22:45:42,663 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,664 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 23:46:17] 2026-03-15 22:45:42,665 | INFO     | job 7055665003 has completed (purged errors)
[2026-03-15 23:46:17] 2026-03-15 22:45:42,665 | INFO     | overall cleanup function is called
[2026-03-15 23:46:17] 2026-03-15 22:45:43,183 | WARNING  | process 196462 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 23:46:17] 2026-03-15 22:45:43,667 | INFO     | --- collectZombieJob: --- 10, [196462]
[2026-03-15 23:46:17] 2026-03-15 22:45:43,668 | INFO     | zombie collector waiting for pid 196462
[2026-03-15 23:46:17] 2026-03-15 22:45:43,668 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 23:46:17] 2026-03-15 22:45:43,668 | INFO     | collected zombie processes
[2026-03-15 23:46:17] 2026-03-15 22:45:43,668 | INFO     | will attempt to kill all subprocesses of pid=196462
[2026-03-15 23:46:17] 2026-03-15 22:45:44,301 | INFO     | PID=190530 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 23:46:17] 2026-03-15 22:45:44,301 | INFO     | .. there are 35 such processes running
[2026-03-15 23:46:17] 2026-03-15 22:45:44,303 | INFO     | using path: /var/lib/boinc/var/slot252/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 23:46:17] 2026-03-15 22:45:44,881 | INFO     | process IDs to be killed: [196462] (in reverse order)
[2026-03-15 23:46:17] 2026-03-15 22:45:45,020 | INFO     | number of running child processes to parent process 196462: 1
[2026-03-15 23:46:17] 2026-03-15 22:45:45,020 | INFO     | maximum number of monitored processes: 6
[2026-03-15 23:46:17] 2026-03-15 22:45:45,020 | INFO     | aborting job monitoring since job object (job id=7055665003) has expired
[2026-03-15 23:46:17] 2026-03-15 22:45:45,078 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 23:46:17] 2026-03-15 22:45:45,078 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 23:46:17] 2026-03-15 22:45:45,105 | INFO     | did not find any defunct processes belonging to 196462
[2026-03-15 23:46:17] 2026-03-15 22:45:45,131 | INFO     | did not find any defunct processes belonging to 196462
[2026-03-15 23:46:17] 2026-03-15 22:45:45,131 | INFO     | ready for new job
[2026-03-15 23:46:17] 2026-03-15 22:45:45,131 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 23:46:17] 2026-03-15 22:45:45,132 | INFO     | **************************************
[2026-03-15 23:46:17] 2026-03-15 22:45:45,132 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 23:46:17] 2026-03-15 22:45:45,132 | INFO     | **************************************
[2026-03-15 23:46:17] 2026-03-15 22:45:45,132 | INFO     | 
[2026-03-15 23:46:17] 2026-03-15 22:45:45,138 | INFO     | architecture information:
[2026-03-15 23:46:17] 2026-03-15 22:45:45,138 | INFO     | executing command: cat /etc/os-release
[2026-03-15 23:46:17] 2026-03-15 22:45:45,150 | INFO     | cat /etc/os-release:
[2026-03-15 23:46:17] NAME="CentOS Linux"
[2026-03-15 23:46:17] VERSION="7 (Core)"
[2026-03-15 23:46:17] ID="centos"
[2026-03-15 23:46:17] ID_LIKE="rhel fedora"
[2026-03-15 23:46:17] VERSION_ID="7"
[2026-03-15 23:46:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 23:46:17] ANSI_COLOR="0;31"
[2026-03-15 23:46:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 23:46:17] HOME_URL="https://www.centos.org/"
[2026-03-15 23:46:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 23:46:17] 
[2026-03-15 23:46:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 23:46:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 23:46:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 23:46:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 23:46:17] 
[2026-03-15 23:46:17] 2026-03-15 22:45:45,151 | INFO     | **************************************
[2026-03-15 23:46:17] 2026-03-15 22:45:45,653 | INFO     | executing command: df -mP /var/lib/boinc/var/slot252/slots/0
[2026-03-15 23:46:17] 2026-03-15 22:45:45,665 | INFO     | sufficient remaining disk space (212212908032 B)
[2026-03-15 23:46:17] 2026-03-15 22:45:45,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 23:46:17] 2026-03-15 22:45:45,665 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 23:46:17] 2026-03-15 22:45:45,665 | INFO     | update_server=False
