Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:17:31 (21021): wrapper (7.7.26015): starting
10:17:31 (21021): wrapper: running run_atlas (--nthreads 8)
[2026-03-15 10:17:31] Arguments: --nthreads 8
[2026-03-15 10:17:31] Threads: 8
[2026-03-15 10:17:31] Checking for CVMFS
[2026-03-15 10:17:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 10:17:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 10:17:38] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 10:17:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 10:17:39] 2.11.2.0 13652 128812 141656 157308 1 53 17714927 25165824 4610 130560 155 42378991 99.853 26449613 908 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-15 10:17:39] CVMFS is ok
[2026-03-15 10:17:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 10:17:39] Checking for apptainer binary...
[2026-03-15 10:17:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 10:17:39] Running /usr/bin/apptainer --version
[2026-03-15 10:17:39] apptainer version 1.3.2-1.el7
[2026-03-15 10:17:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 10:17:56] cg-vwn453.simple-grid.lan
[2026-03-15 10:17:56] apptainer works
[2026-03-15 10:17:57] Set ATHENA_PROC_NUMBER=8
[2026-03-15 10:17:57] Set ATHENA_CORE_NUMBER=8
[2026-03-15 10:17:57] Starting ATLAS job with PandaID=7053434148
[2026-03-15 10:17:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 13:55:23]  *** The last 200 lines of the pilot log: ***
[2026-03-15 13:55:23] 2026-03-15 12:54:31,144 | INFO     | job 7053434148 has finished - writing final server update
[2026-03-15 13:55:23] 2026-03-15 12:54:31,144 | INFO     | total number of processed events: 400 (read)
[2026-03-15 13:55:23] 2026-03-15 12:54:31,146 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-7053434148/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 13:55:23] 2026-03-15 12:54:31,146 | INFO     | extracted standard info from prmon json
[2026-03-15 13:55:23] 2026-03-15 12:54:31,147 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 13:55:23] 2026-03-15 12:54:31,147 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 13:55:23] 2026-03-15 12:54:31,147 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 13:55:23] 2026-03-15 12:54:31,147 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 13:55:23] 2026-03-15 12:54:31,151 | INFO     | fitting pss+swap vs Time
[2026-03-15 13:55:23] 2026-03-15 12:54:31,151 | INFO     | sum of square deviations: 2632440055.0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,153 | INFO     | sum of deviations: 32499266185.500015
[2026-03-15 13:55:23] 2026-03-15 12:54:31,153 | INFO     | mean x: 1773573033.5
[2026-03-15 13:55:23] 2026-03-15 12:54:31,153 | INFO     | mean y: 2459460.338235294
[2026-03-15 13:55:23] 2026-03-15 12:54:31,153 | INFO     | intersect: -21893508125.195724
[2026-03-15 13:55:23] 2026-03-15 12:54:31,154 | INFO     | chi2: 6.323582051287361
[2026-03-15 13:55:23] 2026-03-15 12:54:31,154 | INFO     | sum of square deviations: 2443580700.0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,155 | INFO     | sum of deviations: 45265025600.0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,155 | INFO     | mean x: 1773572881.0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,156 | INFO     | mean y: 2469552.5728643215
[2026-03-15 13:55:23] 2026-03-15 12:54:31,156 | INFO     | intersect: -32851293722.743046
[2026-03-15 13:55:23] 2026-03-15 12:54:31,156 | INFO     | chi2: 5.616580980800058
[2026-03-15 13:55:23] 2026-03-15 12:54:31,156 | INFO     | current chi2=5.616580980800058 (change=11.180388975001456 %)
[2026-03-15 13:55:23] 2026-03-15 12:54:31,156 | INFO     | right removable region: 198
