Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:42:25 (1835510): wrapper (7.7.26015): starting
08:42:25 (1835510): wrapper: running run_atlas (--nthreads 2)
[2026-03-15 08:42:25] Arguments: --nthreads 2
[2026-03-15 08:42:25] Threads: 2
[2026-03-15 08:42:25] Checking for CVMFS
[2026-03-15 08:42:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 08:42:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 08:42:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 08:42:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 08:42:26] 2.9.2.0 12722 18546 62404 157306 0 49 32613627 36864001 0 130560 0 5348236 99.977 684698 6080 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 08:42:26] CVMFS is ok
[2026-03-15 08:42:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 08:42:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 08:42:26] Further information can be found at the LHC@home message board.
[2026-03-15 08:42:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 08:42:26] Checking for apptainer binary...
[2026-03-15 08:42:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 08:42:26] Running /usr/bin/apptainer --version
[2026-03-15 08:42:26] apptainer version 1.4.1-1.1
[2026-03-15 08:42:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 08:42:26] thA334a
[2026-03-15 08:42:26] apptainer works
[2026-03-15 08:42:26] Set ATHENA_PROC_NUMBER=2
[2026-03-15 08:42:26] Set ATHENA_CORE_NUMBER=2
[2026-03-15 08:42:26] Starting ATLAS job with PandaID=7047594448
[2026-03-15 08:42:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 10:36:04]  *** The last 200 lines of the pilot log: ***
[2026-03-15 10:36:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 10:36:04] HOME_URL="https://www.centos.org/"
[2026-03-15 10:36:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 10:36:04] 
[2026-03-15 10:36:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 10:36:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 10:36:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 10:36:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 10:36:04] 
[2026-03-15 10:36:04] 2026-03-15 09:35:32,372 | INFO     | **************************************
[2026-03-15 10:36:04] 2026-03-15 09:35:32,875 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 10:36:04] 2026-03-15 09:35:32,888 | INFO     | sufficient remaining disk space (491073306624 B)
[2026-03-15 10:36:04] 2026-03-15 09:35:32,888 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 10:36:04] 2026-03-15 09:35:32,888 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 10:36:04] 2026-03-15 09:35:32,888 | INFO     | update_server=False
[2026-03-15 10:36:04] 2026-03-15 09:35:32,888 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 10:36:04] 2026-03-15 09:35:32,888 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 10:36:04] 2026-03-15 09:35:32,888 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 10:36:04] 2026-03-15 09:35:33,009 | INFO     | all data control threads have been joined
[2026-03-15 10:36:04] 2026-03-15 09:35:33,894 | INFO     | [job] retrieve thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:33,894 | INFO     | [job] queue monitor thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:33,904 | INFO     | all job control threads have been joined
[2026-03-15 10:36:04] 2026-03-15 09:35:33,943 | INFO     | [job] validate thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:33,981 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:34,016 | INFO     | [data] control thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:34,107 | INFO     | [data] copytool_in thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:34,285 | INFO     | all payload control threads have been joined
[2026-03-15 10:36:04] 2026-03-15 09:35:34,352 | INFO     | [payload] failed_post thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:34,823 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:34,894 | INFO     | [data] copytool_out thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:34,908 | INFO     | [job] control thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:35,163 | INFO     | [payload] validate_post thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:35,291 | INFO     | [payload] control thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:35,353 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:35,469 | WARNING  | process 1843952 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 10:36:04] 2026-03-15 09:35:35,489 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 10:36:04] 2026-03-15 09:35:35,489 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 10:36:04] 2026-03-15 09:35:35,489 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-15 10:36:04] 2026-03-15 09:35:35,489 | WARNING  | maxPSS not found in memory monitor output
