Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:31:20 (1111406): wrapper (7.7.26015): starting
14:31:20 (1111406): wrapper: running run_atlas (--nthreads 3)
[2026-03-15 14:31:20] Arguments: --nthreads 3
[2026-03-15 14:31:20] Threads: 3
[2026-03-15 14:31:20] Checking for CVMFS
[2026-03-15 14:31:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 14:31:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 14:31:21] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 14:31:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 14:31:21] 2.9.2.0 5444 6957 84616 157315 2 50 32967189 36864001 0 130560 0 3118604 99.985 261116 15973 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 14:31:21] CVMFS is ok
[2026-03-15 14:31:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 14:31:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 14:31:21] Further information can be found at the LHC@home message board.
[2026-03-15 14:31:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 14:31:21] Checking for apptainer binary...
[2026-03-15 14:31:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 14:31:21] Running /usr/bin/apptainer --version
[2026-03-15 14:31:21] apptainer version 1.4.1-1.1
[2026-03-15 14:31:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 14:31:21] magicA161a
[2026-03-15 14:31:21] apptainer works
[2026-03-15 14:31:21] Set ATHENA_PROC_NUMBER=3
[2026-03-15 14:31:21] Set ATHENA_CORE_NUMBER=3
[2026-03-15 14:31:21] Starting ATLAS job with PandaID=7039377419
[2026-03-15 14:31:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 15:50:43]  *** The last 200 lines of the pilot log: ***
[2026-03-15 15:50:43] 2026-03-15 14:50:12,290 | INFO     | job 7039377419 has completed (purged errors)
[2026-03-15 15:50:43] 2026-03-15 14:50:12,290 | INFO     | overall cleanup function is called
[2026-03-15 15:50:43] 2026-03-15 14:50:12,442 | WARNING  | process 1119866 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 15:50:43] 2026-03-15 14:50:12,471 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 15:50:43] 2026-03-15 14:50:12,471 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 15:50:43] 2026-03-15 14:50:12,471 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-15 15:50:43] 2026-03-15 14:50:12,471 | WARNING  | maxPSS not found in memory monitor output
[2026-03-15 15:50:43] 2026-03-15 14:50:12,472 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7039377419/payload.stdout) since it has not been created yet
[2026-03-15 15:50:43] 2026-03-15 14:50:12,472 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 15:50:43] 2026-03-15 14:50:12,482 | INFO     | sufficient remaining disk space (372935491584 B)
[2026-03-15 15:50:43] 2026-03-15 14:50:12,483 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-15 15:50:43] 2026-03-15 14:50:12,483 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7039377419/HITS.48955006._021588.pool.root.1 since it does not exist
[2026-03-15 15:50:43] 2026-03-15 14:50:12,520 | INFO     | number of running child processes to parent process 1119866: 1
[2026-03-15 15:50:43] 2026-03-15 14:50:12,520 | INFO     | maximum number of monitored processes: 6
[2026-03-15 15:50:43] 2026-03-15 14:50:12,520 | INFO     | aborting job monitoring since job object (job id=7039377419) has expired
[2026-03-15 15:50:43] 2026-03-15 14:50:13,297 | INFO     | --- collectZombieJob: --- 10, [1119866]
[2026-03-15 15:50:43] 2026-03-15 14:50:13,297 | INFO     | zombie collector waiting for pid 1119866
[2026-03-15 15:50:43] 2026-03-15 14:50:13,297 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 15:50:43] 2026-03-15 14:50:13,297 | INFO     | collected zombie processes
[2026-03-15 15:50:43] 2026-03-15 14:50:13,297 | INFO     | will attempt to kill all subprocesses of pid=1119866
[2026-03-15 15:50:43] 2026-03-15 14:50:13,337 | INFO     | process IDs to be killed: [1119866] (in reverse order)
[2026-03-15 15:50:43] 2026-03-15 14:50:13,361 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 15:50:43] 2026-03-15 14:50:13,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 15:50:43] 2026-03-15 14:50:13,363 | INFO     | did not find any defunct processes belonging to 1119866
[2026-03-15 15:50:43] 2026-03-15 14:50:13,364 | INFO     | did not find any defunct processes belonging to 1119866
[2026-03-15 15:50:43] 2026-03-15 14:50:13,364 | INFO     | ready for new job
[2026-03-15 15:50:43] 2026-03-15 14:50:13,364 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 15:50:43] 2026-03-15 14:50:13,365 | INFO     | **************************************
[2026-03-15 15:50:43] 2026-03-15 14:50:13,365 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-15 15:50:43] 2026-03-15 14:50:13,365 | INFO     | **************************************
[2026-03-15 15:50:43] 2026-03-15 14:50:13,365 | INFO     | 
[2026-03-15 15:50:43] 2026-03-15 14:50:13,365 | INFO     | architecture information:
[2026-03-15 15:50:43] 2026-03-15 14:50:13,365 | INFO     | executing command: cat /etc/os-release