[2026-03-15 13:55:23] 2026-03-15 12:54:31,157 | INFO     | sum of square deviations: 2443580700.0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,158 | INFO     | sum of deviations: -37231681413.0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,158 | INFO     | mean x: 1773573186.0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,158 | INFO     | mean y: 2515696.4170854273
[2026-03-15 13:55:23] 2026-03-15 12:54:31,158 | INFO     | intersect: 27025610052.904427
[2026-03-15 13:55:23] 2026-03-15 12:54:31,159 | INFO     | chi2: 1.6546454470579977
[2026-03-15 13:55:23] 2026-03-15 12:54:31,159 | INFO     | current chi2=1.6546454470579977 (change=73.83373167869082 %)
[2026-03-15 13:55:23] 2026-03-15 12:54:31,159 | INFO     | sum of square deviations: 2263977332.5
[2026-03-15 13:55:23] 2026-03-15 12:54:31,160 | INFO     | sum of deviations: -57363117840.99994
[2026-03-15 13:55:23] 2026-03-15 12:54:31,161 | INFO     | mean x: 1773573338.5
[2026-03-15 13:55:23] 2026-03-15 12:54:31,161 | INFO     | mean y: 2532606.81443299
[2026-03-15 13:55:23] 2026-03-15 12:54:31,161 | INFO     | intersect: 44940127588.68962
[2026-03-15 13:55:23] 2026-03-15 12:54:31,165 | INFO     | chi2: 1.0087084958400376
[2026-03-15 13:55:23] 2026-03-15 12:54:31,165 | INFO     | current chi2=1.0087084958400376 (change=39.037786153308716 %)
[2026-03-15 13:55:23] 2026-03-15 12:54:31,166 | INFO     | sum of square deviations: 2093397390.0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,167 | INFO     | sum of deviations: -55962485007.000015
[2026-03-15 13:55:23] 2026-03-15 12:54:31,167 | INFO     | mean x: 1773573491.0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,167 | INFO     | mean y: 2531307.111111111
[2026-03-15 13:55:23] 2026-03-15 12:54:31,167 | INFO     | intersect: 47415210988.96558
[2026-03-15 13:55:23] 2026-03-15 12:54:31,168 | INFO     | chi2: 0.9919495767780125
[2026-03-15 13:55:23] 2026-03-15 12:54:31,168 | INFO     | current chi2=0.9919495767780125 (change=1.6614234073708787 %)
[2026-03-15 13:55:23] 2026-03-15 12:54:31,168 | INFO     | left removable region: 30
[2026-03-15 13:55:23] 2026-03-15 12:54:31,168 | INFO     | sum of square deviations: 1470248962.0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,169 | INFO     | sum of deviations: -24499295464.500004
[2026-03-15 13:55:23] 2026-03-15 12:54:31,169 | INFO     | mean x: 1773573765.5
[2026-03-15 13:55:23] 2026-03-15 12:54:31,169 | INFO     | mean y: 2525906.279761905
[2026-03-15 13:55:23] 2026-03-15 12:54:31,170 | INFO     | intersect: 29556233361.35113
[2026-03-15 13:55:23] 2026-03-15 12:54:31,170 | INFO     | chi2: 0.16833764463809978
[2026-03-15 13:55:23] 2026-03-15 12:54:31,170 | INFO     | current memory leak: -16.66 B/s (using 168 data points, chi2=0.17)
[2026-03-15 13:55:23] 2026-03-15 12:54:31,170 | INFO     | could have reported an average CPU frequency of 2250 MHz (11 samples)
[2026-03-15 13:55:23] 2026-03-15 12:54:31,171 | INFO     | ..............................
[2026-03-15 13:55:23] 2026-03-15 12:54:31,171 | INFO     | . Timing measurements:
[2026-03-15 13:55:23] 2026-03-15 12:54:31,171 | INFO     | . get job = 0 s
[2026-03-15 13:55:23] 2026-03-15 12:54:31,171 | INFO     | . initial setup = 93 s
[2026-03-15 13:55:23] 2026-03-15 12:54:31,171 | INFO     | . payload setup = 138 s
[2026-03-15 13:55:23] 2026-03-15 12:54:31,171 | INFO     | . stage-in = 0 s
[2026-03-15 13:55:23] 2026-03-15 12:54:31,171 | INFO     | . payload execution = 12544 s
[2026-03-15 13:55:23] 2026-03-15 12:54:31,171 | INFO     | . stage-out = 3 s
[2026-03-15 13:55:23] 2026-03-15 12:54:31,171 | INFO     | . log creation = 1 s
[2026-03-15 13:55:23] 2026-03-15 12:54:31,171 | INFO     | ..............................
