Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:42:42 (3886018): wrapper (7.7.26015): starting
19:42:42 (3886018): wrapper: running run_atlas (--nthreads 3)
[2026-03-15 19:42:42] Arguments: --nthreads 3
[2026-03-15 19:42:42] Threads: 3
[2026-03-15 19:42:42] Checking for CVMFS
[2026-03-15 19:42:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 19:42:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 19:42:43] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 19:42:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 19:42:43] 2.9.2.0 64072 25977 88892 157324 1 50 29832517 36864001 0 130560 0 10260773 99.982 974978 10772 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 19:42:43] CVMFS is ok
[2026-03-15 19:42:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 19:42:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 19:42:43] Further information can be found at the LHC@home message board.
[2026-03-15 19:42:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 19:42:43] Checking for apptainer binary...
[2026-03-15 19:42:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 19:42:43] Running /usr/bin/apptainer --version
[2026-03-15 19:42:43] apptainer version 1.4.1-1.1
[2026-03-15 19:42:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 19:42:43] thA383
[2026-03-15 19:42:43] apptainer works
[2026-03-15 19:42:43] Set ATHENA_PROC_NUMBER=3
[2026-03-15 19:42:43] Set ATHENA_CORE_NUMBER=3
[2026-03-15 19:42:43] Starting ATLAS job with PandaID=7054628866
[2026-03-15 19:42:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 21:04:13]  *** The last 200 lines of the pilot log: ***
[2026-03-15 21:04:13] 2026-03-15 20:03:41,240 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 21:04:13] 2026-03-15 20:03:41,240 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 21:04:13] 2026-03-15 20:03:41,240 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 21:04:13] 2026-03-15 20:03:41,240 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 21:04:13] 2026-03-15 20:03:41,240 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 21:04:13] 2026-03-15 20:03:41,240 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 21:04:13] 2026-03-15 20:03:41,240 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 21:04:13] 2026-03-15 20:03:41,240 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 21:04:13] 2026-03-15 20:03:41,240 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 21:04:13] 2026-03-15 20:03:41,241 | INFO     | job 7054628866 has completed (purged errors)
[2026-03-15 21:04:13] 2026-03-15 20:03:41,241 | INFO     | overall cleanup function is called
[2026-03-15 21:04:13] 2026-03-15 20:03:42,247 | INFO     | --- collectZombieJob: --- 10, [3894481]
[2026-03-15 21:04:13] 2026-03-15 20:03:42,247 | INFO     | zombie collector waiting for pid 3894481
[2026-03-15 21:04:13] 2026-03-15 20:03:42,247 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 21:04:13] 2026-03-15 20:03:42,248 | INFO     | collected zombie processes
[2026-03-15 21:04:13] 2026-03-15 20:03:42,248 | INFO     | will attempt to kill all subprocesses of pid=3894481
[2026-03-15 21:04:13] 2026-03-15 20:03:42,301 | INFO     | process IDs to be killed: [3894481] (in reverse order)
[2026-03-15 21:04:13] 2026-03-15 20:03:42,329 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 21:04:13] 2026-03-15 20:03:42,330 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 21:04:13] 2026-03-15 20:03:42,331 | INFO     | did not find any defunct processes belonging to 3894481
[2026-03-15 21:04:13] 2026-03-15 20:03:42,332 | INFO     | did not find any defunct processes belonging to 3894481
[2026-03-15 21:04:13] 2026-03-15 20:03:42,333 | INFO     | ready for new job
[2026-03-15 21:04:13] 2026-03-15 20:03:42,333 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 21:04:13] 2026-03-15 20:03:42,333 | INFO     | **************************************
[2026-03-15 21:04:13] 2026-03-15 20:03:42,333 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 21:04:13] 2026-03-15 20:03:42,333 | INFO     | **************************************
[2026-03-15 21:04:13] 2026-03-15 20:03:42,333 | INFO     | 
[2026-03-15 21:04:13] 2026-03-15 20:03:42,334 | INFO     | architecture information:
[2026-03-15 21:04:13] 2026-03-15 20:03:42,334 | INFO     | executing command: cat /etc/os-release
[2026-03-15 21:04:13] 2026-03-15 20:03:42,343 | INFO     | cat /etc/os-release:
[2026-03-15 21:04:13] NAME="CentOS Linux"
[2026-03-15 21:04:13] VERSION="7 (Core)"
[2026-03-15 21:04:13] ID="centos"
[2026-03-15 21:04:13] ID_LIKE="rhel fedora"
[2026-03-15 21:04:13] VERSION_ID="7"
[2026-03-15 21:04:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 21:04:13] ANSI_COLOR="0;31"
[2026-03-15 21:04:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 21:04:13] HOME_URL="https://www.centos.org/"
