Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:33:58 (2625479): wrapper (7.7.26015): starting
18:33:58 (2625479): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 18:33:58] Arguments: --nthreads 4
[2026-03-15 18:33:58] Threads: 4
[2026-03-15 18:33:58] Checking for CVMFS
[2026-03-15 18:33:58] No cvmfs_config command found, will try listing directly
[2026-03-15 18:33:58] CVMFS is ok
[2026-03-15 18:33:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 18:33:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 18:33:58] Further information can be found at the LHC@home message board.
[2026-03-15 18:33:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 18:33:58] Checking for apptainer binary...
[2026-03-15 18:33:58] which: no apptainer in ((null))
[2026-03-15 18:33:58] apptainer is not installed, using version from CVMFS
[2026-03-15 18:33:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 18:33:58] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot224/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-15 18:33:58] apptainer works
[2026-03-15 18:33:58] Set ATHENA_PROC_NUMBER=4
[2026-03-15 18:33:58] Set ATHENA_CORE_NUMBER=4
[2026-03-15 18:33:58] Starting ATLAS job with PandaID=7053136577
[2026-03-15 18:33:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot224/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 19:48:24]  *** The last 200 lines of the pilot log: ***
[2026-03-15 19:48:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-15 19:48:24]  replicas=None
[2026-03-15 19:48:24]  scope=mc23_13p6TeV
[2026-03-15 19:48:24]  status=None
[2026-03-15 19:48:24]  status_code=0
[2026-03-15 19:48:24]  storage_token=
[2026-03-15 19:48:24]  surl=/var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7053136577/log.48955006._052234.job.log.tgz.1
[2026-03-15 19:48:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/7e/log.48955006._052234.job.log.tgz.1
[2026-03-15 19:48:24]  workdir=None
[2026-03-15 19:48:24] ]
[2026-03-15 19:48:24] 2026-03-15 18:47:31,751 | INFO     | transferring file log.48955006._052234.job.log.tgz.1 from /var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7053136577/log.48955006._052234.job.log.tgz.1 to /var/lib/
[2026-03-15 19:48:24] 2026-03-15 18:47:31,751 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7053136577/log.48955006._052234.job.log.tgz.1 /var/lib/boinc/var/slot224/slots/0/
[2026-03-15 19:48:24] 2026-03-15 18:47:31,768 | INFO     | adding to output.list: log.48955006._052234.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/7e/log.48955006._052234.job.log.tg
[2026-03-15 19:48:24] 2026-03-15 18:47:31,768 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-15 19:48:24] 2026-03-15 18:47:31,768 | INFO     | summary of transferred files:
[2026-03-15 19:48:24] 2026-03-15 18:47:31,768 | INFO     |  -- lfn=log.48955006._052234.job.log.tgz.1, status_code=0, status=transferred
[2026-03-15 19:48:24] 2026-03-15 18:47:31,768 | INFO     | stage-out finished correctly
[2026-03-15 19:48:24] 2026-03-15 18:47:33,106 | INFO     | time since job start (4402s) is within the limit (345600.0s)
[2026-03-15 19:48:24] 2026-03-15 18:47:33,354 | WARNING  | process 2645844 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 19:48:24] 2026-03-15 18:47:33,354 | INFO     | using path: /var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7053136577/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 19:48:24] 2026-03-15 18:47:33,737 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-15 19:48:24] 2026-03-15 18:47:33,842 | INFO     | number of running child processes to parent process 2645844: 1
[2026-03-15 19:48:24] 2026-03-15 18:47:33,842 | INFO     | maximum number of monitored processes: 6