[2026-03-15 23:46:17] 2026-03-15 22:45:45,665 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 23:46:17] 2026-03-15 22:45:45,665 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 23:46:17] 2026-03-15 22:45:45,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 23:46:17] 2026-03-15 22:45:45,666 | INFO     | will abort loop
[2026-03-15 23:46:17] 2026-03-15 22:45:45,886 | INFO     | all data control threads have been joined
[2026-03-15 23:46:17] 2026-03-15 22:45:46,432 | INFO     | all job control threads have been joined
[2026-03-15 23:46:17] 2026-03-15 22:45:46,668 | INFO     | [job] retrieve thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:46,671 | INFO     | [job] job monitor thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:46,674 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:46,733 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 23:46:17] 2026-03-15 22:45:46,775 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:46,785 | INFO     | all payload control threads have been joined
[2026-03-15 23:46:17] 2026-03-15 22:45:46,889 | INFO     | [data] control thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:46,970 | INFO     | [data] copytool_in thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:47,033 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:47,329 | INFO     | [payload] failed_post thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:47,437 | INFO     | [job] control thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:47,572 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:47,655 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 23:46:17] 2026-03-15 22:45:47,672 | INFO     | [data] copytool_out thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:47,791 | INFO     | [payload] control thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:48,075 | INFO     | [payload] validate_post thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:48,075 | INFO     | [job] validate thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:48,660 | INFO     | [job] queue monitor thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:50,737 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 23:46:17] 2026-03-15 22:45:51,974 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-03-15 23:46:17] 2026-03-15 22:46:05,041 | INFO     | [monitor] cgroup control has ended
[2026-03-15 23:46:17] 2026-03-15 22:46:05,134 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23093574391616)>', '<ExcThread(monitor, started 23093333731072)>']
[2026-03-15 23:46:17] 2026-03-15 22:46:10,158 | INFO     | all workflow threads have been joined
[2026-03-15 23:46:17] 2026-03-15 22:46:10,159 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 23:46:17] 2026-03-15 22:46:10,159 | INFO     | traces error code: 0
[2026-03-15 23:46:17] 2026-03-15 22:46:10,159 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 23:46:17] 2026-03-15 22:46:16,917 | INFO     | PID=190530 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 23:46:17] 2026-03-15 22:46:16,917 | INFO     | .. there are 35 such processes running
[2026-03-15 23:46:17] 2026-03-15 22:46:16,918 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 23:46:17] 2026-03-15 22:46:16,918 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 23:46:17] 2026-03-15 22:46:16,918 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 23:46:17] 2026-03-15 22:46:16,918 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 23:46:17] 2026-03-15 22:46:16,918 | CRITICAL | thread 'MainThread' is not alive
[2026-03-15 23:46:17] 2026-03-15 22:46:16,918 | INFO     | [monitor] control thread has ended
[2026-03-15 23:46:17] 2026-03-15 22:46:17,055 [wrapper] ==== pilot stdout END ====
[2026-03-15 23:46:17] 2026-03-15 22:46:17,057 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 23:46:17] 2026-03-15 22:46:17,060 [wrapper] pilotpid: 190530
[2026-03-15 23:46:17] 2026-03-15 22:46:17,062 [wrapper] Pilot exit status: 0
[2026-03-15 23:46:17] 2026-03-15 22:46:17,071 [wrapper] pandaids: 7055665003
[2026-03-15 23:46:17] 2026-03-15 22:46:17,189 [wrapper] cleanup supervisor_pilot  811805 190531
[2026-03-15 23:46:17] 2026-03-15 22:46:17,192 [wrapper] Test setup, not cleaning
[2026-03-15 23:46:17] 2026-03-15 22:46:17,196 [wrapper] apfmon messages muted
[2026-03-15 23:46:17] 2026-03-15 22:46:17,199 [wrapper] ==== wrapper stdout END ====