[2026-03-15 21:04:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 21:04:13] 
[2026-03-15 21:04:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 21:04:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 21:04:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 21:04:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 21:04:13] 
[2026-03-15 21:04:13] 2026-03-15 20:03:42,344 | INFO     | **************************************
[2026-03-15 21:04:13] 2026-03-15 20:03:42,847 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 21:04:13] 2026-03-15 20:03:42,860 | INFO     | sufficient remaining disk space (230115246080 B)
[2026-03-15 21:04:13] 2026-03-15 20:03:42,860 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 21:04:13] 2026-03-15 20:03:42,860 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 21:04:13] 2026-03-15 20:03:42,860 | INFO     | update_server=False
[2026-03-15 21:04:13] 2026-03-15 20:03:42,860 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 21:04:13] 2026-03-15 20:03:42,860 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 21:04:13] 2026-03-15 20:03:42,860 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 21:04:13] 2026-03-15 20:03:42,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 21:04:13] 2026-03-15 20:03:42,928 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 21:04:13] 2026-03-15 20:03:42,929 | INFO     | aborting loop
[2026-03-15 21:04:13] 2026-03-15 20:03:43,233 | INFO     | all job control threads have been joined
[2026-03-15 21:04:13] 2026-03-15 20:03:43,713 | INFO     | all data control threads have been joined
[2026-03-15 21:04:13] 2026-03-15 20:03:43,727 | INFO     | all payload control threads have been joined
[2026-03-15 21:04:13] 2026-03-15 20:03:43,866 | INFO     | [job] retrieve thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:43,866 | INFO     | [job] queue monitor thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:43,934 | INFO     | [job] job monitor thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:44,239 | INFO     | [job] control thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:44,363 | INFO     | [job] validate thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:44,533 | INFO     | [payload] failed_post thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:44,564 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:44,599 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:44,672 | INFO     | [data] copytool_in thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:44,717 | INFO     | [data] control thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:44,732 | INFO     | [payload] control thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:44,788 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:44,866 | INFO     | [data] copytool_out thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:45,215 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:45,317 | INFO     | [payload] validate_post thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:46,865 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 21:04:13] 2026-03-15 20:03:58,824 | INFO     | [monitor] cgroup control has ended
[2026-03-15 21:04:13] 2026-03-15 20:04:00,570 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139693323978560)>', '<ExcThread(monitor, started 139692964030208)>']
[2026-03-15 21:04:13] 2026-03-15 20:04:05,590 | INFO     | all workflow threads have been joined
[2026-03-15 21:04:13] 2026-03-15 20:04:05,590 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 21:04:13] 2026-03-15 20:04:05,591 | INFO     | traces error code: 0
[2026-03-15 21:04:13] 2026-03-15 20:04:05,591 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 21:04:13] 2026-03-15 20:04:13,549 | INFO     | PID=3890057 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 21:04:13] 2026-03-15 20:04:13,549 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 21:04:13] 2026-03-15 20:04:13,549 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 21:04:13] 2026-03-15 20:04:13,549 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 21:04:13] 2026-03-15 20:04:13,549 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 21:04:13] 2026-03-15 20:04:13,549 | CRITICAL | thread 'MainThread' is not alive
[2026-03-15 21:04:13] 2026-03-15 20:04:13,549 | INFO     | [monitor] control thread has ended
[2026-03-15 21:04:13] 2026-03-15 20:04:13,602 [wrapper] ==== pilot stdout END ====
[2026-03-15 21:04:13] 2026-03-15 20:04:13,604 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 21:04:13] 2026-03-15 20:04:13,607 [wrapper] pilotpid: 3890057
[2026-03-15 21:04:13] 2026-03-15 20:04:13,609 [wrapper] Pilot exit status: 0
[2026-03-15 21:04:13] 2026-03-15 20:04:13,616 [wrapper] pandaids: 7054628866