[2026-03-15 15:50:43] 2026-03-15 14:50:13,374 | INFO     | cat /etc/os-release:
[2026-03-15 15:50:43] NAME="CentOS Linux"
[2026-03-15 15:50:43] VERSION="7 (Core)"
[2026-03-15 15:50:43] ID="centos"
[2026-03-15 15:50:43] ID_LIKE="rhel fedora"
[2026-03-15 15:50:43] VERSION_ID="7"
[2026-03-15 15:50:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 15:50:43] ANSI_COLOR="0;31"
[2026-03-15 15:50:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 15:50:43] HOME_URL="https://www.centos.org/"
[2026-03-15 15:50:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 15:50:43] 
[2026-03-15 15:50:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 15:50:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 15:50:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 15:50:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 15:50:43] 
[2026-03-15 15:50:43] 2026-03-15 14:50:13,374 | INFO     | **************************************
[2026-03-15 15:50:43] 2026-03-15 14:50:13,877 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 15:50:43] 2026-03-15 14:50:13,891 | INFO     | sufficient remaining disk space (372936540160 B)
[2026-03-15 15:50:43] 2026-03-15 14:50:13,891 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 15:50:43] 2026-03-15 14:50:13,891 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 15:50:43] 2026-03-15 14:50:13,891 | INFO     | update_server=False
[2026-03-15 15:50:43] 2026-03-15 14:50:13,891 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 15:50:43] 2026-03-15 14:50:13,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 15:50:43] 2026-03-15 14:50:13,891 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 15:50:43] 2026-03-15 14:50:13,891 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-15 15:50:43] 2026-03-15 14:50:13,891 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 15:50:43] 2026-03-15 14:50:13,891 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 15:50:43] 2026-03-15 14:50:13,892 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 15:50:43] 2026-03-15 14:50:13,892 | INFO     | aborting loop
[2026-03-15 15:50:43] 2026-03-15 14:50:13,892 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 15:50:43] 2026-03-15 14:50:13,892 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 15:50:43] 2026-03-15 14:50:14,109 | INFO     | all data control threads have been joined
[2026-03-15 15:50:43] 2026-03-15 14:50:14,138 | INFO     | all payload control threads have been joined
[2026-03-15 15:50:43] 2026-03-15 14:50:14,894 | INFO     | [job] retrieve thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:14,897 | INFO     | [job] queue monitor thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:14,897 | INFO     | [job] job monitor thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:15,052 | INFO     | [data] copytool_in thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:15,115 | INFO     | [data] control thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:15,119 | INFO     | all job control threads have been joined
[2026-03-15 15:50:43] 2026-03-15 14:50:15,144 | INFO     | [payload] control thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:15,275 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:15,406 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:15,897 | INFO     | [data] copytool_out thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:15,906 | INFO     | [payload] failed_post thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:16,125 | INFO     | [job] control thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:16,256 | INFO     | [job] validate thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:16,308 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:16,372 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:16,442 | INFO     | [payload] validate_post thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:17,898 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 15:50:43] 2026-03-15 14:50:37,008 | INFO     | [monitor] cgroup control has ended
[2026-03-15 15:50:43] 2026-03-15 14:50:38,366 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139694971180864)>', '<ExcThread(monitor, started 139694213953280)>']
[2026-03-15 15:50:43] 2026-03-15 14:50:39,026 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 15:50:43] 2026-03-15 14:50:39,026 | INFO     | [monitor] control thread has ended
[2026-03-15 15:50:43] 2026-03-15 14:50:43,391 | INFO     | all workflow threads have been joined
[2026-03-15 15:50:43] 2026-03-15 14:50:43,392 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 15:50:43] 2026-03-15 14:50:43,392 | INFO     | traces error code: 0
[2026-03-15 15:50:43] 2026-03-15 14:50:43,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 15:50:43] 2026-03-15 14:50:43,442 [wrapper] ==== pilot stdout END ====
[2026-03-15 15:50:43] 2026-03-15 14:50:43,445 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 15:50:43] 2026-03-15 14:50:43,447 [wrapper] pilotpid: 1115445
