Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:52:47 (1082895): wrapper (7.7.26015): starting
11:52:47 (1082895): wrapper: running run_atlas (--nthreads 3)
[2026-03-15 11:52:47] Arguments: --nthreads 3
[2026-03-15 11:52:47] Threads: 3
[2026-03-15 11:52:47] Checking for CVMFS
[2026-03-15 11:52:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 11:52:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 11:52:48] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 11:52:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 11:52:48] 2.9.2.0 5444 6798 84068 157310 0 50 32932946 36864001 0 130560 0 3038772 99.985 255377 15897 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 11:52:48] CVMFS is ok
[2026-03-15 11:52:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 11:52:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 11:52:48] Further information can be found at the LHC@home message board.
[2026-03-15 11:52:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 11:52:48] Checking for apptainer binary...
[2026-03-15 11:52:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 11:52:48] Running /usr/bin/apptainer --version
[2026-03-15 11:52:48] apptainer version 1.4.1-1.1
[2026-03-15 11:52:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 11:52:48] magicA161a
[2026-03-15 11:52:48] apptainer works
[2026-03-15 11:52:48] Set ATHENA_PROC_NUMBER=3
[2026-03-15 11:52:48] Set ATHENA_CORE_NUMBER=3
[2026-03-15 11:52:48] Starting ATLAS job with PandaID=7053218757
[2026-03-15 11:52:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 13:12:18]  *** The last 200 lines of the pilot log: ***
[2026-03-15 13:12:18] 2026-03-15 12:11:47,873 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 13:12:18] 2026-03-15 12:11:47,874 | INFO     | **************************************
[2026-03-15 13:12:18] 2026-03-15 12:11:47,874 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 13:12:18] 2026-03-15 12:11:47,874 | INFO     | **************************************
[2026-03-15 13:12:18] 2026-03-15 12:11:47,874 | INFO     | 
[2026-03-15 13:12:18] 2026-03-15 12:11:47,874 | INFO     | architecture information:
[2026-03-15 13:12:18] 2026-03-15 12:11:47,874 | INFO     | executing command: cat /etc/os-release
[2026-03-15 13:12:18] 2026-03-15 12:11:47,883 | INFO     | cat /etc/os-release:
[2026-03-15 13:12:18] NAME="CentOS Linux"
[2026-03-15 13:12:18] VERSION="7 (Core)"
[2026-03-15 13:12:18] ID="centos"
[2026-03-15 13:12:18] ID_LIKE="rhel fedora"
[2026-03-15 13:12:18] VERSION_ID="7"
[2026-03-15 13:12:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 13:12:18] ANSI_COLOR="0;31"
[2026-03-15 13:12:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 13:12:18] HOME_URL="https://www.centos.org/"
[2026-03-15 13:12:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 13:12:18] 
[2026-03-15 13:12:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 13:12:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 13:12:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 13:12:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 13:12:18] 
[2026-03-15 13:12:18] 2026-03-15 12:11:47,883 | INFO     | **************************************
[2026-03-15 13:12:18] 2026-03-15 12:11:48,387 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 13:12:18] 2026-03-15 12:11:48,399 | INFO     | sufficient remaining disk space (372071464960 B)
[2026-03-15 13:12:18] 2026-03-15 12:11:48,399 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 13:12:18] 2026-03-15 12:11:48,399 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 13:12:18] 2026-03-15 12:11:48,399 | INFO     | update_server=False
[2026-03-15 13:12:18] 2026-03-15 12:11:48,399 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 13:12:18] 2026-03-15 12:11:48,399 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 13:12:18] 2026-03-15 12:11:48,569 | INFO     | all payload control threads have been joined
[2026-03-15 13:12:18] 2026-03-15 12:11:48,709 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-15 13:12:18] 2026-03-15 12:11:48,710 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-15 13:12:18] 2026-03-15 12:11:48,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 13:12:18] 2026-03-15 12:11:48,710 | INFO     | will abort loop
