Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:01:53 (579396): wrapper (7.7.26015): starting
08:01:53 (579396): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 08:01:53] Arguments: --nthreads 4
[2026-03-15 08:01:53] Threads: 4
[2026-03-15 08:01:53] Checking for CVMFS
[2026-03-15 08:01:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 08:01:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 08:01:53] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 08:01:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 08:01:53] 2.9.2.0 16149 25398 104728 157304 2 50 31033291 36864001 0 130560 0 13570591 99.987 957299 13578 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 08:01:53] CVMFS is ok
[2026-03-15 08:01:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 08:01:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 08:01:53] Further information can be found at the LHC@home message board.
[2026-03-15 08:01:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 08:01:53] Checking for apptainer binary...
[2026-03-15 08:01:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 08:01:53] Running /usr/bin/apptainer --version
[2026-03-15 08:01:53] apptainer version 1.4.1-1.1
[2026-03-15 08:01:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 08:01:53] thA369a
[2026-03-15 08:01:53] apptainer works
[2026-03-15 08:01:53] Set ATHENA_PROC_NUMBER=4
[2026-03-15 08:01:53] Set ATHENA_CORE_NUMBER=4
[2026-03-15 08:01:53] Starting ATLAS job with PandaID=7047331646
[2026-03-15 08:01:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 09:04:12]  *** The last 200 lines of the pilot log: ***
[2026-03-15 09:04:12] 2026-03-15 08:03:39,741 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,741 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,741 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,741 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,741 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,741 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | job 7047331646 has completed (purged errors)
[2026-03-15 09:04:12] 2026-03-15 08:03:39,742 | INFO     | overall cleanup function is called
[2026-03-15 09:04:12] 2026-03-15 08:03:40,745 | INFO     | --- collectZombieJob: --- 10, [588013]
[2026-03-15 09:04:12] 2026-03-15 08:03:40,745 | INFO     | zombie collector waiting for pid 588013
[2026-03-15 09:04:12] 2026-03-15 08:03:40,745 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 09:04:12] 2026-03-15 08:03:40,745 | INFO     | collected zombie processes
[2026-03-15 09:04:12] 2026-03-15 08:03:40,745 | INFO     | will attempt to kill all subprocesses of pid=588013
[2026-03-15 09:04:12] 2026-03-15 08:03:40,788 | INFO     | process IDs to be killed: [588013] (in reverse order)
[2026-03-15 09:04:12] 2026-03-15 08:03:40,815 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 09:04:12] 2026-03-15 08:03:40,816 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 09:04:12] 2026-03-15 08:03:40,817 | INFO     | did not find any defunct processes belonging to 588013
[2026-03-15 09:04:12] 2026-03-15 08:03:40,818 | INFO     | did not find any defunct processes belonging to 588013
[2026-03-15 09:04:12] 2026-03-15 08:03:40,818 | INFO     | ready for new job
[2026-03-15 09:04:12] 2026-03-15 08:03:40,818 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 09:04:12] 2026-03-15 08:03:40,819 | INFO     | **************************************
[2026-03-15 09:04:12] 2026-03-15 08:03:40,819 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 09:04:12] 2026-03-15 08:03:40,819 | INFO     | **************************************
[2026-03-15 09:04:12] 2026-03-15 08:03:40,819 | INFO     | 
[2026-03-15 09:04:12] 2026-03-15 08:03:40,819 | INFO     | architecture information:
[2026-03-15 09:04:12] 2026-03-15 08:03:40,819 | INFO     | executing command: cat /etc/os-release
[2026-03-15 09:04:12] 2026-03-15 08:03:40,830 | INFO     | cat /etc/os-release:
[2026-03-15 09:04:12] NAME="CentOS Linux"
[2026-03-15 09:04:12] VERSION="7 (Core)"
[2026-03-15 09:04:12] ID="centos"
[2026-03-15 09:04:12] ID_LIKE="rhel fedora"
[2026-03-15 09:04:12] VERSION_ID="7"
[2026-03-15 09:04:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 09:04:12] ANSI_COLOR="0;31"
[2026-03-15 09:04:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 09:04:12] HOME_URL="https://www.centos.org/"
[2026-03-15 09:04:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 09:04:12] 
[2026-03-15 09:04:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 09:04:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 09:04:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 09:04:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 09:04:12] 
