Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:37:59 (616): wrapper (7.7.26015): starting
14:37:59 (616): wrapper: running run_atlas (--nthreads 12)
[2026-03-14 14:37:59] Arguments: --nthreads 12
[2026-03-14 14:37:59] Threads: 12
[2026-03-14 14:37:59] Checking for CVMFS
[2026-03-14 14:37:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 14:37:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 14:37:59] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 14:37:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 14:37:59] 2.11.2.0 2998 259284 102548 157286 3 52 16642647 20275201 1 130560 0 108706175 99.944 12608663 30500 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-14 14:37:59] CVMFS is ok
[2026-03-14 14:37:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 14:37:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 14:37:59] Further information can be found at the LHC@home message board.
[2026-03-14 14:37:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 14:37:59] Checking for apptainer binary...
[2026-03-14 14:37:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 14:37:59] Running /usr/bin/apptainer --version
[2026-03-14 14:37:59] apptainer version 1.3.2-1.el7
[2026-03-14 14:37:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 14:38:01] c-205-12.aglt2.org
[2026-03-14 14:38:01] apptainer works
[2026-03-14 14:38:01] Set ATHENA_PROC_NUMBER=12
[2026-03-14 14:38:01] Set ATHENA_CORE_NUMBER=12
[2026-03-14 14:38:01] Starting ATLAS job with PandaID=7046912882
[2026-03-14 14:38:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 15:43:43]  *** The last 200 lines of the pilot log: ***
[2026-03-14 15:43:43]  filetype=log
[2026-03-14 15:43:43]  guid=14f6f637-45e6-4289-94d4-c6c09e6b8eac
[2026-03-14 15:43:43]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-14 15:43:43]  is_altstaged=None
[2026-03-14 15:43:43]  is_tar=False
[2026-03-14 15:43:43]  lfn=log.48955010._043825.job.log.tgz.1
[2026-03-14 15:43:43]  mtime=0
[2026-03-14 15:43:43]  protocol_id=None
[2026-03-14 15:43:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-14 15:43:43]  replicas=None
[2026-03-14 15:43:43]  scope=mc23_13p6TeV
[2026-03-14 15:43:43]  status=None
[2026-03-14 15:43:43]  status_code=0
[2026-03-14 15:43:43]  storage_token=
[2026-03-14 15:43:43]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7046912882/log.48955010._043825.job.log.tgz.1
[2026-03-14 15:43:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/ca/log.48955010._043825.job.log.tgz.1
[2026-03-14 15:43:43]  workdir=None
[2026-03-14 15:43:43] ]
[2026-03-14 15:43:43] 2026-03-14 19:43:08,588 | INFO     | transferring file log.48955010._043825.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7046912882/log.48955010._043825.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-14 15:43:43] 2026-03-14 19:43:08,589 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7046912882/log.48955010._043825.job.log.tgz.1 /tmp/boinchome/slots/0/log.48955010._043825.job
[2026-03-14 15:43:43] 2026-03-14 19:43:08,610 | INFO     | adding to output.list: log.48955010._043825.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/ca/log.48955010._043825.job.log.tg
[2026-03-14 15:43:43] 2026-03-14 19:43:08,610 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-14 15:43:43] 2026-03-14 19:43:08,611 | INFO     | summary of transferred files:
[2026-03-14 15:43:43] 2026-03-14 19:43:08,611 | INFO     |  -- lfn=log.48955010._043825.job.log.tgz.1, status_code=0, status=transferred
