Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:27:40 (777590): wrapper (7.7.26015): starting
12:27:40 (777590): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 12:27:40] Arguments: --nthreads 4
[2026-03-15 12:27:40] Threads: 4
[2026-03-15 12:27:40] Checking for CVMFS
[2026-03-15 12:27:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 12:27:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 12:27:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 12:27:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 12:27:40] 2.9.2.0 49711 25781 105728 157312 2 49 27323157 36864001 0 130560 0 13653439 99.986 966311 13242 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 12:27:40] CVMFS is ok
[2026-03-15 12:27:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 12:27:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 12:27:40] Further information can be found at the LHC@home message board.
[2026-03-15 12:27:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 12:27:40] Checking for apptainer binary...
[2026-03-15 12:27:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 12:27:40] Running /usr/bin/apptainer --version
[2026-03-15 12:27:40] apptainer version 1.4.1-1.1
[2026-03-15 12:27:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 12:27:40] thA317a
[2026-03-15 12:27:40] apptainer works
[2026-03-15 12:27:40] Set ATHENA_PROC_NUMBER=4
[2026-03-15 12:27:40] Set ATHENA_CORE_NUMBER=4
[2026-03-15 12:27:40] Starting ATLAS job with PandaID=7053839881
[2026-03-15 12:27:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 13:26:18]  *** The last 200 lines of the pilot log: ***
[2026-03-15 13:26:18] 2026-03-15 12:25:45,783 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 13:26:18] 2026-03-15 12:25:45,783 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 13:26:18] 2026-03-15 12:25:45,783 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 13:26:18] 2026-03-15 12:25:45,783 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 13:26:18] 2026-03-15 12:25:45,783 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 13:26:18] 2026-03-15 12:25:45,783 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 13:26:18] 2026-03-15 12:25:45,783 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 13:26:18] 2026-03-15 12:25:45,783 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 13:26:18] 2026-03-15 12:25:45,783 | INFO     | job 7053839881 has completed (purged errors)
[2026-03-15 13:26:18] 2026-03-15 12:25:45,783 | INFO     | overall cleanup function is called
[2026-03-15 13:26:18] 2026-03-15 12:25:46,359 | INFO     | PID=781699 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 13:26:18] 2026-03-15 12:25:46,790 | INFO     | --- collectZombieJob: --- 10, [786205]
[2026-03-15 13:26:18] 2026-03-15 12:25:46,790 | INFO     | zombie collector waiting for pid 786205
[2026-03-15 13:26:18] 2026-03-15 12:25:46,790 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 13:26:18] 2026-03-15 12:25:46,790 | INFO     | collected zombie processes
[2026-03-15 13:26:18] 2026-03-15 12:25:46,790 | INFO     | will attempt to kill all subprocesses of pid=786205
[2026-03-15 13:26:18] 2026-03-15 12:25:46,848 | INFO     | process IDs to be killed: [786205] (in reverse order)
[2026-03-15 13:26:18] 2026-03-15 12:25:46,880 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 13:26:18] 2026-03-15 12:25:46,880 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 13:26:18] 2026-03-15 12:25:46,882 | INFO     | did not find any defunct processes belonging to 786205
[2026-03-15 13:26:18] 2026-03-15 12:25:46,884 | INFO     | did not find any defunct processes belonging to 786205
[2026-03-15 13:26:18] 2026-03-15 12:25:46,884 | INFO     | ready for new job
[2026-03-15 13:26:18] 2026-03-15 12:25:46,884 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 13:26:18] 2026-03-15 12:25:46,884 | INFO     | **************************************
[2026-03-15 13:26:18] 2026-03-15 12:25:46,884 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 13:26:18] 2026-03-15 12:25:46,884 | INFO     | **************************************
[2026-03-15 13:26:18] 2026-03-15 12:25:46,885 | INFO     | 
[2026-03-15 13:26:18] 2026-03-15 12:25:46,885 | INFO     | architecture information:
[2026-03-15 13:26:18] 2026-03-15 12:25:46,885 | INFO     | executing command: cat /etc/os-release
[2026-03-15 13:26:18] 2026-03-15 12:25:46,895 | INFO     | cat /etc/os-release:
[2026-03-15 13:26:18] NAME="CentOS Linux"
[2026-03-15 13:26:18] VERSION="7 (Core)"
[2026-03-15 13:26:18] ID="centos"
[2026-03-15 13:26:18] ID_LIKE="rhel fedora"
[2026-03-15 13:26:18] VERSION_ID="7"
[2026-03-15 13:26:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 13:26:18] ANSI_COLOR="0;31"
[2026-03-15 13:26:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 13:26:18] HOME_URL="https://www.centos.org/"