[2026-03-15 13:55:23] 2026-03-15 12:54:31,233 | INFO     | time since job start (12698s) is within the limit (345600.0s)
[2026-03-15 13:55:23] 2026-03-15 12:54:31,451 | INFO     | 
[2026-03-15 13:55:23] 2026-03-15 12:54:31,451 | INFO     | job summary report
[2026-03-15 13:55:23] 2026-03-15 12:54:31,451 | INFO     | --------------------------------------------------
[2026-03-15 13:55:23] 2026-03-15 12:54:31,451 | INFO     | PanDA job id: 7053434148
[2026-03-15 13:55:23] 2026-03-15 12:54:31,451 | INFO     | task id: 48955015
[2026-03-15 13:55:23] 2026-03-15 12:54:31,452 | INFO     | errors: (none)
[2026-03-15 13:55:23] 2026-03-15 12:54:31,452 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 13:55:23] 2026-03-15 12:54:31,452 | INFO     | pilot state: finished 
[2026-03-15 13:55:23] 2026-03-15 12:54:31,452 | INFO     | transexitcode: 0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,452 | INFO     | exeerrorcode: 0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,452 | INFO     | exeerrordiag: 
[2026-03-15 13:55:23] 2026-03-15 12:54:31,452 | INFO     | exitcode: 0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,452 | INFO     | exitmsg: OK
[2026-03-15 13:55:23] 2026-03-15 12:54:31,452 | INFO     | cpuconsumptiontime: 47789 s
[2026-03-15 13:55:23] 2026-03-15 12:54:31,452 | INFO     | nevents: 400
[2026-03-15 13:55:23] 2026-03-15 12:54:31,452 | INFO     | neventsw: 0
[2026-03-15 13:55:23] 2026-03-15 12:54:31,452 | INFO     | pid: 29620
[2026-03-15 13:55:23] 2026-03-15 12:54:31,453 | INFO     | pgrp: 29620
[2026-03-15 13:55:23] 2026-03-15 12:54:31,453 | INFO     | corecount: 8
[2026-03-15 13:55:23] 2026-03-15 12:54:31,453 | INFO     | event service: False
[2026-03-15 13:55:23] 2026-03-15 12:54:31,453 | INFO     | sizes: {0: 2279698, 1: 2280215, 2: 2280215, 12686: 2310190, 12687: 2310189, 12690: 2319245, 12692: 2319429, 12695: 2319623}
[2026-03-15 13:55:23] 2026-03-15 12:54:31,453 | INFO     | --------------------------------------------------
[2026-03-15 13:55:23] 2026-03-15 12:54:31,453 | INFO     | 
[2026-03-15 13:55:23] 2026-03-15 12:54:31,453 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2026-03-15 13:55:23] 2026-03-15 12:54:32,071 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,072 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,072 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,072 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,072 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,072 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,072 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,073 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,073 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,073 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,073 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,073 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,073 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,073 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,073 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,074 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,074 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,074 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 13:55:23] 2026-03-15 12:54:32,074 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,074 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 13:55:23] 2026-03-15 12:54:32,074 | INFO     | job 7053434148 has completed (purged errors)
[2026-03-15 13:55:23] 2026-03-15 12:54:32,075 | INFO     | overall cleanup function is called
[2026-03-15 13:55:23] 2026-03-15 12:54:33,084 | INFO     | --- collectZombieJob: --- 10, [29620]
[2026-03-15 13:55:23] 2026-03-15 12:54:33,084 | INFO     | zombie collector waiting for pid 29620