[2026-03-14 15:43:43] 2026-03-14 19:43:08,611 | INFO     | stage-out finished correctly
[2026-03-14 15:43:43] 2026-03-14 19:43:09,589 | INFO     | time since job start (3888s) is within the limit (345600.0s)
[2026-03-14 15:43:43] 2026-03-14 19:43:10,983 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 15:43:43] 2026-03-14 19:43:11,061 | INFO     | job 7046912882 has state=finished
[2026-03-14 15:43:43] 2026-03-14 19:43:11,061 | INFO     | preparing for final server update for job 7046912882 in state='finished'
[2026-03-14 15:43:43] 2026-03-14 19:43:11,061 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7046912882/jobReport.json
[2026-03-14 15:43:43] 2026-03-14 19:43:11,064 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-14 15:43:43] 2026-03-14 19:43:11,065 | INFO     | this job has now completed (state=finished)
[2026-03-14 15:43:43] 2026-03-14 19:43:11,065 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 15:43:43] 2026-03-14 19:43:11,065 | INFO     | log transfer has been attempted: DONE
[2026-03-14 15:43:43] 2026-03-14 19:43:11,065 | INFO     | job 7046912882 has finished - writing final server update
[2026-03-14 15:43:43] 2026-03-14 19:43:11,066 | INFO     | total number of processed events: 400 (read)
[2026-03-14 15:43:43] 2026-03-14 19:43:11,069 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7046912882/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 15:43:43] 2026-03-14 19:43:11,069 | INFO     | extracted standard info from prmon json
[2026-03-14 15:43:43] 2026-03-14 19:43:11,070 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 15:43:43] 2026-03-14 19:43:11,070 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 15:43:43] 2026-03-14 19:43:11,070 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 15:43:43] 2026-03-14 19:43:11,070 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 15:43:43] 2026-03-14 19:43:11,071 | INFO     | fitting pss+swap vs Time
[2026-03-14 15:43:43] 2026-03-14 19:43:11,071 | INFO     | sum of square deviations: 57407588.0
[2026-03-14 15:43:43] 2026-03-14 19:43:11,072 | INFO     | sum of deviations: -6236984772.0
[2026-03-14 15:43:43] 2026-03-14 19:43:11,072 | INFO     | mean x: 1773515538.0
[2026-03-14 15:43:43] 2026-03-14 19:43:11,072 | INFO     | mean y: 2801766.4736842103
[2026-03-14 15:43:43] 2026-03-14 19:43:11,072 | INFO     | intersect: 192684462654.42786
[2026-03-14 15:43:43] 2026-03-14 19:43:11,072 | INFO     | chi2: 0.04423436888137011
[2026-03-14 15:43:43] 2026-03-14 19:43:11,072 | INFO     | current memory leak: -108.64 B/s (using 57 data points, chi2=0.04)
[2026-03-14 15:43:43] 2026-03-14 19:43:11,073 | INFO     | could have reported an average CPU frequency of 1684 MHz (6 samples)
[2026-03-14 15:43:43] 2026-03-14 19:43:11,073 | INFO     | ..............................
[2026-03-14 15:43:43] 2026-03-14 19:43:11,073 | INFO     | . Timing measurements:
[2026-03-14 15:43:43] 2026-03-14 19:43:11,073 | INFO     | . get job = 0 s
[2026-03-14 15:43:43] 2026-03-14 19:43:11,073 | INFO     | . initial setup = 7 s
[2026-03-14 15:43:43] 2026-03-14 19:43:11,073 | INFO     | . payload setup = 7 s
[2026-03-14 15:43:43] 2026-03-14 19:43:11,073 | INFO     | . stage-in = 0 s
[2026-03-14 15:43:43] 2026-03-14 19:43:11,073 | INFO     | . payload execution = 3863 s
[2026-03-14 15:43:43] 2026-03-14 19:43:11,074 | INFO     | . stage-out = 0 s
[2026-03-14 15:43:43] 2026-03-14 19:43:11,074 | INFO     | . log creation = 0 s
[2026-03-14 15:43:43] 2026-03-14 19:43:11,074 | INFO     | ..............................