[2026-03-15 19:48:24] 2026-03-15 18:47:35,112 | INFO     | time since job start (4404s) is within the limit (345600.0s)
[2026-03-15 19:48:24] 2026-03-15 18:47:36,345 | INFO     | monitor loop #320: job 0:7053136577 is in state 'finished'
[2026-03-15 19:48:24] 2026-03-15 18:47:36,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-15 19:48:24] 2026-03-15 18:47:36,416 | INFO     | job 7053136577 has state=finished
[2026-03-15 19:48:24] 2026-03-15 18:47:36,416 | INFO     | preparing for final server update for job 7053136577 in state='finished'
[2026-03-15 19:48:24] 2026-03-15 18:47:36,416 | INFO     | reading metadata from: /var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7053136577/jobReport.json
[2026-03-15 19:48:24] 2026-03-15 18:47:36,418 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot224/slots/0/workernode_map.json
[2026-03-15 19:48:24] 2026-03-15 18:47:36,419 | INFO     | this job has now completed (state=finished)
[2026-03-15 19:48:24] 2026-03-15 18:47:36,419 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 19:48:24] 2026-03-15 18:47:36,419 | INFO     | log transfer has been attempted: DONE
[2026-03-15 19:48:24] 2026-03-15 18:47:36,419 | INFO     | job 7053136577 has finished - writing final server update
[2026-03-15 19:48:24] 2026-03-15 18:47:36,419 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2521930/.job.ad'
[2026-03-15 19:48:24] 2026-03-15 18:47:36,420 | INFO     | total number of processed events: 400 (read)
[2026-03-15 19:48:24] 2026-03-15 18:47:36,445 | INFO     | using path: /var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7053136577/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 19:48:24] 2026-03-15 18:47:36,446 | INFO     | extracted standard info from prmon json
[2026-03-15 19:48:24] 2026-03-15 18:47:36,446 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 19:48:24] 2026-03-15 18:47:36,446 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 19:48:24] 2026-03-15 18:47:36,446 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 19:48:24] 2026-03-15 18:47:36,446 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 19:48:24] 2026-03-15 18:47:36,448 | INFO     | fitting pss+swap vs Time
[2026-03-15 19:48:24] 2026-03-15 18:47:36,448 | INFO     | sum of square deviations: 85136480.0
[2026-03-15 19:48:24] 2026-03-15 18:47:36,448 | INFO     | sum of deviations: -275645092.0000002
[2026-03-15 19:48:24] 2026-03-15 18:47:36,448 | INFO     | mean x: 1773598329.0
[2026-03-15 19:48:24] 2026-03-15 18:47:36,448 | INFO     | mean y: 2332360.3384615383
[2026-03-15 19:48:24] 2026-03-15 18:47:36,448 | INFO     | intersect: 5744684810.994768
[2026-03-15 19:48:24] 2026-03-15 18:47:36,448 | INFO     | chi2: 0.0005401074938082354
[2026-03-15 19:48:24] 2026-03-15 18:47:36,448 | INFO     | current memory leak: -3.24 B/s (using 65 data points, chi2=0.00)
[2026-03-15 19:48:24] 2026-03-15 18:47:36,449 | INFO     | could have reported an average CPU frequency of 3611 MHz (6 samples)
[2026-03-15 19:48:24] 2026-03-15 18:47:36,449 | INFO     | ..............................
[2026-03-15 19:48:24] 2026-03-15 18:47:36,449 | INFO     | . Timing measurements:
[2026-03-15 19:48:24] 2026-03-15 18:47:36,449 | INFO     | . get job = 0 s
[2026-03-15 19:48:24] 2026-03-15 18:47:36,449 | INFO     | . initial setup = 5 s
[2026-03-15 19:48:24] 2026-03-15 18:47:36,449 | INFO     | . payload setup = 5 s
[2026-03-15 19:48:24] 2026-03-15 18:47:36,449 | INFO     | . stage-in = 0 s
[2026-03-15 19:48:24] 2026-03-15 18:47:36,449 | INFO     | . payload execution = 4380 s
[2026-03-15 19:48:24] 2026-03-15 18:47:36,449 | INFO     | . stage-out = 0 s
[2026-03-15 19:48:24] 2026-03-15 18:47:36,449 | INFO     | . log creation = 0 s
[2026-03-15 19:48:24] 2026-03-15 18:47:36,449 | INFO     | ..............................
