Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:03:59 (126767): wrapper (7.7.26015): starting
08:03:59 (126767): wrapper: running run_atlas (--nthreads 3)
[2026-03-15 08:03:59] Arguments: --nthreads 3
[2026-03-15 08:03:59] Threads: 3
[2026-03-15 08:03:59] Checking for CVMFS
[2026-03-15 08:03:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 08:03:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 08:03:59] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 08:03:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 08:03:59] 2.9.2.0 3041 737 69960 157304 0 50 31130860 36864001 0 130560 0 354223 99.987 25824 17591 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 08:03:59] CVMFS is ok
[2026-03-15 08:03:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 08:03:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 08:03:59] Further information can be found at the LHC@home message board.
[2026-03-15 08:03:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 08:03:59] Checking for apptainer binary...
[2026-03-15 08:03:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 08:03:59] Running /usr/bin/apptainer --version
[2026-03-15 08:03:59] apptainer version 1.4.1-1.1
[2026-03-15 08:03:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 08:03:59] atlasA230
[2026-03-15 08:03:59] apptainer works
[2026-03-15 08:03:59] Set ATHENA_PROC_NUMBER=3
[2026-03-15 08:03:59] Set ATHENA_CORE_NUMBER=3
[2026-03-15 08:03:59] Starting ATLAS job with PandaID=7047463824
[2026-03-15 08:03:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 09:22:29]  *** The last 200 lines of the pilot log: ***
[2026-03-15 09:22:29] 2026-03-15 08:21:57,716 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 09:22:29] 2026-03-15 08:21:57,716 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 09:22:29] 2026-03-15 08:21:57,716 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 09:22:29] 2026-03-15 08:21:57,716 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 09:22:29] 2026-03-15 08:21:57,716 | INFO     | job 7047463824 has completed (purged errors)
[2026-03-15 09:22:29] 2026-03-15 08:21:57,716 | INFO     | overall cleanup function is called
[2026-03-15 09:22:29] 2026-03-15 08:21:58,723 | INFO     | --- collectZombieJob: --- 10, [135232]
[2026-03-15 09:22:29] 2026-03-15 08:21:58,723 | INFO     | zombie collector waiting for pid 135232
[2026-03-15 09:22:29] 2026-03-15 08:21:58,723 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 09:22:29] 2026-03-15 08:21:58,723 | INFO     | collected zombie processes
[2026-03-15 09:22:29] 2026-03-15 08:21:58,723 | INFO     | will attempt to kill all subprocesses of pid=135232
[2026-03-15 09:22:29] 2026-03-15 08:21:58,765 | INFO     | process IDs to be killed: [135232] (in reverse order)
[2026-03-15 09:22:29] 2026-03-15 08:21:58,789 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 09:22:29] 2026-03-15 08:21:58,789 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 09:22:29] 2026-03-15 08:21:58,790 | INFO     | did not find any defunct processes belonging to 135232
[2026-03-15 09:22:29] 2026-03-15 08:21:58,791 | INFO     | did not find any defunct processes belonging to 135232
[2026-03-15 09:22:29] 2026-03-15 08:21:58,791 | INFO     | ready for new job
[2026-03-15 09:22:29] 2026-03-15 08:21:58,791 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 09:22:29] 2026-03-15 08:21:58,792 | INFO     | **************************************
[2026-03-15 09:22:29] 2026-03-15 08:21:58,792 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 09:22:29] 2026-03-15 08:21:58,792 | INFO     | **************************************
[2026-03-15 09:22:29] 2026-03-15 08:21:58,792 | INFO     | 
[2026-03-15 09:22:29] 2026-03-15 08:21:58,792 | INFO     | architecture information:
[2026-03-15 09:22:29] 2026-03-15 08:21:58,792 | INFO     | executing command: cat /etc/os-release
[2026-03-15 09:22:29] 2026-03-15 08:21:58,801 | INFO     | cat /etc/os-release:
[2026-03-15 09:22:29] NAME="CentOS Linux"
[2026-03-15 09:22:29] VERSION="7 (Core)"
[2026-03-15 09:22:29] ID="centos"
[2026-03-15 09:22:29] ID_LIKE="rhel fedora"
[2026-03-15 09:22:29] VERSION_ID="7"
[2026-03-15 09:22:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 09:22:29] ANSI_COLOR="0;31"
[2026-03-15 09:22:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 09:22:29] HOME_URL="https://www.centos.org/"
[2026-03-15 09:22:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 09:22:29] 
[2026-03-15 09:22:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 09:22:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 09:22:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 09:22:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 09:22:29] 
[2026-03-15 09:22:29] 2026-03-15 08:21:58,801 | INFO     | **************************************