[2026-03-14 15:43:43] 2026-03-14 19:43:11,149 | INFO     | 
[2026-03-14 15:43:43] 2026-03-14 19:43:11,149 | INFO     | job summary report
[2026-03-14 15:43:43] 2026-03-14 19:43:11,149 | INFO     | --------------------------------------------------
[2026-03-14 15:43:43] 2026-03-14 19:43:11,149 | INFO     | PanDA job id: 7046912882
[2026-03-14 15:43:43] 2026-03-14 19:43:11,149 | INFO     | task id: 48955010
[2026-03-14 15:43:43] 2026-03-14 19:43:11,150 | INFO     | errors: (none)
[2026-03-14 15:43:43] 2026-03-14 19:43:11,150 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 15:43:43] 2026-03-14 19:43:11,150 | INFO     | pilot state: finished 
[2026-03-14 15:43:43] 2026-03-14 19:43:11,150 | INFO     | transexitcode: 0
[2026-03-14 15:43:43] 2026-03-14 19:43:11,150 | INFO     | exeerrorcode: 0
[2026-03-14 15:43:43] 2026-03-14 19:43:11,150 | INFO     | exeerrordiag: 
[2026-03-14 15:43:43] 2026-03-14 19:43:11,151 | INFO     | exitcode: 0
[2026-03-14 15:43:43] 2026-03-14 19:43:11,151 | INFO     | exitmsg: OK
[2026-03-14 15:43:43] 2026-03-14 19:43:11,151 | INFO     | cpuconsumptiontime: 41832 s
[2026-03-14 15:43:43] 2026-03-14 19:43:11,151 | INFO     | nevents: 400
[2026-03-14 15:43:43] 2026-03-14 19:43:11,151 | INFO     | neventsw: 0
[2026-03-14 15:43:43] 2026-03-14 19:43:11,151 | INFO     | pid: 8890
[2026-03-14 15:43:43] 2026-03-14 19:43:11,152 | INFO     | pgrp: 8890
[2026-03-14 15:43:43] 2026-03-14 19:43:11,152 | INFO     | corecount: 12
[2026-03-14 15:43:43] 2026-03-14 19:43:11,152 | INFO     | event service: False
[2026-03-14 15:43:43] 2026-03-14 19:43:11,152 | INFO     | sizes: {0: 2280181, 11: 2280181, 3873: 2305984, 3874: 2305983, 3876: 2315037, 3878: 2315415}
[2026-03-14 15:43:43] 2026-03-14 19:43:11,152 | INFO     | --------------------------------------------------
[2026-03-14 15:43:43] 2026-03-14 19:43:11,152 | INFO     | 
[2026-03-14 15:43:43] 2026-03-14 19:43:11,153 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-14 15:43:43] 2026-03-14 19:43:11,176 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,176 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,176 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,177 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,177 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,177 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,177 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,177 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,177 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,178 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,179 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,179 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,179 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 15:43:43] 2026-03-14 19:43:11,179 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,179 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 15:43:43] 2026-03-14 19:43:11,179 | INFO     | job 7046912882 has completed (purged errors)
[2026-03-14 15:43:43] 2026-03-14 19:43:11,180 | INFO     | overall cleanup function is called
[2026-03-14 15:43:43] 2026-03-14 19:43:11,584 | WARNING  | process 8890 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 15:43:43] 2026-03-14 19:43:11,655 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 15:43:43] 2026-03-14 19:43:11,739 | INFO     | number of running child processes to parent process 8890: 1
[2026-03-14 15:43:43] 2026-03-14 19:43:11,739 | INFO     | maximum number of monitored processes: 6
[2026-03-14 15:43:43] 2026-03-14 19:43:11,739 | INFO     | aborting job monitoring since job object (job id=7046912882) has expired
[2026-03-14 15:43:43] 2026-03-14 19:43:12,188 | INFO     | --- collectZombieJob: --- 10, [8890]
[2026-03-14 15:43:43] 2026-03-14 19:43:12,188 | INFO     | zombie collector waiting for pid 8890