[2026-03-15 09:04:12] 2026-03-15 08:03:40,830 | INFO     | **************************************
[2026-03-15 09:04:12] 2026-03-15 08:03:41,333 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 09:04:12] 2026-03-15 08:03:41,348 | INFO     | sufficient remaining disk space (227544137728 B)
[2026-03-15 09:04:12] 2026-03-15 08:03:41,348 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 09:04:12] 2026-03-15 08:03:41,348 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 09:04:12] 2026-03-15 08:03:41,348 | INFO     | update_server=False
[2026-03-15 09:04:12] 2026-03-15 08:03:41,348 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 09:04:12] 2026-03-15 08:03:41,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 09:04:12] 2026-03-15 08:03:41,348 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 09:04:12] 2026-03-15 08:03:41,349 | INFO     | aborting loop
[2026-03-15 09:04:12] 2026-03-15 08:03:41,349 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 09:04:12] 2026-03-15 08:03:41,449 | INFO     | all job control threads have been joined
[2026-03-15 09:04:12] 2026-03-15 08:03:41,951 | INFO     | all data control threads have been joined
[2026-03-15 09:04:12] 2026-03-15 08:03:42,354 | INFO     | [job] retrieve thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:42,354 | INFO     | [job] queue monitor thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:42,354 | INFO     | [job] job monitor thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:42,454 | INFO     | [job] control thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:42,573 | INFO     | all payload control threads have been joined
[2026-03-15 09:04:12] 2026-03-15 08:03:42,676 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 09:04:12] 2026-03-15 08:03:42,956 | INFO     | [data] control thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:43,035 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:43,225 | INFO     | job.realtimelogging is not enabled
[2026-03-15 09:04:12] 2026-03-15 08:03:43,385 | INFO     | [payload] failed_post thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:43,462 | INFO     | [job] validate thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:43,481 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:43,506 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:43,578 | INFO     | [payload] control thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:43,687 | INFO     | [data] copytool_in thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:43,911 | INFO     | [payload] validate_post thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:44,230 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:44,683 | INFO     | [data] copytool_out thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:03:45,355 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 09:04:12] 2026-03-15 08:04:07,633 | INFO     | [monitor] cgroup control has ended
[2026-03-15 09:04:12] 2026-03-15 08:04:07,698 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140538364659520)>', '<ExcThread(monitor, started 140537420044032)>']
[2026-03-15 09:04:12] 2026-03-15 08:04:11,039 | INFO     | PID=583505 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 09:04:12] 2026-03-15 08:04:11,039 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 09:04:12] 2026-03-15 08:04:11,039 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 09:04:12] 2026-03-15 08:04:11,040 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 09:04:12] 2026-03-15 08:04:11,040 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 09:04:12] 2026-03-15 08:04:11,040 | INFO     | [monitor] control thread has ended
[2026-03-15 09:04:12] 2026-03-15 08:04:12,723 | INFO     | all workflow threads have been joined
[2026-03-15 09:04:12] 2026-03-15 08:04:12,724 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 09:04:12] 2026-03-15 08:04:12,725 | INFO     | traces error code: 0
[2026-03-15 09:04:12] 2026-03-15 08:04:12,725 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 09:04:12] 2026-03-15 08:04:12,778 [wrapper] ==== pilot stdout END ====
[2026-03-15 09:04:12] 2026-03-15 08:04:12,781 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 09:04:12] 2026-03-15 08:04:12,783 [wrapper] pilotpid: 583505
[2026-03-15 09:04:12] 2026-03-15 08:04:12,786 [wrapper] Pilot exit status: 0
[2026-03-15 09:04:12] 2026-03-15 08:04:12,794 [wrapper] pandaids: 7047331646
[2026-03-15 09:04:12] 2026-03-15 08:04:12,812 [wrapper] cleanup supervisor_pilot  593126 583506
[2026-03-15 09:04:12] 2026-03-15 08:04:12,814 [wrapper] Test setup, not cleaning