[2026-03-15 21:04:13] 2026-03-15 20:04:13,635 [wrapper] cleanup supervisor_pilot 3900052 3890058
[2026-03-15 21:04:13] 2026-03-15 20:04:13,637 [wrapper] Test setup, not cleaning
[2026-03-15 21:04:13] 2026-03-15 20:04:13,639 [wrapper] apfmon messages muted
[2026-03-15 21:04:13] 2026-03-15 20:04:13,642 [wrapper] ==== wrapper stdout END ====
[2026-03-15 21:04:13] 2026-03-15 20:04:13,644 [wrapper] ==== wrapper stderr END ====
[2026-03-15 21:04:13]  *** Error codes and diagnostics ***
[2026-03-15 21:04:13]     "exeErrorCode": 0,
[2026-03-15 21:04:13]     "exeErrorDiag": "",
[2026-03-15 21:04:13]     "pilotErrorCode": 0,
[2026-03-15 21:04:13]     "pilotErrorDiag": "",
[2026-03-15 21:04:13]  *** Listing of results directory ***
[2026-03-15 21:04:13] total 619712
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc    585013 Mar 14 20:45 pilot3.tar.gz
[2026-03-15 21:04:13] -rwx------ 1 boinc boinc     36322 Mar 14 20:46 runpilot2-wrapper.sh
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc      5111 Mar 14 20:52 queuedata.json
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc       100 Mar 15 19:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 21:04:13] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 19:42 run_atlas
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc       105 Mar 15 19:42 job.xml
[2026-03-15 21:04:13] -rw-r--r-- 2 boinc boinc 438708353 Mar 15 19:42 EVNT.46701403._002438.pool.root.1
[2026-03-15 21:04:13] -rw-r--r-- 2 boinc boinc    597542 Mar 15 19:42 input.tar.gz
[2026-03-15 21:04:13] -rw-r--r-- 2 boinc boinc     15845 Mar 15 19:42 start_atlas.sh
[2026-03-15 21:04:13] drwxrwx--x 2 boinc boinc      4096 Mar 15 19:42 shared
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc         0 Mar 15 19:42 boinc_setup_complete
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc      6438 Mar 15 19:42 init_data.xml
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc         0 Mar 15 19:42 boinc_lockfile
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc      2570 Mar 15 19:42 pandaJob.out
[2026-03-15 21:04:13] -rw------- 1 boinc boinc   1006473 Mar 15 19:42 agis_schedconf.cvmfs.json
[2026-03-15 21:04:13] -rw------- 1 boinc boinc   1511579 Mar 15 19:42 agis_ddmendpoints.agis.ALL.json
[2026-03-15 21:04:13] -rw------- 1 boinc boinc       427 Mar 15 19:42 workernode_map.json
[2026-03-15 21:04:13] drwx------ 5 boinc boinc      4096 Mar 15 19:42 pilot3
[2026-03-15 21:04:13] -rw------- 1 boinc boinc        95 Mar 15 21:03 pilot_heartbeat.json
[2026-03-15 21:04:13] -rw------- 1 boinc boinc 189959802 Mar 15 21:03 HITS.48955015._025878.pool.root.1
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc       530 Mar 15 21:03 boinc_task_state.xml
[2026-03-15 21:04:13] -rw------- 1 boinc boinc      1020 Mar 15 21:03 memory_monitor_summary.json
[2026-03-15 21:04:13] -rw------- 1 boinc boinc    288655 Mar 15 21:03 log.48955015._025878.job.log.tgz.1
[2026-03-15 21:04:13] -rw------- 1 boinc boinc      6316 Mar 15 21:03 heartbeat.json
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc      8192 Mar 15 21:03 boinc_mmap_file
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc        27 Mar 15 21:03 wrapper_checkpoint.txt
[2026-03-15 21:04:13] -rw------- 1 boinc boinc       817 Mar 15 21:04 pilotlog.txt
[2026-03-15 21:04:13] -rw------- 1 boinc boinc    711821 Mar 15 21:04 log.48955015._025878.job.log.1
[2026-03-15 21:04:13] -rw------- 1 boinc boinc       357 Mar 15 21:04 output.list
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc       620 Mar 15 21:04 runtime_log
[2026-03-15 21:04:13] -rw------- 1 boinc boinc   1013760 Mar 15 21:04 result.tar.gz
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc      8896 Mar 15 21:04 runtime_log.err
[2026-03-15 21:04:13] -rw------- 1 boinc boinc       657 Mar 15 21:04 ESmNDmX7jL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmwirLDmu3DPJn.diag
[2026-03-15 21:04:13] -rw-r--r-- 1 boinc boinc     11814 Mar 15 21:04 stderr.txt
[2026-03-15 21:04:13] HITS file was successfully produced:
[2026-03-15 21:04:13] -rw------- 1 boinc boinc 189959802 Mar 15 21:03 shared/HITS.pool.root.1
[2026-03-15 21:04:13]  *** Contents of shared directory: ***
[2026-03-15 21:04:13] total 615536
[2026-03-15 21:04:13] -rw-r--r-- 2 boinc boinc 438708353 Mar 15 19:42 ATLAS.root_0
[2026-03-15 21:04:13] -rw-r--r-- 2 boinc boinc    597542 Mar 15 19:42 input.tar.gz
[2026-03-15 21:04:13] -rw-r--r-- 2 boinc boinc     15845 Mar 15 19:42 start_atlas.sh
[2026-03-15 21:04:13] -rw------- 1 boinc boinc 189959802 Mar 15 21:03 HITS.pool.root.1
[2026-03-15 21:04:13] -rw------- 1 boinc boinc   1013760 Mar 15 21:04 result.tar.gz
21:04:15 (3886018): run_atlas exited; CPU time 13615.288362
21:04:15 (3886018): called boinc_finish(0)

</stderr_txt>
]]>

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