Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:04:38 (429220): wrapper (7.7.26015): starting
11:04:38 (429220): wrapper: running run_atlas (--nthreads 3)
[2026-03-15 11:04:38] Arguments: --nthreads 3
[2026-03-15 11:04:38] Threads: 3
[2026-03-15 11:04:38] Checking for CVMFS
[2026-03-15 11:04:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 11:04:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 11:04:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 11:04:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 11:04:39] 2.9.2.0 2962 2854 63400 157308 3 50 22707908 36864000 0 130560 0 1198996 99.984 107704 14525 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 11:04:39] CVMFS is ok
[2026-03-15 11:04:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 11:04:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 11:04:39] Further information can be found at the LHC@home message board.
[2026-03-15 11:04:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 11:04:39] Checking for apptainer binary...
[2026-03-15 11:04:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 11:04:39] Running /usr/bin/apptainer --version
[2026-03-15 11:04:39] apptainer version 1.4.1-1.1
[2026-03-15 11:04:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 11:04:59] cosA121
[2026-03-15 11:04:59] apptainer works
[2026-03-15 11:04:59] Set ATHENA_PROC_NUMBER=3
[2026-03-15 11:04:59] Set ATHENA_CORE_NUMBER=3
[2026-03-15 11:04:59] Starting ATLAS job with PandaID=7053674874
[2026-03-15 11:04:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 12:31:30]  *** The last 200 lines of the pilot log: ***
[2026-03-15 12:31:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 12:31:30] 
[2026-03-15 12:31:30] 2026-03-15 11:30:36,238 | INFO     | **************************************
[2026-03-15 12:31:30] 2026-03-15 11:30:36,741 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 12:31:30] 2026-03-15 11:30:36,756 | INFO     | sufficient remaining disk space (338147934208 B)
[2026-03-15 12:31:30] 2026-03-15 11:30:36,756 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 12:31:30] 2026-03-15 11:30:36,756 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 12:31:30] 2026-03-15 11:30:36,756 | INFO     | update_server=False
[2026-03-15 12:31:30] 2026-03-15 11:30:36,756 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 12:31:30] 2026-03-15 11:30:36,756 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 12:31:30] 2026-03-15 11:30:37,019 | WARNING  | process 437710 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 12:31:30] 2026-03-15 11:30:37,046 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 12:31:30] 2026-03-15 11:30:37,047 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 12:31:30] 2026-03-15 11:30:37,047 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-15 12:31:30] 2026-03-15 11:30:37,047 | WARNING  | maxPSS not found in memory monitor output
[2026-03-15 12:31:30] 2026-03-15 11:30:37,047 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7053674874/payload.stdout) since it has not been created yet
[2026-03-15 12:31:30] 2026-03-15 11:30:37,047 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 12:31:30] 2026-03-15 11:30:37,059 | INFO     | sufficient remaining disk space (338147934208 B)
[2026-03-15 12:31:30] 2026-03-15 11:30:37,059 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-15 12:31:30] 2026-03-15 11:30:37,059 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7053674874/HITS.48955010._051264.pool.root.1 since it does not exist
[2026-03-15 12:31:30] 2026-03-15 11:30:37,093 | INFO     | number of running child processes to parent process 437710: 1
[2026-03-15 12:31:30] 2026-03-15 11:30:37,093 | INFO     | maximum number of monitored processes: 6
[2026-03-15 12:31:30] 2026-03-15 11:30:37,093 | INFO     | aborting job monitoring since job object (job id=7053674874) has expired
[2026-03-15 12:31:30] 2026-03-15 11:30:37,093 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 12:31:30] 2026-03-15 11:30:37,093 | INFO     | will abort loop
[2026-03-15 12:31:30] 2026-03-15 11:30:37,108 | INFO     | all data control threads have been joined