[2026-03-15 13:55:23] 2026-03-15 12:54:33,084 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 13:55:23] 2026-03-15 12:54:33,084 | INFO     | collected zombie processes
[2026-03-15 13:55:23] 2026-03-15 12:54:33,085 | INFO     | will attempt to kill all subprocesses of pid=29620
[2026-03-15 13:55:23] 2026-03-15 12:54:33,184 | INFO     | process IDs to be killed: [29620] (in reverse order)
[2026-03-15 13:55:23] 2026-03-15 12:54:33,833 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 13:55:23] 2026-03-15 12:54:33,834 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 13:55:23] 2026-03-15 12:54:33,840 | INFO     | did not find any defunct processes belonging to 29620
[2026-03-15 13:55:23] 2026-03-15 12:54:33,843 | INFO     | did not find any defunct processes belonging to 29620
[2026-03-15 13:55:23] 2026-03-15 12:54:33,843 | INFO     | ready for new job
[2026-03-15 13:55:23] 2026-03-15 12:54:33,843 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 13:55:23] 2026-03-15 12:54:33,845 | INFO     | **************************************
[2026-03-15 13:55:23] 2026-03-15 12:54:33,845 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 13:55:23] 2026-03-15 12:54:33,845 | INFO     | **************************************
[2026-03-15 13:55:23] 2026-03-15 12:54:33,845 | INFO     | 
[2026-03-15 13:55:23] 2026-03-15 12:54:33,846 | INFO     | pilot is running in a VM
[2026-03-15 13:55:23] 2026-03-15 12:54:33,846 | INFO     | architecture information:
[2026-03-15 13:55:23] 2026-03-15 12:54:33,850 | INFO     | executing command: cat /etc/os-release
[2026-03-15 13:55:23] 2026-03-15 12:54:33,995 | INFO     | cat /etc/os-release:
[2026-03-15 13:55:23] NAME="CentOS Linux"
[2026-03-15 13:55:23] VERSION="7 (Core)"
[2026-03-15 13:55:23] ID="centos"
[2026-03-15 13:55:23] ID_LIKE="rhel fedora"
[2026-03-15 13:55:23] VERSION_ID="7"
[2026-03-15 13:55:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 13:55:23] ANSI_COLOR="0;31"
[2026-03-15 13:55:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 13:55:23] HOME_URL="https://www.centos.org/"
[2026-03-15 13:55:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 13:55:23] 
[2026-03-15 13:55:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 13:55:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 13:55:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 13:55:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 13:55:23] 
[2026-03-15 13:55:23] 2026-03-15 12:54:33,996 | INFO     | **************************************
[2026-03-15 13:55:23] 2026-03-15 12:54:34,499 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2026-03-15 13:55:23] 2026-03-15 12:54:34,637 | INFO     | sufficient remaining disk space (496328769536 B)
[2026-03-15 13:55:23] 2026-03-15 12:54:34,638 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 13:55:23] 2026-03-15 12:54:34,638 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 13:55:23] 2026-03-15 12:54:34,638 | INFO     | update_server=False
[2026-03-15 13:55:23] 2026-03-15 12:54:34,638 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 13:55:23] 2026-03-15 12:54:34,639 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 13:55:23] 2026-03-15 12:54:34,646 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 13:55:23] 2026-03-15 12:54:35,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 13:55:23] 2026-03-15 12:54:35,122 | INFO     | aborting loop
[2026-03-15 13:55:23] 2026-03-15 12:54:35,599 | INFO     | all payload control threads have been joined
[2026-03-15 13:55:23] 2026-03-15 12:54:35,644 | INFO     | [job] retrieve thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:35,723 | INFO     | all data control threads have been joined
[2026-03-15 13:55:23] 2026-03-15 12:54:35,921 | INFO     | [data] copytool_in thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:36,032 | INFO     | all job control threads have been joined