[2026-03-15 13:26:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 13:26:18] 
[2026-03-15 13:26:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 13:26:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 13:26:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 13:26:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 13:26:18] 
[2026-03-15 13:26:18] 2026-03-15 12:25:46,895 | INFO     | **************************************
[2026-03-15 13:26:18] 2026-03-15 12:25:47,398 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 13:26:18] 2026-03-15 12:25:47,411 | INFO     | sufficient remaining disk space (233335422976 B)
[2026-03-15 13:26:18] 2026-03-15 12:25:47,411 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 13:26:18] 2026-03-15 12:25:47,411 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 13:26:18] 2026-03-15 12:25:47,411 | INFO     | update_server=False
[2026-03-15 13:26:18] 2026-03-15 12:25:47,411 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 13:26:18] 2026-03-15 12:25:47,411 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 13:26:18] 2026-03-15 12:25:47,411 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 13:26:18] 2026-03-15 12:25:47,445 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-15 13:26:18] 2026-03-15 12:25:47,445 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-15 13:26:18] 2026-03-15 12:25:47,445 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 13:26:18] 2026-03-15 12:25:47,445 | INFO     | will abort loop
[2026-03-15 13:26:18] 2026-03-15 12:25:47,806 | INFO     | all data control threads have been joined
[2026-03-15 13:26:18] 2026-03-15 12:25:48,006 | INFO     | all payload control threads have been joined
[2026-03-15 13:26:18] 2026-03-15 12:25:48,028 | INFO     | all job control threads have been joined
[2026-03-15 13:26:18] 2026-03-15 12:25:48,417 | INFO     | [job] queue monitor thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:48,417 | INFO     | [job] retrieve thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:48,450 | INFO     | [job] job monitor thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:48,811 | INFO     | [data] control thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:48,883 | INFO     | [payload] failed_post thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:48,914 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:49,012 | INFO     | [payload] control thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:49,034 | INFO     | [job] control thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:49,250 | INFO     | [job] validate thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:49,374 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:49,396 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:49,417 | INFO     | [data] copytool_out thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:49,445 | INFO     | [payload] validate_post thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:49,526 | INFO     | [data] copytool_in thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:49,709 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:50,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 13:26:18] 2026-03-15 12:25:54,906 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 13:26:18] 2026-03-15 12:25:55,720 | INFO     | [monitor] cgroup control has ended
[2026-03-15 13:26:18] 2026-03-15 12:25:55,797 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140135393437504)>', '<ExcThread(monitor, started 140134758467328)>']
[2026-03-15 13:26:18] 2026-03-15 12:26:00,823 | INFO     | all workflow threads have been joined
[2026-03-15 13:26:18] 2026-03-15 12:26:00,823 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 13:26:18] 2026-03-15 12:26:00,823 | INFO     | traces error code: 0
[2026-03-15 13:26:18] 2026-03-15 12:26:00,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 13:26:18] 2026-03-15 12:26:18,497 | INFO     | PID=781699 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 13:26:18] 2026-03-15 12:26:18,498 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 13:26:18] 2026-03-15 12:26:18,498 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 13:26:18] 2026-03-15 12:26:18,498 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 13:26:18] 2026-03-15 12:26:18,498 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 13:26:18] 2026-03-15 12:26:18,498 | INFO     | [monitor] control thread has ended
[2026-03-15 13:26:18] 2026-03-15 12:26:18,543 [wrapper] ==== pilot stdout END ====
[2026-03-15 13:26:18] 2026-03-15 12:26:18,546 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 13:26:18] 2026-03-15 12:26:18,549 [wrapper] pilotpid: 781699
[2026-03-15 13:26:18] 2026-03-15 12:26:18,552 [wrapper] Pilot exit status: 0
[2026-03-15 13:26:18] 2026-03-15 12:26:18,560 [wrapper] pandaids: 7053839881
