Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:31:39 (443565): wrapper (7.7.26015): starting
12:31:39 (443565): wrapper: running run_atlas (--nthreads 3)
[2026-03-15 12:31:39] Arguments: --nthreads 3
[2026-03-15 12:31:39] Threads: 3
[2026-03-15 12:31:39] Checking for CVMFS
[2026-03-15 12:31:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 12:31:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 12:31:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 12:31:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 12:31:40] 2.9.2.0 2962 2941 64800 157312 1 50 22727690 36864000 0 130560 0 1239002 99.984 111496 14773 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 12:31:40] CVMFS is ok
[2026-03-15 12:31:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 12:31:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 12:31:40] Further information can be found at the LHC@home message board.
[2026-03-15 12:31:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 12:31:40] Checking for apptainer binary...
[2026-03-15 12:31:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 12:31:40] Running /usr/bin/apptainer --version
[2026-03-15 12:31:40] apptainer version 1.4.1-1.1
[2026-03-15 12:31:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 12:31:40] cosA121
[2026-03-15 12:31:40] apptainer works
[2026-03-15 12:31:40] Set ATHENA_PROC_NUMBER=3
[2026-03-15 12:31:40] Set ATHENA_CORE_NUMBER=3
[2026-03-15 12:31:40] Starting ATLAS job with PandaID=7054378076
[2026-03-15 12:31:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 14:05:18]  *** The last 200 lines of the pilot log: ***
[2026-03-15 14:05:18] 2026-03-15 13:04:48,142 | INFO     | collected zombie processes
[2026-03-15 14:05:18] 2026-03-15 13:04:48,142 | INFO     | will attempt to kill all subprocesses of pid=452050
[2026-03-15 14:05:18] 2026-03-15 13:04:48,178 | INFO     | process IDs to be killed: [452050] (in reverse order)
[2026-03-15 14:05:18] 2026-03-15 13:04:48,203 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 14:05:18] 2026-03-15 13:04:48,204 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 14:05:18] 2026-03-15 13:04:48,205 | INFO     | did not find any defunct processes belonging to 452050
[2026-03-15 14:05:18] 2026-03-15 13:04:48,205 | INFO     | did not find any defunct processes belonging to 452050
[2026-03-15 14:05:18] 2026-03-15 13:04:48,205 | INFO     | ready for new job
[2026-03-15 14:05:18] 2026-03-15 13:04:48,205 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 14:05:18] 2026-03-15 13:04:48,206 | INFO     | **************************************
[2026-03-15 14:05:18] 2026-03-15 13:04:48,206 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 14:05:18] 2026-03-15 13:04:48,206 | INFO     | **************************************
[2026-03-15 14:05:18] 2026-03-15 13:04:48,206 | INFO     | 
[2026-03-15 14:05:18] 2026-03-15 13:04:48,207 | INFO     | architecture information:
[2026-03-15 14:05:18] 2026-03-15 13:04:48,207 | INFO     | executing command: cat /etc/os-release
[2026-03-15 14:05:18] 2026-03-15 13:04:48,217 | INFO     | cat /etc/os-release:
[2026-03-15 14:05:18] NAME="CentOS Linux"
[2026-03-15 14:05:18] VERSION="7 (Core)"
[2026-03-15 14:05:18] ID="centos"
[2026-03-15 14:05:18] ID_LIKE="rhel fedora"
[2026-03-15 14:05:18] VERSION_ID="7"
[2026-03-15 14:05:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 14:05:18] ANSI_COLOR="0;31"
[2026-03-15 14:05:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 14:05:18] HOME_URL="https://www.centos.org/"
[2026-03-15 14:05:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 14:05:18] 
[2026-03-15 14:05:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 14:05:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 14:05:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 14:05:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 14:05:18] 
[2026-03-15 14:05:18] 2026-03-15 13:04:48,217 | INFO     | **************************************
[2026-03-15 14:05:18] 2026-03-15 13:04:48,720 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 14:05:18] 2026-03-15 13:04:48,735 | INFO     | sufficient remaining disk space (338564218880 B)
[2026-03-15 14:05:18] 2026-03-15 13:04:48,735 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 14:05:18] 2026-03-15 13:04:48,735 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 14:05:18] 2026-03-15 13:04:48,735 | INFO     | update_server=False