[2026-03-14 15:43:43] 2026-03-14 19:43:12,188 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 15:43:43] 2026-03-14 19:43:12,188 | INFO     | collected zombie processes
[2026-03-14 15:43:43] 2026-03-14 19:43:12,188 | INFO     | will attempt to kill all subprocesses of pid=8890
[2026-03-14 15:43:43] 2026-03-14 19:43:12,274 | INFO     | process IDs to be killed: [8890] (in reverse order)
[2026-03-14 15:43:43] 2026-03-14 19:43:12,323 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 15:43:43] 2026-03-14 19:43:12,323 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 15:43:43] 2026-03-14 19:43:12,327 | INFO     | did not find any defunct processes belonging to 8890
[2026-03-14 15:43:43] 2026-03-14 19:43:12,330 | INFO     | did not find any defunct processes belonging to 8890
[2026-03-14 15:43:43] 2026-03-14 19:43:12,330 | INFO     | ready for new job
[2026-03-14 15:43:43] 2026-03-14 19:43:12,331 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 15:43:43] 2026-03-14 19:43:12,332 | INFO     | **************************************
[2026-03-14 15:43:43] 2026-03-14 19:43:12,332 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 15:43:43] 2026-03-14 19:43:12,332 | INFO     | **************************************
[2026-03-14 15:43:43] 2026-03-14 19:43:12,332 | INFO     | 
[2026-03-14 15:43:43] 2026-03-14 19:43:12,332 | INFO     | architecture information:
[2026-03-14 15:43:43] 2026-03-14 19:43:12,333 | INFO     | executing command: cat /etc/os-release
[2026-03-14 15:43:43] 2026-03-14 19:43:12,347 | INFO     | cat /etc/os-release:
[2026-03-14 15:43:43] NAME="CentOS Linux"
[2026-03-14 15:43:43] VERSION="7 (Core)"
[2026-03-14 15:43:43] ID="centos"
[2026-03-14 15:43:43] ID_LIKE="rhel fedora"
[2026-03-14 15:43:43] VERSION_ID="7"
[2026-03-14 15:43:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 15:43:43] ANSI_COLOR="0;31"
[2026-03-14 15:43:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 15:43:43] HOME_URL="https://www.centos.org/"
[2026-03-14 15:43:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 15:43:43] 
[2026-03-14 15:43:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 15:43:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 15:43:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 15:43:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 15:43:43] 
[2026-03-14 15:43:43] 2026-03-14 19:43:12,347 | INFO     | **************************************
[2026-03-14 15:43:43] 2026-03-14 19:43:12,850 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-14 15:43:43] 2026-03-14 19:43:12,866 | INFO     | sufficient remaining disk space (28905046016 B)
[2026-03-14 15:43:43] 2026-03-14 19:43:12,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 15:43:43] 2026-03-14 19:43:12,866 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 15:43:43] 2026-03-14 19:43:12,866 | INFO     | update_server=False
[2026-03-14 15:43:43] 2026-03-14 19:43:12,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 15:43:43] 2026-03-14 19:43:12,867 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 15:43:43] 2026-03-14 19:43:12,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 15:43:43] 2026-03-14 19:43:12,868 | INFO     | aborting loop
[2026-03-14 15:43:43] 2026-03-14 19:43:12,868 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 15:43:43] 2026-03-14 19:43:12,927 | INFO     | all data control threads have been joined
[2026-03-14 15:43:43] 2026-03-14 19:43:13,559 | INFO     | all payload control threads have been joined
[2026-03-14 15:43:43] 2026-03-14 19:43:13,869 | INFO     | [job] job monitor thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:13,872 | INFO     | [job] retrieve thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:13,873 | INFO     | [job] queue monitor thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:13,932 | INFO     | [data] control thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:13,978 | INFO     | all job control threads have been joined