[2026-03-15 10:36:04] 2026-03-15 09:35:35,489 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7047594448/payload.stdout) since it has not been created yet
[2026-03-15 10:36:04] 2026-03-15 09:35:35,489 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 10:36:04] 2026-03-15 09:35:35,499 | INFO     | sufficient remaining disk space (491073306624 B)
[2026-03-15 10:36:04] 2026-03-15 09:35:35,499 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-15 10:36:04] 2026-03-15 09:35:35,499 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7047594448/HITS.48955010._049914.pool.root.1 since it does not exist
[2026-03-15 10:36:04] 2026-03-15 09:35:35,525 | INFO     | number of running child processes to parent process 1843952: 1
[2026-03-15 10:36:04] 2026-03-15 09:35:35,525 | INFO     | maximum number of monitored processes: 6
[2026-03-15 10:36:04] 2026-03-15 09:35:35,525 | INFO     | aborting job monitoring since job object (job id=7047594448) has expired
[2026-03-15 10:36:04] 2026-03-15 09:35:35,525 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 10:36:04] 2026-03-15 09:35:35,525 | INFO     | will abort loop
[2026-03-15 10:36:04] 2026-03-15 09:35:35,866 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 10:36:04] 2026-03-15 09:35:36,531 | INFO     | [job] job monitor thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:39,873 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:43,344 | INFO     | job.realtimelogging is not enabled
[2026-03-15 10:36:04] 2026-03-15 09:35:44,350 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 10:36:04] 2026-03-15 09:35:52,344 | INFO     | [monitor] cgroup control has ended
[2026-03-15 10:36:04] 2026-03-15 09:35:52,806 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139689966860096)>', '<ExcThread(monitor, started 139689474369280)>']
[2026-03-15 10:36:04] 2026-03-15 09:35:57,832 | INFO     | all workflow threads have been joined
[2026-03-15 10:36:04] 2026-03-15 09:35:57,832 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 10:36:04] 2026-03-15 09:35:57,833 | INFO     | traces error code: 0
[2026-03-15 10:36:04] 2026-03-15 09:35:57,833 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 10:36:04] 2026-03-15 09:36:03,971 | INFO     | PID=1839541 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 10:36:04] 2026-03-15 09:36:03,971 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 10:36:04] 2026-03-15 09:36:03,972 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 10:36:04] 2026-03-15 09:36:03,972 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 10:36:04] 2026-03-15 09:36:03,972 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 10:36:04] 2026-03-15 09:36:03,972 | CRITICAL | thread 'MainThread' is not alive
[2026-03-15 10:36:04] 2026-03-15 09:36:03,972 | INFO     | [monitor] control thread has ended
[2026-03-15 10:36:04] 2026-03-15 09:36:04,010 [wrapper] ==== pilot stdout END ====
[2026-03-15 10:36:04] 2026-03-15 09:36:04,013 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 10:36:04] 2026-03-15 09:36:04,016 [wrapper] pilotpid: 1839541
[2026-03-15 10:36:04] 2026-03-15 09:36:04,018 [wrapper] Pilot exit status: 0
[2026-03-15 10:36:04] 2026-03-15 09:36:04,024 [wrapper] pandaids: 7047594448
[2026-03-15 10:36:04] 2026-03-15 09:36:04,037 [wrapper] cleanup supervisor_pilot 1848842 1839542
[2026-03-15 10:36:04] 2026-03-15 09:36:04,039 [wrapper] Test setup, not cleaning
[2026-03-15 10:36:04] 2026-03-15 09:36:04,041 [wrapper] apfmon messages muted
[2026-03-15 10:36:04] 2026-03-15 09:36:04,043 [wrapper] ==== wrapper stdout END ====
[2026-03-15 10:36:04] 2026-03-15 09:36:04,045 [wrapper] ==== wrapper stderr END ====
[2026-03-15 10:36:04]  *** Error codes and diagnostics ***
[2026-03-15 10:36:04]     "exeErrorCode": 0,