[2026-03-15 14:05:18] 2026-03-15 13:04:48,735 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 14:05:18] 2026-03-15 13:04:48,735 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 14:05:18] 2026-03-15 13:04:48,933 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-15 14:05:18] 2026-03-15 13:04:48,933 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-15 14:05:18] 2026-03-15 13:04:48,934 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 14:05:18] 2026-03-15 13:04:48,934 | INFO     | will abort loop
[2026-03-15 14:05:18] 2026-03-15 13:04:48,997 | INFO     | all payload control threads have been joined
[2026-03-15 14:05:18] 2026-03-15 13:04:49,071 | INFO     | job.realtimelogging is not enabled
[2026-03-15 14:05:18] 2026-03-15 13:04:49,130 | INFO     | all data control threads have been joined
[2026-03-15 14:05:18] 2026-03-15 13:04:49,180 | INFO     | all job control threads have been joined
[2026-03-15 14:05:18] 2026-03-15 13:04:49,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 14:05:18] 2026-03-15 13:04:49,741 | INFO     | [job] retrieve thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:49,741 | INFO     | [job] queue monitor thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:49,823 | INFO     | [payload] failed_post thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:49,939 | INFO     | [job] job monitor thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:50,003 | INFO     | [payload] control thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:50,077 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:50,131 | INFO     | [data] control thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:50,186 | INFO     | [job] control thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:50,555 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 14:05:18] 2026-03-15 13:04:50,630 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:50,674 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:50,938 | INFO     | [job] validate thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:51,120 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:51,166 | INFO     | [payload] validate_post thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:51,182 | INFO     | [data] copytool_in thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:51,441 | INFO     | [data] copytool_out thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:04:54,563 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 14:05:18] 2026-03-15 13:05:03,397 | INFO     | [monitor] cgroup control has ended
[2026-03-15 14:05:18] 2026-03-15 13:05:04,281 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139769916360512)>', '<ExcThread(monitor, started 139768830617344)>']
[2026-03-15 14:05:18] 2026-03-15 13:05:09,306 | INFO     | all workflow threads have been joined
[2026-03-15 14:05:18] 2026-03-15 13:05:09,307 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 14:05:18] 2026-03-15 13:05:09,308 | INFO     | traces error code: 0
[2026-03-15 14:05:18] 2026-03-15 13:05:09,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 14:05:18] 2026-03-15 13:05:18,814 | INFO     | PID=447616 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 14:05:18] 2026-03-15 13:05:18,814 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 14:05:18] 2026-03-15 13:05:18,814 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 14:05:18] 2026-03-15 13:05:18,814 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 14:05:18] 2026-03-15 13:05:18,814 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 14:05:18] 2026-03-15 13:05:18,814 | INFO     | [monitor] control thread has ended
[2026-03-15 14:05:18] 2026-03-15 13:05:18,860 [wrapper] ==== pilot stdout END ====
[2026-03-15 14:05:18] 2026-03-15 13:05:18,863 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 14:05:18] 2026-03-15 13:05:18,867 [wrapper] pilotpid: 447616
[2026-03-15 14:05:18] 2026-03-15 13:05:18,869 [wrapper] Pilot exit status: 0
[2026-03-15 14:05:18] 2026-03-15 13:05:18,878 [wrapper] pandaids: 7054378076
[2026-03-15 14:05:18] 2026-03-15 13:05:18,893 [wrapper] cleanup supervisor_pilot  457395 447617
[2026-03-15 14:05:18] 2026-03-15 13:05:18,896 [wrapper] Test setup, not cleaning
[2026-03-15 14:05:18] 2026-03-15 13:05:18,899 [wrapper] apfmon messages muted
[2026-03-15 14:05:18] 2026-03-15 13:05:18,902 [wrapper] ==== wrapper stdout END ====
[2026-03-15 14:05:18] 2026-03-15 13:05:18,904 [wrapper] ==== wrapper stderr END ====