[2026-03-14 15:43:43] 2026-03-14 19:43:14,042 | INFO     | [payload] validate_post thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:14,042 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:14,052 | INFO     | [data] copytool_in thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:14,057 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:14,200 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 15:43:43] 2026-03-14 19:43:14,565 | INFO     | [payload] control thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:14,734 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:14,984 | INFO     | [job] control thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:15,027 | INFO     | [payload] failed_post thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:15,048 | INFO     | [job] validate thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:15,061 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:16,206 | INFO     | [data] copytool_out thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:16,874 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 15:43:43] 2026-03-14 19:43:27,089 | INFO     | [monitor] cgroup control has ended
[2026-03-14 15:43:43] 2026-03-14 19:43:28,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918233569088)>', '<ExcThread(monitor, started 139917199922944)>']
[2026-03-14 15:43:43] 2026-03-14 19:43:33,830 | INFO     | all workflow threads have been joined
[2026-03-14 15:43:43] 2026-03-14 19:43:33,830 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 15:43:43] 2026-03-14 19:43:33,830 | INFO     | traces error code: 0
[2026-03-14 15:43:43] 2026-03-14 19:43:33,831 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 15:43:43] 2026-03-14 19:43:42,793 | INFO     | PID=4512 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-14 15:43:43] 2026-03-14 19:43:42,794 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 15:43:43] 2026-03-14 19:43:42,794 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 15:43:43] 2026-03-14 19:43:42,794 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 15:43:43] 2026-03-14 19:43:42,794 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 15:43:43] 2026-03-14 19:43:42,794 | INFO     | [monitor] control thread has ended
[2026-03-14 15:43:43] 2026-03-14 19:43:42,895 [wrapper] ==== pilot stdout END ====
[2026-03-14 15:43:43] 2026-03-14 19:43:42,898 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 15:43:43] 2026-03-14 19:43:42,902 [wrapper] pilotpid: 4512
[2026-03-14 15:43:43] 2026-03-14 19:43:42,905 [wrapper] Pilot exit status: 0
[2026-03-14 15:43:43] 2026-03-14 19:43:42,920 [wrapper] pandaids: 7046912882
[2026-03-14 15:43:43] 2026-03-14 19:43:42,958 [wrapper] cleanup supervisor_pilot 27457 4513
[2026-03-14 15:43:43] 2026-03-14 19:43:42,962 [wrapper] Test setup, not cleaning
[2026-03-14 15:43:43] 2026-03-14 19:43:42,966 [wrapper] apfmon messages muted
[2026-03-14 15:43:43] 2026-03-14 19:43:42,970 [wrapper] ==== wrapper stdout END ====
[2026-03-14 15:43:43] 2026-03-14 19:43:42,974 [wrapper] ==== wrapper stderr END ====
[2026-03-14 15:43:43]  *** Error codes and diagnostics ***
[2026-03-14 15:43:43]     "exeErrorCode": 0,
[2026-03-14 15:43:43]     "exeErrorDiag": "",
[2026-03-14 15:43:43]     "pilotErrorCode": 0,
[2026-03-14 15:43:43]     "pilotErrorDiag": "",
[2026-03-14 15:43:43]  *** Listing of results directory ***
[2026-03-14 15:43:43] total 612436
[2026-03-14 15:43:43] -rw-r--r-- 1 boincer umatlas    585013 Mar 14 09:10 pilot3.tar.gz
[2026-03-14 15:43:43] -rw-r--r-- 1 boincer umatlas      5111 Mar 14 09:10 queuedata.json
[2026-03-14 15:43:43] -rwx------ 1 boincer umatlas     36322 Mar 14 09:10 runpilot2-wrapper.sh