[2026-03-15 19:48:24] 2026-03-15 18:47:36,499 | INFO     | 
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | job summary report
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | --------------------------------------------------
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | PanDA job id: 7053136577
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | task id: 48955006
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | errors: (none)
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | pilot state: finished 
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | transexitcode: 0
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | exeerrorcode: 0
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | exeerrordiag: 
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | exitcode: 0
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | exitmsg: OK
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | cpuconsumptiontime: 16772 s
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | nevents: 400
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | neventsw: 0
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | pid: 2645844
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | pgrp: 2645844
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | corecount: 4
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | event service: False
[2026-03-15 19:48:24] 2026-03-15 18:47:36,500 | INFO     | sizes: {0: 2280193, 11: 2280193, 4389: 2306244, 4390: 2315266, 4391: 2315322, 4394: 2315516}
[2026-03-15 19:48:24] 2026-03-15 18:47:36,501 | INFO     | --------------------------------------------------
[2026-03-15 19:48:24] 2026-03-15 18:47:36,501 | INFO     | 
[2026-03-15 19:48:24] 2026-03-15 18:47:36,501 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot224/slots/0
[2026-03-15 19:48:24] 2026-03-15 18:47:36,518 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,518 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,518 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,518 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,518 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,518 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,518 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,518 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | job 7053136577 has completed (purged errors)
[2026-03-15 19:48:24] 2026-03-15 18:47:36,519 | INFO     | overall cleanup function is called
[2026-03-15 19:48:24] 2026-03-15 18:47:36,767 | INFO     | PID=2634255 has CPU usage=13.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-15 19:48:24] 2026-03-15 18:47:36,767 | INFO     | .. there are 40 such processes running
[2026-03-15 19:48:24] 2026-03-15 18:47:37,527 | INFO     | --- collectZombieJob: --- 10, [2645844]
[2026-03-15 19:48:24] 2026-03-15 18:47:37,527 | INFO     | zombie collector waiting for pid 2645844
[2026-03-15 19:48:24] 2026-03-15 18:47:37,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 19:48:24] 2026-03-15 18:47:37,527 | INFO     | collected zombie processes
[2026-03-15 19:48:24] 2026-03-15 18:47:37,527 | INFO     | will attempt to kill all subprocesses of pid=2645844
[2026-03-15 19:48:24] 2026-03-15 18:47:37,978 | INFO     | process IDs to be killed: [2645844] (in reverse order)
[2026-03-15 19:48:24] 2026-03-15 18:47:38,201 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 19:48:24] 2026-03-15 18:47:38,201 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 19:48:24] 2026-03-15 18:47:38,233 | INFO     | did not find any defunct processes belonging to 2645844
[2026-03-15 19:48:24] 2026-03-15 18:47:38,262 | INFO     | did not find any defunct processes belonging to 2645844
[2026-03-15 19:48:24] 2026-03-15 18:47:38,262 | INFO     | ready for new job
[2026-03-15 19:48:24] 2026-03-15 18:47:38,262 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 19:48:24] 2026-03-15 18:47:38,264 | INFO     | **************************************
[2026-03-15 19:48:24] 2026-03-15 18:47:38,264 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 19:48:24] 2026-03-15 18:47:38,264 | INFO     | **************************************
[2026-03-15 19:48:24] 2026-03-15 18:47:38,264 | INFO     | 
[2026-03-15 19:48:24] 2026-03-15 18:47:38,269 | INFO     | architecture information:
[2026-03-15 19:48:24] 2026-03-15 18:47:38,270 | INFO     | executing command: cat /etc/os-release
[2026-03-15 19:48:24] 2026-03-15 18:47:38,284 | INFO     | cat /etc/os-release:
[2026-03-15 19:48:24] NAME="CentOS Linux"
[2026-03-15 19:48:24] VERSION="7 (Core)"
[2026-03-15 19:48:24] ID="centos"
[2026-03-15 19:48:24] ID_LIKE="rhel fedora"
[2026-03-15 19:48:24] VERSION_ID="7"
[2026-03-15 19:48:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 19:48:24] ANSI_COLOR="0;31"
[2026-03-15 19:48:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 19:48:24] HOME_URL="https://www.centos.org/"