[2026-03-15 09:22:29] 2026-03-15 08:21:58,881 | WARNING  | process 135232 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 09:22:29] 2026-03-15 08:21:58,909 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 09:22:29] 2026-03-15 08:21:58,945 | INFO     | number of running child processes to parent process 135232: 1
[2026-03-15 09:22:29] 2026-03-15 08:21:58,945 | INFO     | maximum number of monitored processes: 6
[2026-03-15 09:22:29] 2026-03-15 08:21:58,945 | INFO     | aborting job monitoring since job object (job id=7047463824) has expired
[2026-03-15 09:22:29] 2026-03-15 08:21:59,305 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 09:22:29] 2026-03-15 08:21:59,317 | INFO     | sufficient remaining disk space (328419246080 B)
[2026-03-15 09:22:29] 2026-03-15 08:21:59,317 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 09:22:29] 2026-03-15 08:21:59,317 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 09:22:29] 2026-03-15 08:21:59,317 | INFO     | update_server=False
[2026-03-15 09:22:29] 2026-03-15 08:21:59,317 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 09:22:29] 2026-03-15 08:21:59,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 09:22:29] 2026-03-15 08:21:59,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 09:22:29] 2026-03-15 08:21:59,317 | INFO     | will abort loop
[2026-03-15 09:22:29] 2026-03-15 08:21:59,348 | INFO     | all payload control threads have been joined
[2026-03-15 09:22:29] 2026-03-15 08:22:00,201 | INFO     | all job control threads have been joined
[2026-03-15 09:22:29] 2026-03-15 08:22:00,214 | INFO     | all data control threads have been joined
[2026-03-15 09:22:29] 2026-03-15 08:22:00,322 | INFO     | [job] retrieve thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:00,323 | INFO     | [job] job monitor thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:00,354 | INFO     | [payload] control thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:00,378 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:00,447 | INFO     | [data] copytool_in thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:00,561 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:01,019 | INFO     | [payload] failed_post thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:01,206 | INFO     | [job] control thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:01,220 | INFO     | [data] control thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:01,323 | INFO     | [data] copytool_out thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:01,346 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:01,582 | INFO     | [payload] validate_post thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:01,709 | INFO     | [job] validate thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:01,793 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:02,131 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 09:22:29] 2026-03-15 08:22:02,282 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 09:22:29] 2026-03-15 08:22:03,287 | INFO     | [job] queue monitor thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:06,138 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 09:22:29] 2026-03-15 08:22:13,619 | INFO     | [monitor] cgroup control has ended
[2026-03-15 09:22:29] 2026-03-15 08:22:14,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140015281903424)>', '<ExcThread(monitor, started 140014641993472)>']
[2026-03-15 09:22:29] 2026-03-15 08:22:19,849 | INFO     | all workflow threads have been joined
[2026-03-15 09:22:29] 2026-03-15 08:22:19,849 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 09:22:29] 2026-03-15 08:22:19,849 | INFO     | traces error code: 0
[2026-03-15 09:22:29] 2026-03-15 08:22:19,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 09:22:29] 2026-03-15 08:22:29,227 | INFO     | PID=130812 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 09:22:29] 2026-03-15 08:22:29,227 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 09:22:29] 2026-03-15 08:22:29,227 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 09:22:29] 2026-03-15 08:22:29,227 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 09:22:29] 2026-03-15 08:22:29,227 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 09:22:29] 2026-03-15 08:22:29,227 | CRITICAL | thread 'MainThread' is not alive
[2026-03-15 09:22:29] 2026-03-15 08:22:29,227 | INFO     | [monitor] control thread has ended
[2026-03-15 09:22:29] 2026-03-15 08:22:29,273 [wrapper] ==== pilot stdout END ====
[2026-03-15 09:22:29] 2026-03-15 08:22:29,276 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 09:22:29] 2026-03-15 08:22:29,278 [wrapper] pilotpid: 130812
[2026-03-15 09:22:29] 2026-03-15 08:22:29,281 [wrapper] Pilot exit status: 0
[2026-03-15 09:22:29] 2026-03-15 08:22:29,287 [wrapper] pandaids: 7047463824