[2026-03-15 10:36:04]     "exeErrorDiag": "",
[2026-03-15 10:36:04]     "pilotErrorCode": 0,
[2026-03-15 10:36:04]     "pilotErrorDiag": "",
[2026-03-15 10:36:04]  *** Listing of results directory ***
[2026-03-15 10:36:04] total 615584
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc    585013 Mar 14 19:20 pilot3.tar.gz
[2026-03-15 10:36:04] -rwx------ 1 boinc boinc     36322 Mar 14 19:22 runpilot2-wrapper.sh
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc      5111 Mar 14 19:23 queuedata.json
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc       100 Mar 15 08:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 10:36:04] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 08:42 run_atlas
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc       105 Mar 15 08:42 job.xml
[2026-03-15 10:36:04] -rw-r--r-- 2 boinc boinc 444739714 Mar 15 08:42 EVNT.46701403._002027.pool.root.1
[2026-03-15 10:36:04] -rw-r--r-- 2 boinc boinc    597526 Mar 15 08:42 input.tar.gz
[2026-03-15 10:36:04] -rw-r--r-- 2 boinc boinc     15845 Mar 15 08:42 start_atlas.sh
[2026-03-15 10:36:04] drwxrwx--x 2 boinc boinc      4096 Mar 15 08:42 shared
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc         0 Mar 15 08:42 boinc_setup_complete
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc      6206 Mar 15 08:42 init_data.xml
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc         0 Mar 15 08:42 boinc_lockfile
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc      2562 Mar 15 08:42 pandaJob.out
[2026-03-15 10:36:04] -rw------- 1 boinc boinc   1006481 Mar 15 08:42 agis_schedconf.cvmfs.json
[2026-03-15 10:36:04] -rw------- 1 boinc boinc   1511579 Mar 15 08:42 agis_ddmendpoints.agis.ALL.json
[2026-03-15 10:36:04] -rw------- 1 boinc boinc       426 Mar 15 08:42 workernode_map.json
[2026-03-15 10:36:04] drwx------ 5 boinc boinc      4096 Mar 15 08:42 pilot3
[2026-03-15 10:36:04] -rw------- 1 boinc boinc        95 Mar 15 10:35 pilot_heartbeat.json
[2026-03-15 10:36:04] -rw------- 1 boinc boinc 179246995 Mar 15 10:35 HITS.48955010._049914.pool.root.1
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc       530 Mar 15 10:35 boinc_task_state.xml
[2026-03-15 10:36:04] -rw------- 1 boinc boinc      1023 Mar 15 10:35 memory_monitor_summary.json
[2026-03-15 10:36:04] -rw------- 1 boinc boinc    249225 Mar 15 10:35 log.48955010._049914.job.log.tgz.1
[2026-03-15 10:36:04] -rw------- 1 boinc boinc      6301 Mar 15 10:35 heartbeat.json
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc      8192 Mar 15 10:35 boinc_mmap_file
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc        27 Mar 15 10:35 wrapper_checkpoint.txt
[2026-03-15 10:36:04] -rw------- 1 boinc boinc       817 Mar 15 10:36 pilotlog.txt
[2026-03-15 10:36:04] -rw------- 1 boinc boinc    976193 Mar 15 10:36 log.48955010._049914.job.log.1
[2026-03-15 10:36:04] -rw------- 1 boinc boinc       357 Mar 15 10:36 output.list
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc       620 Mar 15 10:36 runtime_log
[2026-03-15 10:36:04] -rw------- 1 boinc boinc   1239040 Mar 15 10:36 result.tar.gz
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc      8901 Mar 15 10:36 runtime_log.err
[2026-03-15 10:36:04] -rw------- 1 boinc boinc       658 Mar 15 10:36 nheKDmnniL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmAxtLDmSRWwxn.diag
[2026-03-15 10:36:04] -rw-r--r-- 1 boinc boinc     10383 Mar 15 10:36 stderr.txt
[2026-03-15 10:36:04] HITS file was successfully produced:
[2026-03-15 10:36:04] -rw------- 1 boinc boinc 179246995 Mar 15 10:35 shared/HITS.pool.root.1
[2026-03-15 10:36:04]  *** Contents of shared directory: ***
[2026-03-15 10:36:04] total 611188
[2026-03-15 10:36:04] -rw-r--r-- 2 boinc boinc 444739714 Mar 15 08:42 ATLAS.root_0
[2026-03-15 10:36:04] -rw-r--r-- 2 boinc boinc    597526 Mar 15 08:42 input.tar.gz
[2026-03-15 10:36:04] -rw-r--r-- 2 boinc boinc     15845 Mar 15 08:42 start_atlas.sh
[2026-03-15 10:36:04] -rw------- 1 boinc boinc 179246995 Mar 15 10:35 HITS.pool.root.1
[2026-03-15 10:36:04] -rw------- 1 boinc boinc   1239040 Mar 15 10:36 result.tar.gz
10:36:05 (1835510): run_atlas exited; CPU time 12943.690782
10:36:05 (1835510): called boinc_finish(0)

</stderr_txt>
]]>

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