Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:08:47 (720726): wrapper (7.7.26015): starting
08:08:47 (720726): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 08:08:47] Arguments: --nthreads 4
[2026-03-15 08:08:47] Threads: 4
[2026-03-15 08:08:47] Checking for CVMFS
[2026-03-15 08:08:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 08:08:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 08:08:47] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 08:08:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 08:08:47] 2.9.2.0 49711 25522 106876 157305 1 49 27286426 36864000 0 130560 0 13494852 99.986 958114 13199 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 08:08:47] CVMFS is ok
[2026-03-15 08:08:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 08:08:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 08:08:47] Further information can be found at the LHC@home message board.
[2026-03-15 08:08:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 08:08:47] Checking for apptainer binary...
[2026-03-15 08:08:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 08:08:47] Running /usr/bin/apptainer --version
[2026-03-15 08:08:47] apptainer version 1.4.1-1.1
[2026-03-15 08:08:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 08:08:48] thA317a
[2026-03-15 08:08:48] apptainer works
[2026-03-15 08:08:48] Set ATHENA_PROC_NUMBER=4
[2026-03-15 08:08:48] Set ATHENA_CORE_NUMBER=4
[2026-03-15 08:08:48] Starting ATLAS job with PandaID=7047420162
[2026-03-15 08:08:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 09:09:10]  *** The last 200 lines of the pilot log: ***
[2026-03-15 09:09:10] 2026-03-15 08:08:06,027 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 09:09:10] 2026-03-15 08:08:06,027 | INFO     | job 7047420162 has completed (purged errors)
[2026-03-15 09:09:10] 2026-03-15 08:08:06,027 | INFO     | overall cleanup function is called
[2026-03-15 09:09:10] 2026-03-15 08:08:07,033 | INFO     | --- collectZombieJob: --- 10, [729347]
[2026-03-15 09:09:10] 2026-03-15 08:08:07,033 | INFO     | zombie collector waiting for pid 729347
[2026-03-15 09:09:10] 2026-03-15 08:08:07,033 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 09:09:10] 2026-03-15 08:08:07,033 | INFO     | collected zombie processes
[2026-03-15 09:09:10] 2026-03-15 08:08:07,033 | INFO     | will attempt to kill all subprocesses of pid=729347
[2026-03-15 09:09:10] 2026-03-15 08:08:07,095 | INFO     | process IDs to be killed: [729347] (in reverse order)
[2026-03-15 09:09:10] 2026-03-15 08:08:07,127 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 09:09:10] 2026-03-15 08:08:07,127 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 09:09:10] 2026-03-15 08:08:07,129 | INFO     | did not find any defunct processes belonging to 729347
[2026-03-15 09:09:10] 2026-03-15 08:08:07,131 | INFO     | did not find any defunct processes belonging to 729347
[2026-03-15 09:09:10] 2026-03-15 08:08:07,131 | INFO     | ready for new job
[2026-03-15 09:09:10] 2026-03-15 08:08:07,131 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 09:09:10] 2026-03-15 08:08:07,132 | INFO     | **************************************
[2026-03-15 09:09:10] 2026-03-15 08:08:07,132 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 09:09:10] 2026-03-15 08:08:07,132 | INFO     | **************************************
[2026-03-15 09:09:10] 2026-03-15 08:08:07,132 | INFO     | 
[2026-03-15 09:09:10] 2026-03-15 08:08:07,132 | INFO     | architecture information:
[2026-03-15 09:09:10] 2026-03-15 08:08:07,132 | INFO     | executing command: cat /etc/os-release
[2026-03-15 09:09:10] 2026-03-15 08:08:07,143 | INFO     | cat /etc/os-release:
[2026-03-15 09:09:10] NAME="CentOS Linux"
[2026-03-15 09:09:10] VERSION="7 (Core)"
[2026-03-15 09:09:10] ID="centos"
[2026-03-15 09:09:10] ID_LIKE="rhel fedora"
[2026-03-15 09:09:10] VERSION_ID="7"
[2026-03-15 09:09:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 09:09:10] ANSI_COLOR="0;31"
[2026-03-15 09:09:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 09:09:10] HOME_URL="https://www.centos.org/"
[2026-03-15 09:09:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 09:09:10] 
[2026-03-15 09:09:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 09:09:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 09:09:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 09:09:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 09:09:10] 
[2026-03-15 09:09:10] 2026-03-15 08:08:07,143 | INFO     | **************************************