[2026-03-15 13:55:23] 2026-03-15 12:54:36,128 | INFO     | [job] job monitor thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:36,331 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 13:55:23] 2026-03-15 12:54:36,358 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:36,424 | INFO     | [payload] validate_post thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:36,566 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:36,605 | INFO     | [payload] control thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:36,653 | INFO     | [data] copytool_out thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:36,729 | INFO     | [data] control thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:36,761 | INFO     | [job] validate thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:36,779 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:36,839 | INFO     | [payload] failed_post thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:37,014 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:37,038 | INFO     | [job] control thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:37,337 | INFO     | [job] queue monitor thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:54:38,647 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 13:55:23] 2026-03-15 12:55:04,393 | INFO     | PID=25087 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-15 13:55:23] 2026-03-15 12:55:04,393 | INFO     | .. there are 9 such processes running
[2026-03-15 13:55:23] 2026-03-15 12:55:04,394 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 13:55:23] 2026-03-15 12:55:04,394 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 13:55:23] 2026-03-15 12:55:04,394 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 13:55:23] 2026-03-15 12:55:14,416 | INFO     | [monitor] cgroup control has ended
[2026-03-15 13:55:23] 2026-03-15 12:55:14,470 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140296449640256)>', '<ExcThread(monitor, started 140296021067520)>']
[2026-03-15 13:55:23] 2026-03-15 12:55:15,459 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 13:55:23] 2026-03-15 12:55:15,459 | INFO     | [monitor] control thread has ended
[2026-03-15 13:55:23] 2026-03-15 12:55:19,496 | INFO     | all workflow threads have been joined
[2026-03-15 13:55:23] 2026-03-15 12:55:19,496 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 13:55:23] 2026-03-15 12:55:19,497 | INFO     | traces error code: 0
[2026-03-15 13:55:23] 2026-03-15 12:55:19,497 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 13:55:23] 2026-03-15 12:55:19,634 [wrapper] ==== pilot stdout END ====
[2026-03-15 13:55:23] 2026-03-15 12:55:19,640 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 13:55:23] 2026-03-15 12:55:19,644 [wrapper] pilotpid: 25087
[2026-03-15 13:55:23] 2026-03-15 12:55:19,651 [wrapper] Pilot exit status: 0
[2026-03-15 13:55:23] 2026-03-15 12:55:19,791 [wrapper] pandaids: 7053434148
[2026-03-15 13:55:23] 2026-03-15 12:55:20,667 [wrapper] cleanup supervisor_pilot  4763 25088
[2026-03-15 13:55:23] 2026-03-15 12:55:20,774 [wrapper] Test setup, not cleaning
[2026-03-15 13:55:23] 2026-03-15 12:55:20,881 [wrapper] apfmon messages muted
[2026-03-15 13:55:23] 2026-03-15 12:55:20,971 [wrapper] ==== wrapper stdout END ====
[2026-03-15 13:55:23] 2026-03-15 12:55:21,089 [wrapper] ==== wrapper stderr END ====
[2026-03-15 13:55:23]  *** Error codes and diagnostics ***
[2026-03-15 13:55:23]     "exeErrorCode": 0,
[2026-03-15 13:55:23]     "exeErrorDiag": "",
[2026-03-15 13:55:23]     "pilotErrorCode": 0,
[2026-03-15 13:55:23]     "pilotErrorDiag": "",
[2026-03-15 13:55:23]  *** Listing of results directory ***
[2026-03-15 13:55:23] total 607652
[2026-03-15 13:55:23] -rw-r--r--. 1 boinc boinc    585013 Mar 14 20:45 pilot3.tar.gz
[2026-03-15 13:55:23] -rwx------. 1 boinc boinc     36322 Mar 14 20:46 runpilot2-wrapper.sh