[2026-03-14 15:43:43] -rw-r--r-- 1 boincer umatlas       100 Mar 14 14:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 15:43:43] -rwxr-xr-x 1 boincer umatlas      7986 Mar 14 14:37 run_atlas
[2026-03-14 15:43:43] -rw-r--r-- 1 boincer umatlas       105 Mar 14 14:37 job.xml
[2026-03-14 15:43:43] -rw-r--r-- 2 boincer umatlas 442438058 Mar 14 14:37 EVNT.46701403._001896.pool.root.1
[2026-03-14 15:43:43] -rw-r--r-- 2 boincer umatlas     15845 Mar 14 14:37 start_atlas.sh
[2026-03-14 15:43:43] drwxrwx--x 2 boincer umatlas      4096 Mar 14 14:37 shared
[2026-03-14 15:43:43] -rw-r--r-- 2 boincer umatlas    597529 Mar 14 14:37 input.tar.gz
[2026-03-14 15:43:43] -rw-r--r-- 1 boincer umatlas         0 Mar 14 14:37 boinc_lockfile
[2026-03-14 15:43:43] -rw-r--r-- 1 boincer umatlas      2564 Mar 14 14:38 pandaJob.out
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas        57 Mar 14 14:38 setup.sh.local
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas   1005889 Mar 14 14:38 agis_schedconf.cvmfs.json
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas   1511579 Mar 14 14:38 agis_ddmendpoints.agis.ALL.json
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas       434 Mar 14 14:38 workernode_map.json
[2026-03-14 15:43:43] drwx------ 5 boincer umatlas      4096 Mar 14 14:38 pilot3
[2026-03-14 15:43:43] -rw-r--r-- 1 boincer umatlas      5953 Mar 14 15:40 init_data.xml
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas 178778767 Mar 14 15:42 HITS.48955010._043825.pool.root.1
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas      1044 Mar 14 15:43 memory_monitor_summary.json
[2026-03-14 15:43:43] -rw-r--r-- 1 boincer umatlas       530 Mar 14 15:43 boinc_task_state.xml
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas        95 Mar 14 15:43 pilot_heartbeat.json
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas    416054 Mar 14 15:43 log.48955010._043825.job.log.tgz.1
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas      6414 Mar 14 15:43 heartbeat.json
[2026-03-14 15:43:43] -rw-r--r-- 1 boincer umatlas      8192 Mar 14 15:43 boinc_mmap_file
[2026-03-14 15:43:43] -rw-r--r-- 1 boincer umatlas        27 Mar 14 15:43 wrapper_checkpoint.txt
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas       744 Mar 14 15:43 pilotlog.txt
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas    574146 Mar 14 15:43 log.48955010._043825.job.log.1
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas       357 Mar 14 15:43 output.list
[2026-03-14 15:43:43] -rw-r--r-- 1 boincer umatlas       620 Mar 14 15:43 runtime_log
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas   1003520 Mar 14 15:43 result.tar.gz
[2026-03-14 15:43:43] -rw-r--r-- 1 boincer umatlas      9343 Mar 14 15:43 runtime_log.err
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas       659 Mar 14 15:43 MmjNDmVwdL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmr3sLDm5wMDRn.diag
[2026-03-14 15:43:43] -rw-r--r-- 1 boincer umatlas     21283 Mar 14 15:43 stderr.txt
[2026-03-14 15:43:43] HITS file was successfully produced:
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas 178778767 Mar 14 15:42 shared/HITS.pool.root.1
[2026-03-14 15:43:43]  *** Contents of shared directory: ***
[2026-03-14 15:43:43] total 608252
[2026-03-14 15:43:43] -rw-r--r-- 2 boincer umatlas 442438058 Mar 14 14:37 ATLAS.root_0
[2026-03-14 15:43:43] -rw-r--r-- 2 boincer umatlas     15845 Mar 14 14:37 start_atlas.sh
[2026-03-14 15:43:43] -rw-r--r-- 2 boincer umatlas    597529 Mar 14 14:37 input.tar.gz
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas 178778767 Mar 14 15:42 HITS.pool.root.1
[2026-03-14 15:43:43] -rw------- 1 boincer umatlas   1003520 Mar 14 15:43 result.tar.gz
15:43:44 (616): run_atlas exited; CPU time 41814.159345
15:43:44 (616): called boinc_finish(0)

</stderr_txt>
]]>

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