Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:27:29 (3501871): wrapper (7.7.26015): starting
21:27:29 (3501871): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 21:27:29] Arguments: --nthreads 4
[2026-03-15 21:27:29] Threads: 4
[2026-03-15 21:27:29] Checking for CVMFS
[2026-03-15 21:27:29] No cvmfs_config command found, will try listing directly
[2026-03-15 21:27:29] CVMFS is ok
[2026-03-15 21:27:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 21:27:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 21:27:29] Further information can be found at the LHC@home message board.
[2026-03-15 21:27:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 21:27:29] Checking for apptainer binary...
[2026-03-15 21:27:29] which: no apptainer in ((null))
[2026-03-15 21:27:29] apptainer is not installed, using version from CVMFS
[2026-03-15 21:27:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 21:27:30] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot64/slots/14/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-03-15 21:27:30] apptainer works
[2026-03-15 21:27:30] Set ATHENA_PROC_NUMBER=4
[2026-03-15 21:27:30] Set ATHENA_CORE_NUMBER=4
[2026-03-15 21:27:30] Starting ATLAS job with PandaID=7039431761
[2026-03-15 21:27:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot64/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 22:42:55]  *** The last 200 lines of the pilot log: ***
[2026-03-15 22:42:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/78/eb/log.48955006._022541.job.log.tgz.1
[2026-03-15 22:42:55]  workdir=None
[2026-03-15 22:42:55] ]
[2026-03-15 22:42:55] 2026-03-15 21:41:50,719 | INFO     | transferring file log.48955006._022541.job.log.tgz.1 from /var/lib/boinc/var/slot64/slots/14/PanDA_Pilot-7039431761/log.48955006._022541.job.log.tgz.1 to /var/lib/
[2026-03-15 22:42:55] 2026-03-15 21:41:50,720 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot64/slots/14/PanDA_Pilot-7039431761/log.48955006._022541.job.log.tgz.1 /var/lib/boinc/var/slot64/slots/14/
[2026-03-15 22:42:55] 2026-03-15 21:41:50,742 | INFO     | adding to output.list: log.48955006._022541.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/78/eb/log.48955006._022541.job.log.tg
[2026-03-15 22:42:55] 2026-03-15 21:41:50,743 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-15 22:42:55] 2026-03-15 21:41:50,743 | INFO     | summary of transferred files:
[2026-03-15 22:42:55] 2026-03-15 21:41:50,743 | INFO     |  -- lfn=log.48955006._022541.job.log.tgz.1, status_code=0, status=transferred
[2026-03-15 22:42:55] 2026-03-15 21:41:50,743 | INFO     | stage-out finished correctly
[2026-03-15 22:42:55] 2026-03-15 21:41:50,791 | INFO     | time since job start (4449s) is within the limit (349056.0s)
[2026-03-15 22:42:55] 2026-03-15 21:41:50,801 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-15 22:42:55] 2026-03-15 21:41:51,255 | WARNING  | process 3512542 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 22:42:55] 2026-03-15 21:41:51,255 | INFO     | using path: /var/lib/boinc/var/slot64/slots/14/PanDA_Pilot-7039431761/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 22:42:55] 2026-03-15 21:41:51,256 | INFO     | using path: /var/lib/boinc/var/slot64/slots/14/PanDA_Pilot-7039431761/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 22:42:55] 2026-03-15 21:41:51,256 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-15 22:42:55] 2026-03-15 21:41:51,256 | WARNING  | maxPSS not found in memory monitor output
[2026-03-15 22:42:55] 2026-03-15 21:41:51,256 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3242990 B
[2026-03-15 22:42:55] 2026-03-15 21:41:51,256 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15857 B
[2026-03-15 22:42:55] 2026-03-15 21:41:51,256 | INFO     | executing command: df -mP /var/lib/boinc/var/slot64/slots/14
[2026-03-15 22:42:55] 2026-03-15 21:41:51,270 | INFO     | sufficient remaining disk space (192427327488 B)
[2026-03-15 22:42:55] 2026-03-15 21:41:51,270 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-15 22:42:55] 2026-03-15 21:41:51,271 | INFO     | size of work directory /var/lib/boinc/var/slot64/slots/14/PanDA_Pilot-7039431761: 3540446 B (within 5033164800 B limit)