[2026-03-15 15:50:43] 2026-03-15 14:50:43,450 [wrapper] Pilot exit status: 0
[2026-03-15 15:50:43] 2026-03-15 14:50:43,457 [wrapper] pandaids: 7039377419
[2026-03-15 15:50:43] 2026-03-15 14:50:43,472 [wrapper] cleanup supervisor_pilot 1125148 1115446
[2026-03-15 15:50:43] 2026-03-15 14:50:43,474 [wrapper] Test setup, not cleaning
[2026-03-15 15:50:43] 2026-03-15 14:50:43,477 [wrapper] apfmon messages muted
[2026-03-15 15:50:43] 2026-03-15 14:50:43,479 [wrapper] ==== wrapper stdout END ====
[2026-03-15 15:50:43] 2026-03-15 14:50:43,482 [wrapper] ==== wrapper stderr END ====
[2026-03-15 15:50:43]  *** Error codes and diagnostics ***
[2026-03-15 15:50:43]     "exeErrorCode": 0,
[2026-03-15 15:50:43]     "exeErrorDiag": "",
[2026-03-15 15:50:43]     "pilotErrorCode": 0,
[2026-03-15 15:50:43]     "pilotErrorDiag": "",
[2026-03-15 15:50:43]  *** Listing of results directory ***
[2026-03-15 15:50:43] total 615884
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc      5111 Mar  8 01:05 queuedata.json
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc    584627 Mar  8 01:05 pilot3.tar.gz
[2026-03-15 15:50:43] -rwx------ 1 boinc boinc     36322 Mar  8 01:08 runpilot2-wrapper.sh
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc       100 Mar 15 14:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 15:50:43] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 14:31 run_atlas
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc       105 Mar 15 14:31 job.xml
[2026-03-15 15:50:43] -rw-r--r-- 2 boinc boinc 436172623 Mar 15 14:31 EVNT.46701403._000432.pool.root.1
[2026-03-15 15:50:43] -rw-r--r-- 2 boinc boinc    597956 Mar 15 14:31 input.tar.gz
[2026-03-15 15:50:43] -rw-r--r-- 2 boinc boinc     15845 Mar 15 14:31 start_atlas.sh
[2026-03-15 15:50:43] drwxrwx--x 2 boinc boinc      4096 Mar 15 14:31 shared
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc         0 Mar 15 14:31 boinc_setup_complete
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc      6449 Mar 15 14:31 init_data.xml
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc         0 Mar 15 14:31 boinc_lockfile
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc      2564 Mar 15 14:31 pandaJob.out
[2026-03-15 15:50:43] -rw------- 1 boinc boinc   1006481 Mar 15 14:31 agis_schedconf.cvmfs.json
[2026-03-15 15:50:43] -rw------- 1 boinc boinc   1511579 Mar 15 14:31 agis_ddmendpoints.agis.ALL.json
[2026-03-15 15:50:43] -rw------- 1 boinc boinc       417 Mar 15 14:31 workernode_map.json
[2026-03-15 15:50:43] drwx------ 5 boinc boinc      4096 Mar 15 14:31 pilot3
[2026-03-15 15:50:43] -rw------- 1 boinc boinc 188617795 Mar 15 15:49 HITS.48955006._021588.pool.root.1
[2026-03-15 15:50:43] -rw------- 1 boinc boinc        95 Mar 15 15:49 pilot_heartbeat.json
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc       530 Mar 15 15:49 boinc_task_state.xml
[2026-03-15 15:50:43] -rw------- 1 boinc boinc      1011 Mar 15 15:50 memory_monitor_summary.json
[2026-03-15 15:50:43] -rw------- 1 boinc boinc    276503 Mar 15 15:50 log.48955006._021588.job.log.tgz.1
[2026-03-15 15:50:43] -rw------- 1 boinc boinc      6297 Mar 15 15:50 heartbeat.json
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc      8192 Mar 15 15:50 boinc_mmap_file
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc        27 Mar 15 15:50 wrapper_checkpoint.txt
[2026-03-15 15:50:43] -rw------- 1 boinc boinc      4552 Mar 15 15:50 pilotlog.txt
[2026-03-15 15:50:43] -rw------- 1 boinc boinc    695306 Mar 15 15:50 log.48955006._021588.job.log.1
[2026-03-15 15:50:43] -rw------- 1 boinc boinc       357 Mar 15 15:50 output.list
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc       620 Mar 15 15:50 runtime_log
[2026-03-15 15:50:43] -rw------- 1 boinc boinc    993280 Mar 15 15:50 result.tar.gz
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc      8916 Mar 15 15:50 runtime_log.err
[2026-03-15 15:50:43] -rw------- 1 boinc boinc       661 Mar 15 15:50 PczMDm5rGJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmRCVLDmm3EtLm.diag
[2026-03-15 15:50:43] -rw-r--r-- 1 boinc boinc     12517 Mar 15 15:50 stderr.txt
[2026-03-15 15:50:43] HITS file was successfully produced:
[2026-03-15 15:50:43] -rw------- 1 boinc boinc 188617795 Mar 15 15:49 shared/HITS.pool.root.1
[2026-03-15 15:50:43]  *** Contents of shared directory: ***
[2026-03-15 15:50:43] total 611728
[2026-03-15 15:50:43] -rw-r--r-- 2 boinc boinc 436172623 Mar 15 14:31 ATLAS.root_0
[2026-03-15 15:50:43] -rw-r--r-- 2 boinc boinc    597956 Mar 15 14:31 input.tar.gz
[2026-03-15 15:50:43] -rw-r--r-- 2 boinc boinc     15845 Mar 15 14:31 start_atlas.sh
[2026-03-15 15:50:43] -rw------- 1 boinc boinc 188617795 Mar 15 15:49 HITS.pool.root.1
[2026-03-15 15:50:43] -rw------- 1 boinc boinc    993280 Mar 15 15:50 result.tar.gz
15:50:44 (1111406): run_atlas exited; CPU time 13181.920284
15:50:44 (1111406): called boinc_finish(0)

</stderr_txt>
]]>

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