[2026-03-15 13:12:18] 2026-03-15 12:11:48,874 | INFO     | all data control threads have been joined
[2026-03-15 13:12:18] 2026-03-15 12:11:48,956 | INFO     | all job control threads have been joined
[2026-03-15 13:12:18] 2026-03-15 12:11:49,404 | INFO     | [job] retrieve thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:49,430 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:49,513 | INFO     | [data] copytool_in thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:49,573 | INFO     | [payload] control thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:49,598 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 13:12:18] 2026-03-15 12:11:49,711 | INFO     | [job] job monitor thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:49,880 | INFO     | [data] control thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:49,922 | INFO     | [payload] validate_post thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:49,962 | INFO     | [job] control thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:50,405 | INFO     | [data] copytool_out thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:50,716 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:50,794 | INFO     | [job] validate thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:50,859 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:50,899 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:50,960 | INFO     | [payload] failed_post thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:51,363 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 13:12:18] 2026-03-15 12:11:52,368 | INFO     | [job] queue monitor thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:11:53,605 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 13:12:18] 2026-03-15 12:12:03,685 | INFO     | [monitor] cgroup control has ended
[2026-03-15 13:12:18] 2026-03-15 12:12:04,148 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140657495697216)>', '<ExcThread(monitor, started 140657016432384)>']
[2026-03-15 13:12:18] 2026-03-15 12:12:09,174 | INFO     | all workflow threads have been joined
[2026-03-15 13:12:18] 2026-03-15 12:12:09,174 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 13:12:18] 2026-03-15 12:12:09,175 | INFO     | traces error code: 0
[2026-03-15 13:12:18] 2026-03-15 12:12:09,175 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 13:12:18] 2026-03-15 12:12:18,300 | INFO     | PID=1086937 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 13:12:18] 2026-03-15 12:12:18,300 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 13:12:18] 2026-03-15 12:12:18,300 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 13:12:18] 2026-03-15 12:12:18,301 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 13:12:18] 2026-03-15 12:12:18,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 13:12:18] 2026-03-15 12:12:18,301 | CRITICAL | thread 'MainThread' is not alive
[2026-03-15 13:12:18] 2026-03-15 12:12:18,301 | INFO     | [monitor] control thread has ended
[2026-03-15 13:12:18] 2026-03-15 12:12:18,346 [wrapper] ==== pilot stdout END ====
[2026-03-15 13:12:18] 2026-03-15 12:12:18,348 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 13:12:18] 2026-03-15 12:12:18,351 [wrapper] pilotpid: 1086937
[2026-03-15 13:12:18] 2026-03-15 12:12:18,353 [wrapper] Pilot exit status: 0
[2026-03-15 13:12:18] 2026-03-15 12:12:18,361 [wrapper] pandaids: 7053218757
[2026-03-15 13:12:18] 2026-03-15 12:12:18,376 [wrapper] cleanup supervisor_pilot 1097089 1086938
[2026-03-15 13:12:18] 2026-03-15 12:12:18,379 [wrapper] Test setup, not cleaning
[2026-03-15 13:12:18] 2026-03-15 12:12:18,381 [wrapper] apfmon messages muted
[2026-03-15 13:12:18] 2026-03-15 12:12:18,383 [wrapper] ==== wrapper stdout END ====
[2026-03-15 13:12:18] 2026-03-15 12:12:18,386 [wrapper] ==== wrapper stderr END ====
[2026-03-15 13:12:18]  *** Error codes and diagnostics ***
[2026-03-15 13:12:18]     "exeErrorCode": 0,
[2026-03-15 13:12:18]     "exeErrorDiag": "",
[2026-03-15 13:12:18]     "pilotErrorCode": 0,
[2026-03-15 13:12:18]     "pilotErrorDiag": "",