[2026-03-15 12:31:30] 2026-03-15 11:30:37,144 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 12:31:30] 2026-03-15 11:30:37,238 | INFO     | all job control threads have been joined
[2026-03-15 12:31:30] 2026-03-15 11:30:37,733 | INFO     | all payload control threads have been joined
[2026-03-15 12:31:30] 2026-03-15 11:30:37,762 | INFO     | [job] retrieve thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:38,099 | INFO     | [job] job monitor thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:38,114 | INFO     | [data] control thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:38,244 | INFO     | [job] control thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:38,305 | INFO     | [payload] failed_post thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:38,739 | INFO     | [payload] control thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:38,846 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:38,887 | INFO     | [job] validate thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:39,091 | INFO     | [data] copytool_in thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:39,147 | INFO     | [data] copytool_out thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:39,149 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:39,175 | INFO     | [payload] validate_post thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:39,243 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:39,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 12:31:30] 2026-03-15 11:30:40,700 | INFO     | [job] queue monitor thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:40,763 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:30:47,720 | INFO     | job.realtimelogging is not enabled
[2026-03-15 12:31:30] 2026-03-15 11:30:48,726 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 12:31:30] 2026-03-15 11:31:06,356 | INFO     | PID=433281 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 12:31:30] 2026-03-15 11:31:06,357 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 12:31:30] 2026-03-15 11:31:06,357 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 12:31:30] 2026-03-15 11:31:06,357 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 12:31:30] 2026-03-15 11:31:24,810 | INFO     | [monitor] cgroup control has ended
[2026-03-15 12:31:30] 2026-03-15 11:31:25,762 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139884416382784)>', '<ExcThread(monitor, started 139883628705536)>']
[2026-03-15 12:31:30] 2026-03-15 11:31:26,464 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 12:31:30] 2026-03-15 11:31:26,464 | INFO     | [monitor] control thread has ended
[2026-03-15 12:31:30] 2026-03-15 11:31:30,763 | INFO     | all workflow threads have been joined
[2026-03-15 12:31:30] 2026-03-15 11:31:30,764 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 12:31:30] 2026-03-15 11:31:30,764 | INFO     | traces error code: 0
[2026-03-15 12:31:30] 2026-03-15 11:31:30,764 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 12:31:30] 2026-03-15 11:31:30,812 [wrapper] ==== pilot stdout END ====
[2026-03-15 12:31:30] 2026-03-15 11:31:30,814 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 12:31:30] 2026-03-15 11:31:30,817 [wrapper] pilotpid: 433281
[2026-03-15 12:31:30] 2026-03-15 11:31:30,820 [wrapper] Pilot exit status: 0
[2026-03-15 12:31:30] 2026-03-15 11:31:30,827 [wrapper] pandaids: 7053674874
[2026-03-15 12:31:30] 2026-03-15 11:31:30,845 [wrapper] cleanup supervisor_pilot  443336 433282
[2026-03-15 12:31:30] 2026-03-15 11:31:30,847 [wrapper] Test setup, not cleaning
[2026-03-15 12:31:30] 2026-03-15 11:31:30,850 [wrapper] apfmon messages muted
[2026-03-15 12:31:30] 2026-03-15 11:31:30,853 [wrapper] ==== wrapper stdout END ====
[2026-03-15 12:31:30] 2026-03-15 11:31:30,855 [wrapper] ==== wrapper stderr END ====
[2026-03-15 12:31:30]  *** Error codes and diagnostics ***
[2026-03-15 12:31:30]     "exeErrorCode": 0,
[2026-03-15 12:31:30]     "exeErrorDiag": "",
[2026-03-15 12:31:30]     "pilotErrorCode": 0,
[2026-03-15 12:31:30]     "pilotErrorDiag": "",