[2026-03-15 22:42:55] 2026-03-15 21:41:51,271 | INFO     | pfn file=/var/lib/boinc/var/slot64/slots/14/PanDA_Pilot-7039431761/HITS.48955006._022541.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-15 22:42:55] 2026-03-15 21:41:51,271 | INFO     | total size of present files: 0 B (workdir size: 3540446 B)
[2026-03-15 22:42:55] 2026-03-15 21:41:51,271 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot64/slots/14/PanDA_Pilot-7039431761/HITS.48955006._022541.pool.root.1 since it does not exist
[2026-03-15 22:42:55] 2026-03-15 21:41:51,729 | INFO     | number of running child processes to parent process 3512542: 1
[2026-03-15 22:42:55] 2026-03-15 21:41:51,729 | INFO     | maximum number of monitored processes: 6
[2026-03-15 22:42:55] 2026-03-15 21:41:51,791 | INFO     | job 7039431761 has state=finished
[2026-03-15 22:42:55] 2026-03-15 21:41:51,791 | INFO     | preparing for final server update for job 7039431761 in state='finished'
[2026-03-15 22:42:55] 2026-03-15 21:41:52,344 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-15 22:42:55] 2026-03-15 21:41:52,344 | INFO     | reading metadata from: /var/lib/boinc/var/slot64/slots/14/PanDA_Pilot-7039431761/jobReport.json
[2026-03-15 22:42:55] 2026-03-15 21:41:52,345 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot64/slots/14/workernode_map.json
[2026-03-15 22:42:55] 2026-03-15 21:41:52,346 | INFO     | this job has now completed (state=finished)
[2026-03-15 22:42:55] 2026-03-15 21:41:52,346 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 22:42:55] 2026-03-15 21:41:52,346 | INFO     | log transfer has been attempted: DONE
[2026-03-15 22:42:55] 2026-03-15 21:41:52,346 | INFO     | job 7039431761 has finished - writing final server update
[2026-03-15 22:42:55] 2026-03-15 21:41:52,346 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3359305/.job.ad'
[2026-03-15 22:42:55] 2026-03-15 21:41:52,346 | INFO     | total number of processed events: 400 (read)
[2026-03-15 22:42:55] 2026-03-15 21:41:52,363 | INFO     | using path: /var/lib/boinc/var/slot64/slots/14/PanDA_Pilot-7039431761/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 22:42:55] 2026-03-15 21:41:52,363 | INFO     | extracted standard info from prmon json
[2026-03-15 22:42:55] 2026-03-15 21:41:52,363 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 22:42:55] 2026-03-15 21:41:52,364 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 22:42:55] 2026-03-15 21:41:52,364 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 22:42:55] 2026-03-15 21:41:52,364 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 22:42:55] 2026-03-15 21:41:52,365 | INFO     | fitting pss+swap vs Time
[2026-03-15 22:42:55] 2026-03-15 21:41:52,365 | INFO     | sum of square deviations: 89127252.5
[2026-03-15 22:42:55] 2026-03-15 21:41:52,365 | INFO     | sum of deviations: -156046875.50000003
[2026-03-15 22:42:55] 2026-03-15 21:41:52,365 | INFO     | mean x: 1773608768.5
[2026-03-15 22:42:55] 2026-03-15 21:41:52,365 | INFO     | mean y: 2343932.227272727
[2026-03-15 22:42:55] 2026-03-15 21:41:52,365 | INFO     | intersect: 3107635511.63311
[2026-03-15 22:42:55] 2026-03-15 21:41:52,365 | INFO     | chi2: 0.00024808303874954374
[2026-03-15 22:42:55] 2026-03-15 21:41:52,365 | INFO     | current memory leak: -1.75 B/s (using 66 data points, chi2=0.00)
[2026-03-15 22:42:55] 2026-03-15 21:41:52,365 | INFO     | could have reported an average CPU frequency of 3611 MHz (6 samples)
[2026-03-15 22:42:55] 2026-03-15 21:41:52,365 | INFO     | ..............................
[2026-03-15 22:42:55] 2026-03-15 21:41:52,366 | INFO     | . Timing measurements:
[2026-03-15 22:42:55] 2026-03-15 21:41:52,366 | INFO     | . get job = 0 s
[2026-03-15 22:42:55] 2026-03-15 21:41:52,366 | INFO     | . initial setup = 4 s
[2026-03-15 22:42:55] 2026-03-15 21:41:52,366 | INFO     | . payload setup = 4 s
[2026-03-15 22:42:55] 2026-03-15 21:41:52,366 | INFO     | . stage-in = 0 s
[2026-03-15 22:42:55] 2026-03-15 21:41:52,366 | INFO     | . payload execution = 4430 s
[2026-03-15 22:42:55] 2026-03-15 21:41:52,366 | INFO     | . stage-out = 0 s
[2026-03-15 22:42:55] 2026-03-15 21:41:52,366 | INFO     | . log creation = 0 s
[2026-03-15 22:42:55] 2026-03-15 21:41:52,366 | INFO     | ..............................