[2026-03-15 13:12:18]  *** Listing of results directory ***
[2026-03-15 13:12:18] total 625224
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc    585013 Mar 14 20:45 pilot3.tar.gz
[2026-03-15 13:12:18] -rwx------ 1 boinc boinc     36322 Mar 14 20:46 runpilot2-wrapper.sh
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc      5111 Mar 14 20:50 queuedata.json
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc       100 Mar 15 11:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 13:12:18] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 11:52 run_atlas
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc       105 Mar 15 11:52 job.xml
[2026-03-15 13:12:18] -rw-r--r-- 2 boinc boinc 442001132 Mar 15 11:52 EVNT.46701403._002342.pool.root.1
[2026-03-15 13:12:18] drwxrwx--x 2 boinc boinc      4096 Mar 15 11:52 shared
[2026-03-15 13:12:18] -rw-r--r-- 2 boinc boinc    597533 Mar 15 11:52 input.tar.gz
[2026-03-15 13:12:18] -rw-r--r-- 2 boinc boinc     15845 Mar 15 11:52 start_atlas.sh
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc         0 Mar 15 11:52 boinc_setup_complete
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc      6449 Mar 15 11:52 init_data.xml
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc         0 Mar 15 11:52 boinc_lockfile
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc      2566 Mar 15 11:52 pandaJob.out
[2026-03-15 13:12:18] -rw------- 1 boinc boinc   1006481 Mar 15 11:52 agis_schedconf.cvmfs.json
[2026-03-15 13:12:18] -rw------- 1 boinc boinc   1511579 Mar 15 11:52 agis_ddmendpoints.agis.ALL.json
[2026-03-15 13:12:18] -rw------- 1 boinc boinc       417 Mar 15 11:52 workernode_map.json
[2026-03-15 13:12:18] drwx------ 5 boinc boinc      4096 Mar 15 11:52 pilot3
[2026-03-15 13:12:18] -rw------- 1 boinc boinc 192434265 Mar 15 13:11 HITS.48955015._025629.pool.root.1
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc       530 Mar 15 13:11 boinc_task_state.xml
[2026-03-15 13:12:18] -rw------- 1 boinc boinc      1015 Mar 15 13:11 memory_monitor_summary.json
[2026-03-15 13:12:18] -rw------- 1 boinc boinc    234621 Mar 15 13:11 log.48955015._025629.job.log.tgz.1
[2026-03-15 13:12:18] -rw------- 1 boinc boinc      6294 Mar 15 13:11 heartbeat.json
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc      8192 Mar 15 13:11 boinc_mmap_file
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc        27 Mar 15 13:11 wrapper_checkpoint.txt
[2026-03-15 13:12:18] -rw------- 1 boinc boinc       817 Mar 15 13:12 pilotlog.txt
[2026-03-15 13:12:18] -rw------- 1 boinc boinc        95 Mar 15 13:12 pilot_heartbeat.json
[2026-03-15 13:12:18] -rw------- 1 boinc boinc    696822 Mar 15 13:12 log.48955015._025629.job.log.1
[2026-03-15 13:12:18] -rw------- 1 boinc boinc       357 Mar 15 13:12 output.list
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc       620 Mar 15 13:12 runtime_log
[2026-03-15 13:12:18] -rw------- 1 boinc boinc    952320 Mar 15 13:12 result.tar.gz
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc      8916 Mar 15 13:12 runtime_log.err
[2026-03-15 13:12:18] -rw------- 1 boinc boinc       661 Mar 15 13:12 HrBODmN7jL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm6NuLDmPwJ4gn.diag
[2026-03-15 13:12:18] -rw-r--r-- 1 boinc boinc      9769 Mar 15 13:12 stderr.txt
[2026-03-15 13:12:18] HITS file was successfully produced:
[2026-03-15 13:12:18] -rw------- 1 boinc boinc 192434265 Mar 15 13:11 shared/HITS.pool.root.1
[2026-03-15 13:12:18]  *** Contents of shared directory: ***
[2026-03-15 13:12:18] total 621112
[2026-03-15 13:12:18] -rw-r--r-- 2 boinc boinc 442001132 Mar 15 11:52 ATLAS.root_0
[2026-03-15 13:12:18] -rw-r--r-- 2 boinc boinc    597533 Mar 15 11:52 input.tar.gz
[2026-03-15 13:12:18] -rw-r--r-- 2 boinc boinc     15845 Mar 15 11:52 start_atlas.sh
[2026-03-15 13:12:18] -rw------- 1 boinc boinc 192434265 Mar 15 13:11 HITS.pool.root.1
[2026-03-15 13:12:18] -rw------- 1 boinc boinc    952320 Mar 15 13:12 result.tar.gz
13:12:19 (1082895): run_atlas exited; CPU time 13249.318870
13:12:19 (1082895): called boinc_finish(0)

</stderr_txt>
]]>

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