[2026-03-15 09:22:29] 2026-03-15 08:22:29,303 [wrapper] cleanup supervisor_pilot  140368 130813
[2026-03-15 09:22:29] 2026-03-15 08:22:29,305 [wrapper] Test setup, not cleaning
[2026-03-15 09:22:29] 2026-03-15 08:22:29,307 [wrapper] apfmon messages muted
[2026-03-15 09:22:29] 2026-03-15 08:22:29,309 [wrapper] ==== wrapper stdout END ====
[2026-03-15 09:22:29] 2026-03-15 08:22:29,311 [wrapper] ==== wrapper stderr END ====
[2026-03-15 09:22:29]  *** Error codes and diagnostics ***
[2026-03-15 09:22:29]     "exeErrorCode": 0,
[2026-03-15 09:22:29]     "exeErrorDiag": "",
[2026-03-15 09:22:29]     "pilotErrorCode": 0,
[2026-03-15 09:22:29]     "pilotErrorDiag": "",
[2026-03-15 09:22:29]  *** Listing of results directory ***
[2026-03-15 09:22:29] total 613336
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc    585013 Mar 14 17:40 pilot3.tar.gz
[2026-03-15 09:22:29] -rwx------ 1 boinc boinc     36322 Mar 14 17:45 runpilot2-wrapper.sh
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc      5111 Mar 14 17:48 queuedata.json
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc       100 Mar 15 08:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 09:22:29] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 08:03 run_atlas
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc       105 Mar 15 08:03 job.xml
[2026-03-15 09:22:29] -rw-r--r-- 2 boinc boinc 436373182 Mar 15 08:03 EVNT.46701403._001987.pool.root.1
[2026-03-15 09:22:29] -rw-r--r-- 2 boinc boinc    597533 Mar 15 08:03 input.tar.gz
[2026-03-15 09:22:29] -rw-r--r-- 2 boinc boinc     15845 Mar 15 08:03 start_atlas.sh
[2026-03-15 09:22:29] drwxrwx--x 2 boinc boinc      4096 Mar 15 08:03 shared
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc         0 Mar 15 08:03 boinc_setup_complete
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc      6441 Mar 15 08:03 init_data.xml
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc         0 Mar 15 08:03 boinc_lockfile
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc      2562 Mar 15 08:03 pandaJob.out
[2026-03-15 09:22:29] -rw------- 1 boinc boinc   1006481 Mar 15 08:04 agis_schedconf.cvmfs.json
[2026-03-15 09:22:29] -rw------- 1 boinc boinc   1511579 Mar 15 08:04 agis_ddmendpoints.agis.ALL.json
[2026-03-15 09:22:29] -rw------- 1 boinc boinc       430 Mar 15 08:04 workernode_map.json
[2026-03-15 09:22:29] drwx------ 5 boinc boinc      4096 Mar 15 08:04 pilot3
[2026-03-15 09:22:29] -rw------- 1 boinc boinc 185914662 Mar 15 09:21 HITS.48955010._048100.pool.root.1
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc       530 Mar 15 09:21 boinc_task_state.xml
[2026-03-15 09:22:29] -rw------- 1 boinc boinc      1014 Mar 15 09:21 memory_monitor_summary.json
[2026-03-15 09:22:29] -rw------- 1 boinc boinc    234182 Mar 15 09:21 log.48955010._048100.job.log.tgz.1
[2026-03-15 09:22:29] -rw------- 1 boinc boinc      6313 Mar 15 09:21 heartbeat.json
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc        27 Mar 15 09:22 wrapper_checkpoint.txt
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc      8192 Mar 15 09:22 boinc_mmap_file
[2026-03-15 09:22:29] -rw------- 1 boinc boinc       816 Mar 15 09:22 pilotlog.txt
[2026-03-15 09:22:29] -rw------- 1 boinc boinc        95 Mar 15 09:22 pilot_heartbeat.json
[2026-03-15 09:22:29] -rw------- 1 boinc boinc    687323 Mar 15 09:22 log.48955010._048100.job.log.1
[2026-03-15 09:22:29] -rw------- 1 boinc boinc       357 Mar 15 09:22 output.list
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc       620 Mar 15 09:22 runtime_log
[2026-03-15 09:22:29] -rw------- 1 boinc boinc    942080 Mar 15 09:22 result.tar.gz
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc      8911 Mar 15 09:22 runtime_log.err
[2026-03-15 09:22:29] -rw------- 1 boinc boinc       660 Mar 15 09:22 9duMDm1HhL9n9Rq4apOajLDm4fhM0noT9bVooX4SDm65qLDmx7aZHo.diag
[2026-03-15 09:22:29] -rw-r--r-- 1 boinc boinc     11921 Mar 15 09:22 stderr.txt
[2026-03-15 09:22:29] HITS file was successfully produced:
[2026-03-15 09:22:29] -rw------- 1 boinc boinc 185914662 Mar 15 09:21 shared/HITS.pool.root.1
[2026-03-15 09:22:29]  *** Contents of shared directory: ***
[2026-03-15 09:22:29] total 609236
[2026-03-15 09:22:29] -rw-r--r-- 2 boinc boinc 436373182 Mar 15 08:03 ATLAS.root_0
[2026-03-15 09:22:29] -rw-r--r-- 2 boinc boinc    597533 Mar 15 08:03 input.tar.gz
[2026-03-15 09:22:29] -rw-r--r-- 2 boinc boinc     15845 Mar 15 08:03 start_atlas.sh
[2026-03-15 09:22:29] -rw------- 1 boinc boinc 185914662 Mar 15 09:21 HITS.pool.root.1
[2026-03-15 09:22:29] -rw------- 1 boinc boinc    942080 Mar 15 09:22 result.tar.gz
09:22:30 (126767): run_atlas exited; CPU time 13044.502441
09:22:30 (126767): called boinc_finish(0)

</stderr_txt>
]]>

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