[2026-03-15 22:42:55] 2026-03-15 21:41:52,561 | INFO     | 
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | job summary report
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | --------------------------------------------------
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | PanDA job id: 7039431761
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | task id: 48955006
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | errors: (none)
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | pilot state: finished 
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | transexitcode: 0
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | exeerrorcode: 0
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | exeerrordiag: 
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | exitcode: 0
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | exitmsg: OK
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | cpuconsumptiontime: 16919 s
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | nevents: 400
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | neventsw: 0
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | pid: 3512542
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | pgrp: 3512542
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | corecount: 4
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | event service: False
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | sizes: {0: 2280242, 10: 2280242, 4438: 2306288, 4439: 2315366, 4440: 2315628}
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | --------------------------------------------------
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | 
[2026-03-15 22:42:55] 2026-03-15 21:41:52,562 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot64/slots/14
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,579 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,580 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,580 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,580 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 22:42:55] 2026-03-15 21:41:52,580 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,580 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 22:42:55] 2026-03-15 21:41:52,580 | INFO     | job 7039431761 has completed (purged errors)
[2026-03-15 22:42:55] 2026-03-15 21:41:52,580 | INFO     | overall cleanup function is called
[2026-03-15 22:42:55] 2026-03-15 21:41:53,586 | INFO     | --- collectZombieJob: --- 10, [3512542]
[2026-03-15 22:42:55] 2026-03-15 21:41:53,586 | INFO     | zombie collector waiting for pid 3512542
[2026-03-15 22:42:55] 2026-03-15 21:41:53,586 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 22:42:55] 2026-03-15 21:41:53,586 | INFO     | collected zombie processes
[2026-03-15 22:42:55] 2026-03-15 21:41:53,586 | INFO     | will attempt to kill all subprocesses of pid=3512542
[2026-03-15 22:42:55] 2026-03-15 21:41:54,046 | INFO     | process IDs to be killed: [3512542] (in reverse order)
[2026-03-15 22:42:55] 2026-03-15 21:41:54,262 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 22:42:55] 2026-03-15 21:41:54,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 22:42:55] 2026-03-15 21:41:54,291 | INFO     | did not find any defunct processes belonging to 3512542
[2026-03-15 22:42:55] 2026-03-15 21:41:54,321 | INFO     | did not find any defunct processes belonging to 3512542
[2026-03-15 22:42:55] 2026-03-15 21:41:54,321 | INFO     | ready for new job
[2026-03-15 22:42:55] 2026-03-15 21:41:54,321 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 22:42:55] 2026-03-15 21:41:54,322 | INFO     | **************************************
[2026-03-15 22:42:55] 2026-03-15 21:41:54,323 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-15 22:42:55] 2026-03-15 21:41:54,323 | INFO     | **************************************
[2026-03-15 22:42:55] 2026-03-15 21:41:54,323 | INFO     | 
[2026-03-15 22:42:55] 2026-03-15 21:41:54,329 | INFO     | architecture information:
[2026-03-15 22:42:55] 2026-03-15 21:41:54,329 | INFO     | executing command: cat /etc/os-release
[2026-03-15 22:42:55] 2026-03-15 21:41:54,342 | INFO     | cat /etc/os-release:
[2026-03-15 22:42:55] NAME="CentOS Linux"
[2026-03-15 22:42:55] VERSION="7 (Core)"
[2026-03-15 22:42:55] ID="centos"
[2026-03-15 22:42:55] ID_LIKE="rhel fedora"
[2026-03-15 22:42:55] VERSION_ID="7"
[2026-03-15 22:42:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 22:42:55] ANSI_COLOR="0;31"
[2026-03-15 22:42:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 22:42:55] HOME_URL="https://www.centos.org/"
[2026-03-15 22:42:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 22:42:55] 