[2026-03-15 09:04:12] 2026-03-15 08:04:12,817 [wrapper] apfmon messages muted
[2026-03-15 09:04:12] 2026-03-15 08:04:12,819 [wrapper] ==== wrapper stdout END ====
[2026-03-15 09:04:12] 2026-03-15 08:04:12,822 [wrapper] ==== wrapper stderr END ====
[2026-03-15 09:04:12]  *** Error codes and diagnostics ***
[2026-03-15 09:04:12]     "exeErrorCode": 0,
[2026-03-15 09:04:12]     "exeErrorDiag": "",
[2026-03-15 09:04:12]     "pilotErrorCode": 0,
[2026-03-15 09:04:12]     "pilotErrorDiag": "",
[2026-03-15 09:04:12]  *** Listing of results directory ***
[2026-03-15 09:04:12] total 621120
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc    585013 Mar 14 17:40 pilot3.tar.gz
[2026-03-15 09:04:12] -rwx------ 1 boinc boinc     36322 Mar 14 17:44 runpilot2-wrapper.sh
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc      5111 Mar 14 17:48 queuedata.json
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc       100 Mar 15 08:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 09:04:12] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 08:01 run_atlas
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc       105 Mar 15 08:01 job.xml
[2026-03-15 09:04:12] -rw-r--r-- 2 boinc boinc 439310555 Mar 15 08:01 EVNT.46701403._001964.pool.root.1
[2026-03-15 09:04:12] drwxrwx--x 2 boinc boinc      4096 Mar 15 08:01 shared
[2026-03-15 09:04:12] -rw-r--r-- 2 boinc boinc    597530 Mar 15 08:01 input.tar.gz
[2026-03-15 09:04:12] -rw-r--r-- 2 boinc boinc     15845 Mar 15 08:01 start_atlas.sh
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc         0 Mar 15 08:01 boinc_setup_complete
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc      6443 Mar 15 08:01 init_data.xml
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc         0 Mar 15 08:01 boinc_lockfile
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc      2565 Mar 15 08:01 pandaJob.out
[2026-03-15 09:04:12] -rw------- 1 boinc boinc   1006481 Mar 15 08:02 agis_schedconf.cvmfs.json
[2026-03-15 09:04:12] -rw------- 1 boinc boinc   1511579 Mar 15 08:02 agis_ddmendpoints.agis.ALL.json
[2026-03-15 09:04:12] -rw------- 1 boinc boinc       424 Mar 15 08:02 workernode_map.json
[2026-03-15 09:04:12] drwx------ 5 boinc boinc      4096 Mar 15 08:02 pilot3
[2026-03-15 09:04:12] -rw------- 1 boinc boinc 191124468 Mar 15 09:03 HITS.48955010._046962.pool.root.1
[2026-03-15 09:04:12] -rw------- 1 boinc boinc        95 Mar 15 09:03 pilot_heartbeat.json
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc       530 Mar 15 09:03 boinc_task_state.xml
[2026-03-15 09:04:12] -rw------- 1 boinc boinc      1020 Mar 15 09:03 memory_monitor_summary.json
[2026-03-15 09:04:12] -rw------- 1 boinc boinc    273638 Mar 15 09:03 log.48955010._046962.job.log.tgz.1
[2026-03-15 09:04:12] -rw------- 1 boinc boinc      6307 Mar 15 09:03 heartbeat.json
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc        27 Mar 15 09:03 wrapper_checkpoint.txt
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc      8192 Mar 15 09:03 boinc_mmap_file
[2026-03-15 09:04:12] -rw------- 1 boinc boinc      4819 Mar 15 09:04 pilotlog.txt
[2026-03-15 09:04:12] -rw------- 1 boinc boinc    555334 Mar 15 09:04 log.48955010._046962.job.log.1
[2026-03-15 09:04:12] -rw------- 1 boinc boinc       357 Mar 15 09:04 output.list
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc       620 Mar 15 09:04 runtime_log
[2026-03-15 09:04:12] -rw------- 1 boinc boinc    849920 Mar 15 09:04 result.tar.gz
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc      8901 Mar 15 09:04 runtime_log.err
[2026-03-15 09:04:12] -rw------- 1 boinc boinc       658 Mar 15 09:04 BeNNDmVHhL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmb2qLDm4BA7om.diag
[2026-03-15 09:04:12] -rw-r--r-- 1 boinc boinc     12822 Mar 15 09:04 stderr.txt
[2026-03-15 09:04:12] HITS file was successfully produced:
[2026-03-15 09:04:12] -rw------- 1 boinc boinc 191124468 Mar 15 09:03 shared/HITS.pool.root.1
[2026-03-15 09:04:12]  *** Contents of shared directory: ***
[2026-03-15 09:04:12] total 617104
[2026-03-15 09:04:12] -rw-r--r-- 2 boinc boinc 439310555 Mar 15 08:01 ATLAS.root_0
[2026-03-15 09:04:12] -rw-r--r-- 2 boinc boinc    597530 Mar 15 08:01 input.tar.gz
[2026-03-15 09:04:12] -rw-r--r-- 2 boinc boinc     15845 Mar 15 08:01 start_atlas.sh
[2026-03-15 09:04:12] -rw------- 1 boinc boinc 191124468 Mar 15 09:03 HITS.pool.root.1
[2026-03-15 09:04:12] -rw------- 1 boinc boinc    849920 Mar 15 09:04 result.tar.gz
09:04:14 (579396): run_atlas exited; CPU time 13441.176095
09:04:14 (579396): called boinc_finish(0)

</stderr_txt>
]]>

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