[2026-03-15 13:55:23] -rw-r--r--. 1 boinc boinc      5111 Mar 14 20:50 queuedata.json
[2026-03-15 13:55:23] -rw-r--r--. 1 boinc boinc       100 Mar 15 10:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 13:55:23] -rwxr-xr-x. 1 boinc boinc      7986 Mar 15 10:17 run_atlas
[2026-03-15 13:55:23] -rw-r--r--. 1 boinc boinc       105 Mar 15 10:17 job.xml
[2026-03-15 13:55:23] -rw-r--r--. 2 boinc boinc 439945305 Mar 15 10:17 EVNT.46701403._002338.pool.root.1
[2026-03-15 13:55:23] -rw-r--r--. 2 boinc boinc     15845 Mar 15 10:17 start_atlas.sh
[2026-03-15 13:55:23] drwxrwx--x. 2 boinc boinc        68 Mar 15 10:17 shared
[2026-03-15 13:55:23] -rw-r--r--. 2 boinc boinc    597539 Mar 15 10:17 input.tar.gz
[2026-03-15 13:55:23] -rw-r--r--. 1 boinc boinc      6392 Mar 15 10:17 init_data.xml
[2026-03-15 13:55:23] -rw-r--r--. 1 boinc boinc         0 Mar 15 10:17 boinc_lockfile
[2026-03-15 13:55:23] -rw-r--r--. 1 boinc boinc      2570 Mar 15 10:17 pandaJob.out
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc       413 Mar 15 10:22 workernode_map.json
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc   1006481 Mar 15 10:22 agis_schedconf.cvmfs.json
[2026-03-15 13:55:23] drwx------. 5 boinc boinc      4096 Mar 15 10:22 pilot3
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc 173859520 Mar 15 13:53 HITS.48955015._025639.pool.root.1
[2026-03-15 13:55:23] -rw-r--r--. 1 boinc boinc       532 Mar 15 13:53 boinc_task_state.xml
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc      1014 Mar 15 13:54 memory_monitor_summary.json
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc   1511579 Mar 15 13:54 agis_ddmendpoints.agis.ALL.json
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc    469653 Mar 15 13:54 log.48955015._025639.job.log.tgz.1
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc      6326 Mar 15 13:54 heartbeat.json
[2026-03-15 13:55:23] -rw-r--r--. 1 boinc boinc      8192 Mar 15 13:54 boinc_mmap_file
[2026-03-15 13:55:23] -rw-r--r--. 1 boinc boinc        28 Mar 15 13:54 wrapper_checkpoint.txt
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc        95 Mar 15 13:55 pilot_heartbeat.json
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc      4881 Mar 15 13:55 pilotlog.txt
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc   1784377 Mar 15 13:55 log.48955015._025639.job.log.1
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc       357 Mar 15 13:55 output.list
[2026-03-15 13:55:23] -rw-r--r--. 1 boinc boinc       620 Mar 15 13:55 runtime_log
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc   2273280 Mar 15 13:55 result.tar.gz
[2026-03-15 13:55:23] -rw-r--r--. 1 boinc boinc      8832 Mar 15 13:55 runtime_log.err
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc       654 Mar 15 13:55 f1JODmN7jL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmDOuLDmrPbNXm.diag
[2026-03-15 13:55:23] -rw-r--r--. 1 boinc boinc     20743 Mar 15 13:55 stderr.txt
[2026-03-15 13:55:23] HITS file was successfully produced:
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc 173859520 Mar 15 13:53 shared/HITS.pool.root.1
[2026-03-15 13:55:23]  *** Contents of shared directory: ***
[2026-03-15 13:55:23] total 602244
[2026-03-15 13:55:23] -rw-r--r--. 2 boinc boinc 439945305 Mar 15 10:17 ATLAS.root_0
[2026-03-15 13:55:23] -rw-r--r--. 2 boinc boinc     15845 Mar 15 10:17 start_atlas.sh
[2026-03-15 13:55:23] -rw-r--r--. 2 boinc boinc    597539 Mar 15 10:17 input.tar.gz
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc 173859520 Mar 15 13:53 HITS.pool.root.1
[2026-03-15 13:55:23] -rw-------. 1 boinc boinc   2273280 Mar 15 13:55 result.tar.gz
13:55:24 (21021): run_atlas exited; CPU time 47968.127964
13:55:24 (21021): called boinc_finish(0)

</stderr_txt>
]]>

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