[2026-03-15 22:42:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 22:42:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 22:42:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 22:42:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 22:42:55] 
[2026-03-15 22:42:55] 2026-03-15 21:41:54,342 | INFO     | **************************************
[2026-03-15 22:42:55] 2026-03-15 21:41:54,844 | INFO     | executing command: df -mP /var/lib/boinc/var/slot64/slots/14
[2026-03-15 22:42:55] 2026-03-15 21:41:54,865 | INFO     | sufficient remaining disk space (192426278912 B)
[2026-03-15 22:42:55] 2026-03-15 21:41:54,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 22:42:55] 2026-03-15 21:41:54,866 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 22:42:55] 2026-03-15 21:41:54,866 | INFO     | update_server=False
[2026-03-15 22:42:55] 2026-03-15 21:41:54,866 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 22:42:55] 2026-03-15 21:41:54,890 | INFO     | all job control threads have been joined
[2026-03-15 22:42:55] 2026-03-15 21:41:54,891 | INFO     | all payload control threads have been joined
[2026-03-15 22:42:55] 2026-03-15 21:41:54,909 | INFO     | all data control threads have been joined
[2026-03-15 22:42:55] 2026-03-15 21:41:55,237 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 22:42:55] 2026-03-15 21:41:55,237 | INFO     | aborting loop
[2026-03-15 22:42:55] 2026-03-15 21:41:55,871 | INFO     | [job] retrieve thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:55,896 | INFO     | [job] control thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:55,896 | INFO     | [payload] control thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:55,914 | INFO     | [data] control thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:56,015 | INFO     | [payload] validate_post thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:56,173 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:56,242 | INFO     | [job] job monitor thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:56,306 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 22:42:55] 2026-03-15 21:41:56,700 | INFO     | [job] validate thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:56,855 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 22:42:55] 2026-03-15 21:41:56,856 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:56,928 | INFO     | [payload] failed_post thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:57,172 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:57,172 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:57,328 | INFO     | [data] copytool_in thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:57,423 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 22:42:55] 2026-03-15 21:41:58,311 | INFO     | [data] copytool_out thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:41:58,428 | INFO     | [job] queue monitor thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:42:00,862 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 22:42:55] 2026-03-15 21:42:24,432 | INFO     | PID=3506745 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 22:42:55] 2026-03-15 21:42:24,432 | INFO     | .. there are 43 such processes running
[2026-03-15 22:42:55] 2026-03-15 21:42:24,433 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 22:42:55] 2026-03-15 21:42:24,433 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 22:42:55] 2026-03-15 21:42:24,433 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 22:42:55] 2026-03-15 21:42:36,476 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-03-15 22:42:55] 2026-03-15 21:42:48,474 | INFO     | [monitor] cgroup control has ended
[2026-03-15 22:42:55] 2026-03-15 21:42:50,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22650050148160)>', '<ExcThread(monitor, started 22649809151744)>']
[2026-03-15 22:42:55] 2026-03-15 21:42:50,554 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 22:42:55] 2026-03-15 21:42:50,554 | INFO     | [monitor] control thread has ended
[2026-03-15 22:42:55] 2026-03-15 21:42:55,234 | INFO     | all workflow threads have been joined
[2026-03-15 22:42:55] 2026-03-15 21:42:55,234 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 22:42:55] 2026-03-15 21:42:55,234 | INFO     | traces error code: 0
[2026-03-15 22:42:55] 2026-03-15 21:42:55,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 22:42:55] 2026-03-15 21:42:55,355 [wrapper] ==== pilot stdout END ====
[2026-03-15 22:42:55] 2026-03-15 21:42:55,357 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 22:42:55] 2026-03-15 21:42:55,358 [wrapper] pilotpid: 3506745
[2026-03-15 22:42:55] 2026-03-15 21:42:55,360 [wrapper] Pilot exit status: 0
[2026-03-15 22:42:55] 2026-03-15 21:42:55,365 [wrapper] pandaids: 7039431761