[2026-03-15 09:09:10] 2026-03-15 08:08:07,646 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 09:09:10] 2026-03-15 08:08:07,659 | INFO     | sufficient remaining disk space (231846445056 B)
[2026-03-15 09:09:10] 2026-03-15 08:08:07,659 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 09:09:10] 2026-03-15 08:08:07,660 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 09:09:10] 2026-03-15 08:08:07,660 | INFO     | update_server=False
[2026-03-15 09:09:10] 2026-03-15 08:08:07,660 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 09:09:10] 2026-03-15 08:08:07,660 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-15 09:09:10] 2026-03-15 08:08:07,660 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 09:09:10] 2026-03-15 08:08:07,660 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 09:09:10] 2026-03-15 08:08:07,660 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 09:09:10] 2026-03-15 08:08:07,660 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 09:09:10] 2026-03-15 08:08:07,660 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 09:09:10] 2026-03-15 08:08:07,669 | INFO     | all data control threads have been joined
[2026-03-15 09:09:10] 2026-03-15 08:08:07,765 | INFO     | all job control threads have been joined
[2026-03-15 09:09:10] 2026-03-15 08:08:08,129 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 09:09:10] 2026-03-15 08:08:08,130 | INFO     | aborting loop
[2026-03-15 09:09:10] 2026-03-15 08:08:08,268 | INFO     | all payload control threads have been joined
[2026-03-15 09:09:10] 2026-03-15 08:08:08,665 | INFO     | [job] retrieve thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:08,665 | INFO     | [job] queue monitor thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:08,674 | INFO     | [data] control thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:08,771 | INFO     | [job] control thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:08,976 | INFO     | job.realtimelogging is not enabled
[2026-03-15 09:09:10] 2026-03-15 08:08:09,028 | INFO     | [payload] failed_post thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:09,135 | INFO     | [job] job monitor thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:09,274 | INFO     | [payload] control thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:09,472 | INFO     | [job] validate thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:09,570 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:09,576 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:09,632 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:09,666 | INFO     | [data] copytool_out thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:09,727 | INFO     | [data] copytool_in thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:09,981 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:10,059 | INFO     | [payload] validate_post thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:11,019 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 09:09:10] 2026-03-15 08:08:15,026 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 09:09:10] 2026-03-15 08:08:55,125 [wrapper] supervise_pilot (15 min periods counter: 5)
[2026-03-15 09:09:10] 2026-03-15 08:09:03,087 | INFO     | [monitor] cgroup control has ended
[2026-03-15 09:09:10] 2026-03-15 08:09:05,099 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140332338399040)>', '<ExcThread(monitor, started 140331974633216)>']
[2026-03-15 09:09:10] 2026-03-15 08:09:05,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 09:09:10] 2026-03-15 08:09:05,962 | INFO     | [monitor] control thread has ended
[2026-03-15 09:09:10] 2026-03-15 08:09:10,125 | INFO     | all workflow threads have been joined
[2026-03-15 09:09:10] 2026-03-15 08:09:10,125 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 09:09:10] 2026-03-15 08:09:10,125 | INFO     | traces error code: 0
[2026-03-15 09:09:10] 2026-03-15 08:09:10,125 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 09:09:10] 2026-03-15 08:09:10,174 [wrapper] ==== pilot stdout END ====
[2026-03-15 09:09:10] 2026-03-15 08:09:10,177 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 09:09:10] 2026-03-15 08:09:10,180 [wrapper] pilotpid: 724845
[2026-03-15 09:09:10] 2026-03-15 08:09:10,182 [wrapper] Pilot exit status: 0
[2026-03-15 09:09:10] 2026-03-15 08:09:10,190 [wrapper] pandaids: 7047420162
[2026-03-15 09:09:10] 2026-03-15 08:09:10,212 [wrapper] cleanup supervisor_pilot  734679 724846
[2026-03-15 09:09:10] 2026-03-15 08:09:10,215 [wrapper] Test setup, not cleaning
[2026-03-15 09:09:10] 2026-03-15 08:09:10,218 [wrapper] apfmon messages muted