[2026-03-15 19:48:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 19:48:24] 
[2026-03-15 19:48:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 19:48:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 19:48:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 19:48:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 19:48:24] 
[2026-03-15 19:48:24] 2026-03-15 18:47:38,284 | INFO     | **************************************
[2026-03-15 19:48:24] 2026-03-15 18:47:38,787 | INFO     | executing command: df -mP /var/lib/boinc/var/slot224/slots/0
[2026-03-15 19:48:24] 2026-03-15 18:47:38,803 | INFO     | sufficient remaining disk space (185452199936 B)
[2026-03-15 19:48:24] 2026-03-15 18:47:38,803 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 19:48:24] 2026-03-15 18:47:38,803 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 19:48:24] 2026-03-15 18:47:38,803 | INFO     | update_server=False
[2026-03-15 19:48:24] 2026-03-15 18:47:38,803 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 19:48:24] 2026-03-15 18:47:38,848 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-15 19:48:24] 2026-03-15 18:47:38,849 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-15 19:48:24] 2026-03-15 18:47:38,849 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 19:48:24] 2026-03-15 18:47:38,849 | INFO     | will abort loop
[2026-03-15 19:48:24] 2026-03-15 18:47:39,397 | INFO     | all payload control threads have been joined
[2026-03-15 19:48:24] 2026-03-15 18:47:39,789 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 19:48:24] 2026-03-15 18:47:39,808 | INFO     | [job] retrieve thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:39,824 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 19:48:24] 2026-03-15 18:47:39,854 | INFO     | [job] job monitor thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:39,867 | INFO     | all data control threads have been joined
[2026-03-15 19:48:24] 2026-03-15 18:47:39,929 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:40,079 | INFO     | all job control threads have been joined
[2026-03-15 19:48:24] 2026-03-15 18:47:40,183 | INFO     | [job] validate thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:40,254 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:40,277 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:40,299 | INFO     | [payload] validate_post thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:40,403 | INFO     | [payload] control thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:40,545 | INFO     | [data] copytool_in thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:40,869 | INFO     | [data] control thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:41,027 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:41,083 | INFO     | [job] control thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:41,357 | INFO     | [payload] failed_post thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:41,509 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 19:48:24] 2026-03-15 18:47:41,825 | INFO     | [data] copytool_out thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:42,513 | INFO     | [job] queue monitor thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:47:43,795 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 19:48:24] 2026-03-15 18:48:09,401 | INFO     | PID=2634255 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 19:48:24] 2026-03-15 18:48:09,401 | INFO     | .. there are 40 such processes running
[2026-03-15 19:48:24] 2026-03-15 18:48:09,402 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 19:48:24] 2026-03-15 18:48:09,402 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 19:48:24] 2026-03-15 18:48:09,402 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 19:48:24] 2026-03-15 18:48:17,780 | INFO     | [monitor] cgroup control has ended
[2026-03-15 19:48:24] 2026-03-15 18:48:19,570 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22452791486272)>', '<ExcThread(monitor, started 22452551034624)>']
[2026-03-15 19:48:24] 2026-03-15 18:48:20,453 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 19:48:24] 2026-03-15 18:48:20,453 | INFO     | [monitor] control thread has ended
[2026-03-15 19:48:24] 2026-03-15 18:48:24,594 | INFO     | all workflow threads have been joined
[2026-03-15 19:48:24] 2026-03-15 18:48:24,595 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 19:48:24] 2026-03-15 18:48:24,595 | INFO     | traces error code: 0
[2026-03-15 19:48:24] 2026-03-15 18:48:24,595 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 19:48:24] 2026-03-15 18:48:24,707 [wrapper] ==== pilot stdout END ====
[2026-03-15 19:48:24] 2026-03-15 18:48:24,708 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 19:48:24] 2026-03-15 18:48:24,710 [wrapper] pilotpid: 2634255