[2026-03-15 22:42:55] 2026-03-15 21:42:55,497 [wrapper] cleanup supervisor_pilot   13464 3506746
[2026-03-15 22:42:55] 2026-03-15 21:42:55,499 [wrapper] Test setup, not cleaning
[2026-03-15 22:42:55] 2026-03-15 21:42:55,501 [wrapper] apfmon messages muted
[2026-03-15 22:42:55] 2026-03-15 21:42:55,503 [wrapper] ==== wrapper stdout END ====
[2026-03-15 22:42:55] 2026-03-15 21:42:55,505 [wrapper] ==== wrapper stderr END ====
[2026-03-15 22:42:55]  *** Error codes and diagnostics ***
[2026-03-15 22:42:55]     "exeErrorCode": 0,
[2026-03-15 22:42:55]     "exeErrorDiag": "",
[2026-03-15 22:42:55]     "pilotErrorCode": 0,
[2026-03-15 22:42:55]     "pilotErrorDiag": "",
[2026-03-15 22:42:55]  *** Listing of results directory ***
[2026-03-15 22:42:55] total 619068
[2026-03-15 22:42:55] -rw-r--r--. 1 boinc boinc    584627 Mar  8 03:20 pilot3.tar.gz
[2026-03-15 22:42:55] -rwx------. 1 boinc boinc     36322 Mar  8 03:23 runpilot2-wrapper.sh
[2026-03-15 22:42:55] -rw-r--r--. 1 boinc boinc      5111 Mar  8 03:25 queuedata.json
[2026-03-15 22:42:55] -rw-r--r--. 1 boinc boinc       100 Mar 15 21:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 22:42:55] -rwxr-xr-x. 1 boinc boinc      7986 Mar 15 21:27 run_atlas
[2026-03-15 22:42:55] -rw-r--r--. 1 boinc boinc       105 Mar 15 21:27 job.xml
[2026-03-15 22:42:55] -rw-r--r--. 2 boinc boinc 443428561 Mar 15 21:27 EVNT.46701403._000451.pool.root.1
[2026-03-15 22:42:55] drwxrwx--x. 2 boinc boinc      4096 Mar 15 21:27 shared
[2026-03-15 22:42:55] -rw-r--r--. 2 boinc boinc    597959 Mar 15 21:27 input.tar.gz
[2026-03-15 22:42:55] -rw-r--r--. 2 boinc boinc     15845 Mar 15 21:27 start_atlas.sh
[2026-03-15 22:42:55] -rw-r--r--. 1 boinc boinc         0 Mar 15 21:27 boinc_lockfile
[2026-03-15 22:42:55] -rw-r--r--. 1 boinc boinc      2564 Mar 15 21:27 pandaJob.out
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc   1006454 Mar 15 21:27 agis_schedconf.cvmfs.json
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc   1511579 Mar 15 21:27 agis_ddmendpoints.agis.ALL.json
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc       444 Mar 15 21:27 workernode_map.json
[2026-03-15 22:42:55] drwx------. 5 boinc boinc      4096 Mar 15 21:27 pilot3
[2026-03-15 22:42:55] -rw-r--r--. 1 boinc boinc      6715 Mar 15 22:28 init_data.xml
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc 184669538 Mar 15 22:41 HITS.48955006._022541.pool.root.1
[2026-03-15 22:42:55] -rw-r--r--. 1 boinc boinc       530 Mar 15 22:41 boinc_task_state.xml
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc      1025 Mar 15 22:41 memory_monitor_summary.json
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc    287756 Mar 15 22:41 log.48955006._022541.job.log.tgz.1
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc      6345 Mar 15 22:41 heartbeat.json
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc        95 Mar 15 22:42 pilot_heartbeat.json
[2026-03-15 22:42:55] -rw-r--r--. 1 boinc boinc      8192 Mar 15 22:42 boinc_mmap_file
[2026-03-15 22:42:55] -rw-r--r--. 1 boinc boinc        27 Mar 15 22:42 wrapper_checkpoint.txt
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc      4831 Mar 15 22:42 pilotlog.txt
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc    658274 Mar 15 22:42 log.48955006._022541.job.log.1
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc       357 Mar 15 22:42 output.list
[2026-03-15 22:42:55] -rw-r--r--. 1 boinc boinc       620 Mar 15 22:42 runtime_log
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc    962560 Mar 15 22:42 result.tar.gz
[2026-03-15 22:42:55] -rw-r--r--. 1 boinc boinc      9221 Mar 15 22:42 runtime_log.err
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc       662 Mar 15 22:42 8kONDm0yIJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmnuXLDm4dAexm.diag
[2026-03-15 22:42:55] -rw-r--r--. 1 boinc boinc     22511 Mar 15 22:42 stderr.txt
[2026-03-15 22:42:55] HITS file was successfully produced:
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc 184669538 Mar 15 22:41 shared/HITS.pool.root.1
[2026-03-15 22:42:55]  *** Contents of shared directory: ***
[2026-03-15 22:42:55] total 614928
[2026-03-15 22:42:55] -rw-r--r--. 2 boinc boinc 443428561 Mar 15 21:27 ATLAS.root_0
[2026-03-15 22:42:55] -rw-r--r--. 2 boinc boinc    597959 Mar 15 21:27 input.tar.gz
[2026-03-15 22:42:55] -rw-r--r--. 2 boinc boinc     15845 Mar 15 21:27 start_atlas.sh
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc 184669538 Mar 15 22:41 HITS.pool.root.1
[2026-03-15 22:42:55] -rw-------. 1 boinc boinc    962560 Mar 15 22:42 result.tar.gz
22:42:56 (3501871): run_atlas exited; CPU time 17123.722859
22:42:56 (3501871): called boinc_finish(0)

</stderr_txt>
]]>

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