[2026-03-15 09:09:10] 2026-03-15 08:09:10,220 [wrapper] ==== wrapper stdout END ====
[2026-03-15 09:09:10] 2026-03-15 08:09:10,223 [wrapper] ==== wrapper stderr END ====
[2026-03-15 09:09:10]  *** Error codes and diagnostics ***
[2026-03-15 09:09:10]     "exeErrorCode": 0,
[2026-03-15 09:09:10]     "exeErrorDiag": "",
[2026-03-15 09:09:10]     "pilotErrorCode": 0,
[2026-03-15 09:09:10]     "pilotErrorDiag": "",
[2026-03-15 09:09:10]  *** Listing of results directory ***
[2026-03-15 09:09:10] total 613344
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc    585013 Mar 14 17:40 pilot3.tar.gz
[2026-03-15 09:09:10] -rwx------ 1 boinc boinc     36322 Mar 14 17:41 runpilot2-wrapper.sh
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc      5111 Mar 14 17:42 queuedata.json
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc       100 Mar 15 08:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 09:09:10] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 08:08 run_atlas
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc       105 Mar 15 08:08 job.xml
[2026-03-15 09:09:10] -rw-r--r-- 2 boinc boinc 441034965 Mar 15 08:08 EVNT.46701403._001969.pool.root.1
[2026-03-15 09:09:10] drwxrwx--x 2 boinc boinc      4096 Mar 15 08:08 shared
[2026-03-15 09:09:10] -rw-r--r-- 2 boinc boinc    597525 Mar 15 08:08 input.tar.gz
[2026-03-15 09:09:10] -rw-r--r-- 2 boinc boinc     15845 Mar 15 08:08 start_atlas.sh
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc         0 Mar 15 08:08 boinc_setup_complete
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc      6439 Mar 15 08:08 init_data.xml
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc         0 Mar 15 08:08 boinc_lockfile
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc      2564 Mar 15 08:08 pandaJob.out
[2026-03-15 09:09:10] -rw------- 1 boinc boinc   1006481 Mar 15 08:08 agis_schedconf.cvmfs.json
[2026-03-15 09:09:10] -rw------- 1 boinc boinc   1511579 Mar 15 08:08 agis_ddmendpoints.agis.ALL.json
[2026-03-15 09:09:10] -rw------- 1 boinc boinc       418 Mar 15 08:08 workernode_map.json
[2026-03-15 09:09:10] drwx------ 5 boinc boinc      4096 Mar 15 08:08 pilot3
[2026-03-15 09:09:10] -rw------- 1 boinc boinc        95 Mar 15 09:07 pilot_heartbeat.json
[2026-03-15 09:09:10] -rw------- 1 boinc boinc 181563300 Mar 15 09:07 HITS.48955010._047200.pool.root.1
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc       530 Mar 15 09:07 boinc_task_state.xml
[2026-03-15 09:09:10] -rw------- 1 boinc boinc      1012 Mar 15 09:07 memory_monitor_summary.json
[2026-03-15 09:09:10] -rw------- 1 boinc boinc    239164 Mar 15 09:08 log.48955010._047200.job.log.tgz.1
[2026-03-15 09:09:10] -rw------- 1 boinc boinc      6286 Mar 15 09:08 heartbeat.json
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc        27 Mar 15 09:09 wrapper_checkpoint.txt
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc      8192 Mar 15 09:09 boinc_mmap_file
[2026-03-15 09:09:10] -rw------- 1 boinc boinc      4624 Mar 15 09:09 pilotlog.txt
[2026-03-15 09:09:10] -rw------- 1 boinc boinc    531937 Mar 15 09:09 log.48955010._047200.job.log.1
[2026-03-15 09:09:10] -rw------- 1 boinc boinc       357 Mar 15 09:09 output.list
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc       620 Mar 15 09:09 runtime_log
[2026-03-15 09:09:10] -rw------- 1 boinc boinc    788480 Mar 15 09:09 result.tar.gz
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc      8901 Mar 15 09:09 runtime_log.err
[2026-03-15 09:09:10] -rw------- 1 boinc boinc       658 Mar 15 09:09 VTbNDmEEhL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm6YtLDmfl7aJo.diag
[2026-03-15 09:09:10] -rw-r--r-- 1 boinc boinc     11013 Mar 15 09:09 stderr.txt
[2026-03-15 09:09:10] HITS file was successfully produced:
[2026-03-15 09:09:10] -rw------- 1 boinc boinc 181563300 Mar 15 09:07 shared/HITS.pool.root.1
[2026-03-15 09:09:10]  *** Contents of shared directory: ***
[2026-03-15 09:09:10] total 609388
[2026-03-15 09:09:10] -rw-r--r-- 2 boinc boinc 441034965 Mar 15 08:08 ATLAS.root_0
[2026-03-15 09:09:10] -rw-r--r-- 2 boinc boinc    597525 Mar 15 08:08 input.tar.gz
[2026-03-15 09:09:10] -rw-r--r-- 2 boinc boinc     15845 Mar 15 08:08 start_atlas.sh
[2026-03-15 09:09:10] -rw------- 1 boinc boinc 181563300 Mar 15 09:07 HITS.pool.root.1
[2026-03-15 09:09:10] -rw------- 1 boinc boinc    788480 Mar 15 09:09 result.tar.gz
09:09:11 (720726): run_atlas exited; CPU time 12912.204018
09:09:11 (720726): called boinc_finish(0)

</stderr_txt>
]]>

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