[2026-03-15 23:46:17] 2026-03-15 22:46:17,200 [wrapper] ==== wrapper stderr END ====
[2026-03-15 23:46:17]  *** Error codes and diagnostics ***
[2026-03-15 23:46:17]     "exeErrorCode": 0,
[2026-03-15 23:46:17]     "exeErrorDiag": "",
[2026-03-15 23:46:17]     "pilotErrorCode": 0,
[2026-03-15 23:46:17]     "pilotErrorDiag": "",
[2026-03-15 23:46:17]  *** Listing of results directory ***
[2026-03-15 23:46:17] total 422196
[2026-03-15 23:46:17] -rw-r--r--. 1 boinc boinc    602624 Mar 10 17:47 pilot3.tar.gz
[2026-03-15 23:46:17] -rw-r--r--. 1 boinc boinc      5111 Mar 15 08:55 queuedata.json
[2026-03-15 23:46:17] -rwx------. 1 boinc boinc     36322 Mar 15 08:55 runpilot2-wrapper.sh
[2026-03-15 23:46:17] -rw-r--r--. 1 boinc boinc       100 Mar 15 22:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 23:46:17] -rwxr-xr-x. 1 boinc boinc      7986 Mar 15 22:15 run_atlas
[2026-03-15 23:46:17] -rw-r--r--. 1 boinc boinc       105 Mar 15 22:15 job.xml
[2026-03-15 23:46:17] -rw-r--r--. 1 boinc boinc      6710 Mar 15 22:15 init_data.xml
[2026-03-15 23:46:17] -rw-r--r--. 2 boinc boinc 216501440 Mar 15 22:15 EVNT.48967092._000390.pool.root.1
[2026-03-15 23:46:17] -rw-r--r--. 2 boinc boinc     15845 Mar 15 22:15 start_atlas.sh
[2026-03-15 23:46:17] drwxrwx--x. 2 boinc boinc      4096 Mar 15 22:15 shared
[2026-03-15 23:46:17] -rw-r--r--. 2 boinc boinc    616305 Mar 15 22:15 input.tar.gz
[2026-03-15 23:46:17] -rw-r--r--. 1 boinc boinc         0 Mar 15 22:15 boinc_lockfile
[2026-03-15 23:46:17] -rw-r--r--. 1 boinc boinc      2598 Mar 15 22:15 pandaJob.out
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc   1006457 Mar 15 22:15 agis_schedconf.cvmfs.json
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc   1511579 Mar 15 22:15 agis_ddmendpoints.agis.ALL.json
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc       445 Mar 15 22:15 workernode_map.json
[2026-03-15 23:46:17] drwx------. 7 boinc boinc      4096 Mar 15 22:15 pilot3
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc 209756268 Mar 15 23:45 HITS.48967094._009349.pool.root.1
[2026-03-15 23:46:17] -rw-r--r--. 1 boinc boinc       529 Mar 15 23:45 boinc_task_state.xml
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc      1030 Mar 15 23:45 memory_monitor_summary.json
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc    263741 Mar 15 23:45 log.48967094._009349.job.log.tgz.1
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc      6356 Mar 15 23:45 heartbeat.json
[2026-03-15 23:46:17] -rw-r--r--. 1 boinc boinc      8192 Mar 15 23:45 boinc_mmap_file
[2026-03-15 23:46:17] -rw-r--r--. 1 boinc boinc        27 Mar 15 23:45 wrapper_checkpoint.txt
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc       892 Mar 15 23:46 pilotlog.txt
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc        95 Mar 15 23:46 pilot_heartbeat.json
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc    786363 Mar 15 23:46 log.48967094._009349.job.log.1
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc       357 Mar 15 23:46 output.list
[2026-03-15 23:46:17] -rw-r--r--. 1 boinc boinc       620 Mar 15 23:46 runtime_log
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc   1064960 Mar 15 23:46 result.tar.gz
[2026-03-15 23:46:17] -rw-r--r--. 1 boinc boinc      9221 Mar 15 23:46 runtime_log.err
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc       662 Mar 15 23:46 m6OLDmtUvL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmL5rLDmEXXSym.diag
[2026-03-15 23:46:17] -rw-r--r--. 1 boinc boinc     21729 Mar 15 23:46 stderr.txt
[2026-03-15 23:46:17] HITS file was successfully produced:
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc 209756268 Mar 15 23:45 shared/HITS.pool.root.1
[2026-03-15 23:46:17]  *** Contents of shared directory: ***
[2026-03-15 23:46:17] total 417940
[2026-03-15 23:46:17] -rw-r--r--. 2 boinc boinc 216501440 Mar 15 22:15 ATLAS.root_0
[2026-03-15 23:46:17] -rw-r--r--. 2 boinc boinc     15845 Mar 15 22:15 start_atlas.sh
[2026-03-15 23:46:17] -rw-r--r--. 2 boinc boinc    616305 Mar 15 22:15 input.tar.gz
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc 209756268 Mar 15 23:45 HITS.pool.root.1
[2026-03-15 23:46:17] -rw-------. 1 boinc boinc   1064960 Mar 15 23:46 result.tar.gz
23:46:18 (185951): run_atlas exited; CPU time 20932.010331
23:46:18 (185951): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN