Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:46:10 (795455): wrapper (7.7.26015): starting
10:46:10 (795455): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 10:46:10] Arguments: --nthreads 4
[2026-03-15 10:46:10] Threads: 4
[2026-03-15 10:46:10] Checking for CVMFS
[2026-03-15 10:46:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 10:46:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 10:46:10] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 10:46:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 10:46:11] 2.9.2.0 141980 25574 104748 157308 0 50 30801244 36864001 0 130560 0 13457779 99.987 955117 7686 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 10:46:11] CVMFS is ok
[2026-03-15 10:46:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 10:46:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 10:46:11] Further information can be found at the LHC@home message board.
[2026-03-15 10:46:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 10:46:11] Checking for apptainer binary...
[2026-03-15 10:46:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 10:46:11] Running /usr/bin/apptainer --version
[2026-03-15 10:46:11] apptainer version 1.4.1-1.1
[2026-03-15 10:46:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 10:46:11] magicA244a
[2026-03-15 10:46:11] apptainer works
[2026-03-15 10:46:11] Set ATHENA_PROC_NUMBER=4
[2026-03-15 10:46:11] Set ATHENA_CORE_NUMBER=4
[2026-03-15 10:46:11] Starting ATLAS job with PandaID=7047593496
[2026-03-15 10:46:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 11:48:36]  *** The last 200 lines of the pilot log: ***
[2026-03-15 11:48:36] 2026-03-15 10:48:06,013 | INFO     | collected zombie processes
[2026-03-15 11:48:36] 2026-03-15 10:48:06,013 | INFO     | will attempt to kill all subprocesses of pid=804061
[2026-03-15 11:48:36] 2026-03-15 10:48:06,055 | INFO     | process IDs to be killed: [804061] (in reverse order)
[2026-03-15 11:48:36] 2026-03-15 10:48:06,082 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 11:48:36] 2026-03-15 10:48:06,082 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 11:48:36] 2026-03-15 10:48:06,084 | INFO     | did not find any defunct processes belonging to 804061
[2026-03-15 11:48:36] 2026-03-15 10:48:06,085 | INFO     | did not find any defunct processes belonging to 804061
[2026-03-15 11:48:36] 2026-03-15 10:48:06,085 | INFO     | ready for new job
[2026-03-15 11:48:36] 2026-03-15 10:48:06,085 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 11:48:36] 2026-03-15 10:48:06,086 | INFO     | **************************************
[2026-03-15 11:48:36] 2026-03-15 10:48:06,086 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 11:48:36] 2026-03-15 10:48:06,086 | INFO     | **************************************
[2026-03-15 11:48:36] 2026-03-15 10:48:06,086 | INFO     | 
[2026-03-15 11:48:36] 2026-03-15 10:48:06,086 | INFO     | architecture information:
[2026-03-15 11:48:36] 2026-03-15 10:48:06,086 | INFO     | executing command: cat /etc/os-release
[2026-03-15 11:48:36] 2026-03-15 10:48:06,096 | INFO     | cat /etc/os-release:
[2026-03-15 11:48:36] NAME="CentOS Linux"
[2026-03-15 11:48:36] VERSION="7 (Core)"
[2026-03-15 11:48:36] ID="centos"
[2026-03-15 11:48:36] ID_LIKE="rhel fedora"
[2026-03-15 11:48:36] VERSION_ID="7"
[2026-03-15 11:48:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 11:48:36] ANSI_COLOR="0;31"
[2026-03-15 11:48:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 11:48:36] HOME_URL="https://www.centos.org/"
[2026-03-15 11:48:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 11:48:36] 
[2026-03-15 11:48:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 11:48:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 11:48:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 11:48:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 11:48:36] 
[2026-03-15 11:48:36] 2026-03-15 10:48:06,097 | INFO     | **************************************
[2026-03-15 11:48:36] 2026-03-15 10:48:06,600 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 11:48:36] 2026-03-15 10:48:06,613 | INFO     | sufficient remaining disk space (329409101824 B)
[2026-03-15 11:48:36] 2026-03-15 10:48:06,613 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 11:48:36] 2026-03-15 10:48:06,613 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 11:48:36] 2026-03-15 10:48:06,613 | INFO     | update_server=False
[2026-03-15 11:48:36] 2026-03-15 10:48:06,613 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 11:48:36] 2026-03-15 10:48:06,613 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 11:48:36] 2026-03-15 10:48:06,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 11:48:36] 2026-03-15 10:48:06,613 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 11:48:36] 2026-03-15 10:48:06,613 | INFO     | aborting loop
[2026-03-15 11:48:36] 2026-03-15 10:48:06,875 | INFO     | all data control threads have been joined
[2026-03-15 11:48:36] 2026-03-15 10:48:07,288 | INFO     | all job control threads have been joined
[2026-03-15 11:48:36] 2026-03-15 10:48:07,416 | INFO     | all payload control threads have been joined
[2026-03-15 11:48:36] 2026-03-15 10:48:07,428 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 11:48:36] 2026-03-15 10:48:07,619 | INFO     | [job] queue monitor thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:07,619 | INFO     | [job] retrieve thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:07,619 | INFO     | [job] job monitor thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:07,881 | INFO     | [data] control thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:08,108 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:08,123 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:08,123 | INFO     | [job] validate thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:08,132 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:08,293 | INFO     | [job] control thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:08,336 | INFO     | [payload] validate_post thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:08,341 | INFO     | [data] copytool_in thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:08,422 | INFO     | [payload] control thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:08,499 | INFO     | [payload] failed_post thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:09,433 | INFO     | [data] copytool_out thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:10,619 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:17,127 | INFO     | job.realtimelogging is not enabled
[2026-03-15 11:48:36] 2026-03-15 10:48:18,133 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 11:48:36] 2026-03-15 10:48:26,091 | INFO     | [monitor] cgroup control has ended
[2026-03-15 11:48:36] 2026-03-15 10:48:27,801 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140173518243648)>', '<ExcThread(monitor, started 140172867909376)>']
[2026-03-15 11:48:36] 2026-03-15 10:48:32,819 | INFO     | all workflow threads have been joined
[2026-03-15 11:48:36] 2026-03-15 10:48:32,819 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 11:48:36] 2026-03-15 10:48:32,820 | INFO     | traces error code: 0
[2026-03-15 11:48:36] 2026-03-15 10:48:32,820 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 11:48:36] 2026-03-15 10:48:36,201 | INFO     | PID=799562 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 11:48:36] 2026-03-15 10:48:36,201 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 11:48:36] 2026-03-15 10:48:36,201 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 11:48:36] 2026-03-15 10:48:36,201 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 11:48:36] 2026-03-15 10:48:36,201 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 11:48:36] 2026-03-15 10:48:36,201 | INFO     | [monitor] control thread has ended
[2026-03-15 11:48:36] 2026-03-15 10:48:36,251 [wrapper] ==== pilot stdout END ====
[2026-03-15 11:48:36] 2026-03-15 10:48:36,254 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 11:48:36] 2026-03-15 10:48:36,256 [wrapper] pilotpid: 799562
[2026-03-15 11:48:36] 2026-03-15 10:48:36,259 [wrapper] Pilot exit status: 0
[2026-03-15 11:48:36] 2026-03-15 10:48:36,267 [wrapper] pandaids: 7047593496
[2026-03-15 11:48:36] 2026-03-15 10:48:36,285 [wrapper] cleanup supervisor_pilot  809244 799563
[2026-03-15 11:48:36] 2026-03-15 10:48:36,287 [wrapper] Test setup, not cleaning
[2026-03-15 11:48:36] 2026-03-15 10:48:36,290 [wrapper] apfmon messages muted
[2026-03-15 11:48:36] 2026-03-15 10:48:36,293 [wrapper] ==== wrapper stdout END ====
[2026-03-15 11:48:36] 2026-03-15 10:48:36,295 [wrapper] ==== wrapper stderr END ====
[2026-03-15 11:48:36]  *** Error codes and diagnostics ***
[2026-03-15 11:48:36]     "exeErrorCode": 0,
[2026-03-15 11:48:36]     "exeErrorDiag": "",
[2026-03-15 11:48:36]     "pilotErrorCode": 0,
[2026-03-15 11:48:36]     "pilotErrorDiag": "",
[2026-03-15 11:48:36]  *** Listing of results directory ***
[2026-03-15 11:48:36] total 624684
[2026-03-15 11:48:36] -rwx------ 1 boinc boinc     36322 Mar 14 19:24 runpilot2-wrapper.sh
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc    585013 Mar 14 19:26 pilot3.tar.gz
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc      5111 Mar 14 19:28 queuedata.json
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc       100 Mar 15 10:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 11:48:36] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 10:46 run_atlas
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc       105 Mar 15 10:46 job.xml
[2026-03-15 11:48:36] -rw-r--r-- 2 boinc boinc 442562943 Mar 15 10:46 EVNT.46701403._002017.pool.root.1
[2026-03-15 11:48:36] -rw-r--r-- 2 boinc boinc    597531 Mar 15 10:46 input.tar.gz
[2026-03-15 11:48:36] -rw-r--r-- 2 boinc boinc     15845 Mar 15 10:46 start_atlas.sh
[2026-03-15 11:48:36] drwxrwx--x 2 boinc boinc      4096 Mar 15 10:46 shared
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc         0 Mar 15 10:46 boinc_setup_complete
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc      6438 Mar 15 10:46 init_data.xml
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc         0 Mar 15 10:46 boinc_lockfile
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc      2564 Mar 15 10:46 pandaJob.out
[2026-03-15 11:48:36] -rw------- 1 boinc boinc   1006481 Mar 15 10:46 agis_schedconf.cvmfs.json
[2026-03-15 11:48:36] -rw------- 1 boinc boinc   1511579 Mar 15 10:46 agis_ddmendpoints.agis.ALL.json
[2026-03-15 11:48:36] -rw------- 1 boinc boinc       426 Mar 15 10:46 workernode_map.json
[2026-03-15 11:48:36] drwx------ 5 boinc boinc      4096 Mar 15 10:46 pilot3
[2026-03-15 11:48:36] -rw------- 1 boinc boinc        95 Mar 15 11:47 pilot_heartbeat.json
[2026-03-15 11:48:36] -rw------- 1 boinc boinc 191568805 Mar 15 11:47 HITS.48955010._049526.pool.root.1
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc       530 Mar 15 11:47 boinc_task_state.xml
[2026-03-15 11:48:36] -rw------- 1 boinc boinc      1012 Mar 15 11:48 memory_monitor_summary.json
[2026-03-15 11:48:36] -rw------- 1 boinc boinc    250760 Mar 15 11:48 log.48955010._049526.job.log.tgz.1
[2026-03-15 11:48:36] -rw------- 1 boinc boinc      6310 Mar 15 11:48 heartbeat.json
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc        27 Mar 15 11:48 wrapper_checkpoint.txt
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc      8192 Mar 15 11:48 boinc_mmap_file
[2026-03-15 11:48:36] -rw------- 1 boinc boinc       746 Mar 15 11:48 pilotlog.txt
[2026-03-15 11:48:36] -rw------- 1 boinc boinc    557123 Mar 15 11:48 log.48955010._049526.job.log.1
[2026-03-15 11:48:36] -rw------- 1 boinc boinc       357 Mar 15 11:48 output.list
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc       620 Mar 15 11:48 runtime_log
[2026-03-15 11:48:36] -rw------- 1 boinc boinc    829440 Mar 15 11:48 result.tar.gz
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc      8916 Mar 15 11:48 runtime_log.err
[2026-03-15 11:48:36] -rw------- 1 boinc boinc       661 Mar 15 11:48 fiULDmwpiL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm64tLDmjPRkEm.diag
[2026-03-15 11:48:36] -rw-r--r-- 1 boinc boinc     10370 Mar 15 11:48 stderr.txt
[2026-03-15 11:48:36] HITS file was successfully produced:
[2026-03-15 11:48:36] -rw------- 1 boinc boinc 191568805 Mar 15 11:47 shared/HITS.pool.root.1
[2026-03-15 11:48:36]  *** Contents of shared directory: ***
[2026-03-15 11:48:36] total 620692
[2026-03-15 11:48:36] -rw-r--r-- 2 boinc boinc 442562943 Mar 15 10:46 ATLAS.root_0
[2026-03-15 11:48:36] -rw-r--r-- 2 boinc boinc    597531 Mar 15 10:46 input.tar.gz
[2026-03-15 11:48:36] -rw-r--r-- 2 boinc boinc     15845 Mar 15 10:46 start_atlas.sh
[2026-03-15 11:48:36] -rw------- 1 boinc boinc 191568805 Mar 15 11:47 HITS.pool.root.1
[2026-03-15 11:48:36] -rw------- 1 boinc boinc    829440 Mar 15 11:48 result.tar.gz
11:48:38 (795455): run_atlas exited; CPU time 13466.487452
11:48:38 (795455): called boinc_finish(0)

</stderr_txt>
]]>

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