[2026-03-15 14:05:18]  *** Error codes and diagnostics ***
[2026-03-15 14:05:18]     "exeErrorCode": 0,
[2026-03-15 14:05:18]     "exeErrorDiag": "",
[2026-03-15 14:05:18]     "pilotErrorCode": 0,
[2026-03-15 14:05:18]     "pilotErrorDiag": "",
[2026-03-15 14:05:18]  *** Listing of results directory ***
[2026-03-15 14:05:18] total 627032
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc    585013 Mar 14 20:45 pilot3.tar.gz
[2026-03-15 14:05:18] -rwx------ 1 boinc boinc     36322 Mar 14 20:46 runpilot2-wrapper.sh
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc      5111 Mar 14 20:50 queuedata.json
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc       100 Mar 15 12:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 14:05:18] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 12:31 run_atlas
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc       105 Mar 15 12:31 job.xml
[2026-03-15 14:05:18] -rw-r--r-- 2 boinc boinc 443026816 Mar 15 12:31 EVNT.46701403._002451.pool.root.1
[2026-03-15 14:05:18] -rw-r--r-- 2 boinc boinc    597534 Mar 15 12:31 input.tar.gz
[2026-03-15 14:05:18] drwxrwx--x 2 boinc boinc      4096 Mar 15 12:31 shared
[2026-03-15 14:05:18] -rw-r--r-- 2 boinc boinc     15845 Mar 15 12:31 start_atlas.sh
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc         0 Mar 15 12:31 boinc_setup_complete
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc      6197 Mar 15 12:31 init_data.xml
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc         0 Mar 15 12:31 boinc_lockfile
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc      2570 Mar 15 12:31 pandaJob.out
[2026-03-15 14:05:18] -rw------- 1 boinc boinc   1006481 Mar 15 12:31 agis_schedconf.cvmfs.json
[2026-03-15 14:05:18] -rw------- 1 boinc boinc   1511579 Mar 15 12:31 agis_ddmendpoints.agis.ALL.json
[2026-03-15 14:05:18] -rw------- 1 boinc boinc       427 Mar 15 12:31 workernode_map.json
[2026-03-15 14:05:18] drwx------ 5 boinc boinc      4096 Mar 15 12:31 pilot3
[2026-03-15 14:05:18] -rw------- 1 boinc boinc 192957567 Mar 15 14:04 HITS.48955015._025785.pool.root.1
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc       530 Mar 15 14:04 boinc_task_state.xml
[2026-03-15 14:05:18] -rw------- 1 boinc boinc      1029 Mar 15 14:04 memory_monitor_summary.json
[2026-03-15 14:05:18] -rw------- 1 boinc boinc    281914 Mar 15 14:04 log.48955015._025785.job.log.tgz.1
[2026-03-15 14:05:18] -rw------- 1 boinc boinc      6315 Mar 15 14:04 heartbeat.json
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc        27 Mar 15 14:05 wrapper_checkpoint.txt
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc      8192 Mar 15 14:05 boinc_mmap_file
[2026-03-15 14:05:18] -rw------- 1 boinc boinc       746 Mar 15 14:05 pilotlog.txt
[2026-03-15 14:05:18] -rw------- 1 boinc boinc        95 Mar 15 14:05 pilot_heartbeat.json
[2026-03-15 14:05:18] -rw------- 1 boinc boinc    811036 Mar 15 14:05 log.48955015._025785.job.log.1
[2026-03-15 14:05:18] -rw------- 1 boinc boinc       357 Mar 15 14:05 output.list
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc       620 Mar 15 14:05 runtime_log
[2026-03-15 14:05:18] -rw------- 1 boinc boinc   1105920 Mar 15 14:05 result.tar.gz
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc      8901 Mar 15 14:05 runtime_log.err
[2026-03-15 14:05:18] -rw------- 1 boinc boinc       658 Mar 15 14:05 9nHMDmX7jL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmzhrLDmycGJBn.diag
[2026-03-15 14:05:18] -rw-r--r-- 1 boinc boinc     10593 Mar 15 14:05 stderr.txt
[2026-03-15 14:05:18] HITS file was successfully produced:
[2026-03-15 14:05:18] -rw------- 1 boinc boinc 192957567 Mar 15 14:04 shared/HITS.pool.root.1
[2026-03-15 14:05:18]  *** Contents of shared directory: ***
[2026-03-15 14:05:18] total 622764
[2026-03-15 14:05:18] -rw-r--r-- 2 boinc boinc 443026816 Mar 15 12:31 ATLAS.root_0
[2026-03-15 14:05:18] -rw-r--r-- 2 boinc boinc    597534 Mar 15 12:31 input.tar.gz
[2026-03-15 14:05:18] -rw-r--r-- 2 boinc boinc     15845 Mar 15 12:31 start_atlas.sh
[2026-03-15 14:05:18] -rw------- 1 boinc boinc 192957567 Mar 15 14:04 HITS.pool.root.1
[2026-03-15 14:05:18] -rw------- 1 boinc boinc   1105920 Mar 15 14:05 result.tar.gz
14:05:20 (443565): run_atlas exited; CPU time 15623.622875
14:05:20 (443565): called boinc_finish(0)

</stderr_txt>
]]>

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