[2026-03-15 13:26:18] 2026-03-15 12:26:18,581 [wrapper] cleanup supervisor_pilot  791263 781700
[2026-03-15 13:26:18] 2026-03-15 12:26:18,584 [wrapper] Test setup, not cleaning
[2026-03-15 13:26:18] 2026-03-15 12:26:18,586 [wrapper] apfmon messages muted
[2026-03-15 13:26:18] 2026-03-15 12:26:18,589 [wrapper] ==== wrapper stdout END ====
[2026-03-15 13:26:18] 2026-03-15 12:26:18,591 [wrapper] ==== wrapper stderr END ====
[2026-03-15 13:26:18]  *** Error codes and diagnostics ***
[2026-03-15 13:26:18]     "exeErrorCode": 0,
[2026-03-15 13:26:18]     "exeErrorDiag": "",
[2026-03-15 13:26:18]     "pilotErrorCode": 0,
[2026-03-15 13:26:18]     "pilotErrorDiag": "",
[2026-03-15 13:26:18]  *** Listing of results directory ***
[2026-03-15 13:26:18] total 617784
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc    585013 Mar 14 20:45 pilot3.tar.gz
[2026-03-15 13:26:18] -rwx------ 1 boinc boinc     36322 Mar 14 20:46 runpilot2-wrapper.sh
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc      5111 Mar 14 20:50 queuedata.json
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc       100 Mar 15 12:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 13:26:18] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 12:27 run_atlas
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc       105 Mar 15 12:27 job.xml
[2026-03-15 13:26:18] -rw-r--r-- 2 boinc boinc 445048851 Mar 15 12:27 EVNT.46701403._001562.pool.root.1
[2026-03-15 13:26:18] -rw-r--r-- 2 boinc boinc    597535 Mar 15 12:27 input.tar.gz
[2026-03-15 13:26:18] -rw-r--r-- 2 boinc boinc     15845 Mar 15 12:27 start_atlas.sh
[2026-03-15 13:26:18] drwxrwx--x 2 boinc boinc      4096 Mar 15 12:27 shared
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc         0 Mar 15 12:27 boinc_setup_complete
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc      6439 Mar 15 12:27 init_data.xml
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc         0 Mar 15 12:27 boinc_lockfile
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc      2561 Mar 15 12:27 pandaJob.out
[2026-03-15 13:26:18] -rw------- 1 boinc boinc   1006481 Mar 15 12:27 agis_schedconf.cvmfs.json
[2026-03-15 13:26:18] -rw------- 1 boinc boinc   1511579 Mar 15 12:27 agis_ddmendpoints.agis.ALL.json
[2026-03-15 13:26:18] -rw------- 1 boinc boinc       424 Mar 15 12:27 workernode_map.json
[2026-03-15 13:26:18] drwx------ 5 boinc boinc      4096 Mar 15 12:27 pilot3
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc       530 Mar 15 13:25 boinc_task_state.xml
[2026-03-15 13:26:18] -rw------- 1 boinc boinc 182083253 Mar 15 13:25 HITS.48955010._051307.pool.root.1
[2026-03-15 13:26:18] -rw------- 1 boinc boinc      1014 Mar 15 13:25 memory_monitor_summary.json
[2026-03-15 13:26:18] -rw------- 1 boinc boinc    256689 Mar 15 13:25 log.48955010._051307.job.log.tgz.1
[2026-03-15 13:26:18] -rw------- 1 boinc boinc      6303 Mar 15 13:25 heartbeat.json
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc      8192 Mar 15 13:25 boinc_mmap_file
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc        27 Mar 15 13:25 wrapper_checkpoint.txt
[2026-03-15 13:26:18] -rw------- 1 boinc boinc       746 Mar 15 13:26 pilotlog.txt
[2026-03-15 13:26:18] -rw------- 1 boinc boinc        95 Mar 15 13:26 pilot_heartbeat.json
[2026-03-15 13:26:18] -rw------- 1 boinc boinc    523541 Mar 15 13:26 log.48955010._051307.job.log.1
[2026-03-15 13:26:18] -rw------- 1 boinc boinc       357 Mar 15 13:26 output.list
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc       620 Mar 15 13:26 runtime_log
[2026-03-15 13:26:18] -rw------- 1 boinc boinc    798720 Mar 15 13:26 result.tar.gz
[2026-03-15 13:26:18] -rw------- 1 boinc boinc       658 Mar 15 13:26 wtSMDm46jL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmtdrLDm7gfj9n.diag
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc      8901 Mar 15 13:26 runtime_log.err
[2026-03-15 13:26:18] -rw-r--r-- 1 boinc boinc     12062 Mar 15 13:26 stderr.txt
[2026-03-15 13:26:18] HITS file was successfully produced:
[2026-03-15 13:26:18] -rw------- 1 boinc boinc 182083253 Mar 15 13:25 shared/HITS.pool.root.1
[2026-03-15 13:26:18]  *** Contents of shared directory: ***
[2026-03-15 13:26:18] total 613824
[2026-03-15 13:26:18] -rw-r--r-- 2 boinc boinc 445048851 Mar 15 12:27 ATLAS.root_0
[2026-03-15 13:26:18] -rw-r--r-- 2 boinc boinc    597535 Mar 15 12:27 input.tar.gz
[2026-03-15 13:26:18] -rw-r--r-- 2 boinc boinc     15845 Mar 15 12:27 start_atlas.sh
[2026-03-15 13:26:18] -rw------- 1 boinc boinc 182083253 Mar 15 13:25 HITS.pool.root.1
[2026-03-15 13:26:18] -rw------- 1 boinc boinc    798720 Mar 15 13:26 result.tar.gz
13:26:20 (777590): run_atlas exited; CPU time 12653.891886
13:26:20 (777590): called boinc_finish(0)

</stderr_txt>
]]>

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