[2026-03-15 19:48:24] 2026-03-15 18:48:24,711 [wrapper] Pilot exit status: 0
[2026-03-15 19:48:24] 2026-03-15 18:48:24,718 [wrapper] pandaids: 7053136577
[2026-03-15 19:48:24] 2026-03-15 18:48:24,844 [wrapper] cleanup supervisor_pilot 3128065 2634256
[2026-03-15 19:48:24] 2026-03-15 18:48:24,847 [wrapper] Test setup, not cleaning
[2026-03-15 19:48:24] 2026-03-15 18:48:24,849 [wrapper] apfmon messages muted
[2026-03-15 19:48:24] 2026-03-15 18:48:24,852 [wrapper] ==== wrapper stdout END ====
[2026-03-15 19:48:24] 2026-03-15 18:48:24,854 [wrapper] ==== wrapper stderr END ====
[2026-03-15 19:48:24]  *** Error codes and diagnostics ***
[2026-03-15 19:48:24]     "exeErrorCode": 0,
[2026-03-15 19:48:24]     "exeErrorDiag": "",
[2026-03-15 19:48:24]     "pilotErrorCode": 0,
[2026-03-15 19:48:24]     "pilotErrorDiag": "",
[2026-03-15 19:48:24]  *** Listing of results directory ***
[2026-03-15 19:48:24] total 611860
[2026-03-15 19:48:24] -rw-r--r--. 1 boinc boinc      5111 Mar 14 20:43 queuedata.json
[2026-03-15 19:48:24] -rwx------. 1 boinc boinc     36322 Mar 14 20:45 runpilot2-wrapper.sh
[2026-03-15 19:48:24] -rw-r--r--. 1 boinc boinc    585013 Mar 14 20:45 pilot3.tar.gz
[2026-03-15 19:48:24] -rw-r--r--. 1 boinc boinc       100 Mar 15 18:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 19:48:24] -rwxr-xr-x. 1 boinc boinc      7986 Mar 15 18:33 run_atlas
[2026-03-15 19:48:24] -rw-r--r--. 1 boinc boinc       105 Mar 15 18:33 job.xml
[2026-03-15 19:48:24] -rw-r--r--. 2 boinc boinc     15845 Mar 15 18:33 start_atlas.sh
[2026-03-15 19:48:24] drwxrwx--x. 2 boinc boinc      4096 Mar 15 18:33 shared
[2026-03-15 19:48:24] -rw-r--r--. 2 boinc boinc    597533 Mar 15 18:33 input.tar.gz
[2026-03-15 19:48:24] -rw-r--r--. 1 boinc boinc      6710 Mar 15 18:33 init_data.xml
[2026-03-15 19:48:24] -rw-r--r--. 2 boinc boinc 440190681 Mar 15 18:33 EVNT.46701403._000923.pool.root.1
[2026-03-15 19:48:24] -rw-r--r--. 1 boinc boinc         0 Mar 15 18:33 boinc_lockfile
[2026-03-15 19:48:24] -rw-r--r--. 1 boinc boinc      2564 Mar 15 18:33 pandaJob.out
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc   1006473 Mar 15 18:34 agis_schedconf.cvmfs.json
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc   1511579 Mar 15 18:34 agis_ddmendpoints.agis.ALL.json
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc       444 Mar 15 18:34 workernode_map.json
[2026-03-15 19:48:24] drwx------. 5 boinc boinc      4096 Mar 15 18:34 pilot3
[2026-03-15 19:48:24] -rw-r--r--. 1 boinc boinc       530 Mar 15 19:47 boinc_task_state.xml
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc 180541813 Mar 15 19:47 HITS.48955006._052234.pool.root.1
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc      1032 Mar 15 19:47 memory_monitor_summary.json
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc    283292 Mar 15 19:47 log.48955006._052234.job.log.tgz.1
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc      6362 Mar 15 19:47 heartbeat.json
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc        95 Mar 15 19:48 pilot_heartbeat.json
[2026-03-15 19:48:24] -rw-r--r--. 1 boinc boinc      8192 Mar 15 19:48 boinc_mmap_file
[2026-03-15 19:48:24] -rw-r--r--. 1 boinc boinc        27 Mar 15 19:48 wrapper_checkpoint.txt
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc      5017 Mar 15 19:48 pilotlog.txt
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc    651552 Mar 15 19:48 log.48955006._052234.job.log.1
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc       357 Mar 15 19:48 output.list
[2026-03-15 19:48:24] -rw-r--r--. 1 boinc boinc       620 Mar 15 19:48 runtime_log
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc    952320 Mar 15 19:48 result.tar.gz
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc       661 Mar 15 19:48 vezMDmL6jL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmIWrLDmrwyCNn.diag
[2026-03-15 19:48:24] -rw-r--r--. 1 boinc boinc      9221 Mar 15 19:48 runtime_log.err
[2026-03-15 19:48:24] -rw-r--r--. 1 boinc boinc     21878 Mar 15 19:48 stderr.txt
[2026-03-15 19:48:24] HITS file was successfully produced:
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc 180541813 Mar 15 19:47 shared/HITS.pool.root.1
[2026-03-15 19:48:24]  *** Contents of shared directory: ***
[2026-03-15 19:48:24] total 607728
[2026-03-15 19:48:24] -rw-r--r--. 2 boinc boinc     15845 Mar 15 18:33 start_atlas.sh
[2026-03-15 19:48:24] -rw-r--r--. 2 boinc boinc    597533 Mar 15 18:33 input.tar.gz
[2026-03-15 19:48:24] -rw-r--r--. 2 boinc boinc 440190681 Mar 15 18:33 ATLAS.root_0
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc 180541813 Mar 15 19:47 HITS.pool.root.1
[2026-03-15 19:48:24] -rw-------. 1 boinc boinc    952320 Mar 15 19:48 result.tar.gz
19:48:26 (2625479): run_atlas exited; CPU time 16963.460841
19:48:26 (2625479): called boinc_finish(0)

</stderr_txt>
]]>

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