[2026-03-15 12:31:30]  *** Listing of results directory ***
[2026-03-15 12:31:30] total 617808
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc    585013 Mar 14 20:45 pilot3.tar.gz
[2026-03-15 12:31:30] -rwx------ 1 boinc boinc     36322 Mar 14 20:45 runpilot2-wrapper.sh
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc      5111 Mar 14 20:50 queuedata.json
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc       100 Mar 15 11:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 12:31:30] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 11:04 run_atlas
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc       105 Mar 15 11:04 job.xml
[2026-03-15 12:31:30] -rw-r--r-- 2 boinc boinc 445048851 Mar 15 11:04 EVNT.46701403._001562.pool.root.1
[2026-03-15 12:31:30] -rw-r--r-- 2 boinc boinc    597539 Mar 15 11:04 input.tar.gz
[2026-03-15 12:31:30] drwxrwx--x 2 boinc boinc      4096 Mar 15 11:04 shared
[2026-03-15 12:31:30] -rw-r--r-- 2 boinc boinc     15845 Mar 15 11:04 start_atlas.sh
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc         0 Mar 15 11:04 boinc_setup_complete
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc      6197 Mar 15 11:04 init_data.xml
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc         0 Mar 15 11:04 boinc_lockfile
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc      2563 Mar 15 11:04 pandaJob.out
[2026-03-15 12:31:30] -rw------- 1 boinc boinc   1006481 Mar 15 11:05 agis_schedconf.cvmfs.json
[2026-03-15 12:31:30] -rw------- 1 boinc boinc   1511579 Mar 15 11:05 agis_ddmendpoints.agis.ALL.json
[2026-03-15 12:31:30] -rw------- 1 boinc boinc       420 Mar 15 11:05 workernode_map.json
[2026-03-15 12:31:30] drwx------ 5 boinc boinc      4096 Mar 15 11:05 pilot3
[2026-03-15 12:31:30] -rw------- 1 boinc boinc 181587311 Mar 15 12:30 HITS.48955010._051264.pool.root.1
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc       530 Mar 15 12:30 boinc_task_state.xml
[2026-03-15 12:31:30] -rw------- 1 boinc boinc      1025 Mar 15 12:30 memory_monitor_summary.json
[2026-03-15 12:31:30] -rw------- 1 boinc boinc    288085 Mar 15 12:30 log.48955010._051264.job.log.tgz.1
[2026-03-15 12:31:30] -rw------- 1 boinc boinc      6301 Mar 15 12:30 heartbeat.json
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc      8192 Mar 15 12:31 boinc_mmap_file
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc        27 Mar 15 12:31 wrapper_checkpoint.txt
[2026-03-15 12:31:30] -rw------- 1 boinc boinc        95 Mar 15 12:31 pilot_heartbeat.json
[2026-03-15 12:31:30] -rw------- 1 boinc boinc      6318 Mar 15 12:31 pilotlog.txt
[2026-03-15 12:31:30] -rw------- 1 boinc boinc    747601 Mar 15 12:31 log.48955010._051264.job.log.1
[2026-03-15 12:31:30] -rw------- 1 boinc boinc       357 Mar 15 12:31 output.list
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc       620 Mar 15 12:31 runtime_log
[2026-03-15 12:31:30] -rw------- 1 boinc boinc   1054720 Mar 15 12:31 result.tar.gz
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc      8901 Mar 15 12:31 runtime_log.err
[2026-03-15 12:31:30] -rw------- 1 boinc boinc       658 Mar 15 12:31 TWIMDm36jL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmQdrLDmPvUzQo.diag
[2026-03-15 12:31:30] -rw-r--r-- 1 boinc boinc      9915 Mar 15 12:31 stderr.txt
[2026-03-15 12:31:30] HITS file was successfully produced:
[2026-03-15 12:31:30] -rw------- 1 boinc boinc 181587311 Mar 15 12:30 shared/HITS.pool.root.1
[2026-03-15 12:31:30]  *** Contents of shared directory: ***
[2026-03-15 12:31:30] total 613592
[2026-03-15 12:31:30] -rw-r--r-- 2 boinc boinc 445048851 Mar 15 11:04 ATLAS.root_0
[2026-03-15 12:31:30] -rw-r--r-- 2 boinc boinc    597539 Mar 15 11:04 input.tar.gz
[2026-03-15 12:31:30] -rw-r--r-- 2 boinc boinc     15845 Mar 15 11:04 start_atlas.sh
[2026-03-15 12:31:30] -rw------- 1 boinc boinc 181587311 Mar 15 12:30 HITS.pool.root.1
[2026-03-15 12:31:30] -rw------- 1 boinc boinc   1054720 Mar 15 12:31 result.tar.gz
12:31:32 (429220): run_atlas exited; CPU time 14348.523936
12:31:32 (429220): called boinc_finish(0)

</stderr_txt>
]]>

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