Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:18:21 (2448585): wrapper (7.7.26015): starting
05:18:21 (2448585): wrapper: running run_atlas (--nthreads 3)
[2026-03-15 05:18:21] Arguments: --nthreads 3
[2026-03-15 05:18:21] Threads: 3
[2026-03-15 05:18:21] Checking for CVMFS
[2026-03-15 05:18:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 05:18:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 05:18:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 05:18:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 05:18:22] 2.9.2.0 12665 18366 74120 157301 2 49 22539466 36864000 0 130560 0 6817788 99.981 691413 15455 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 05:18:22] CVMFS is ok
[2026-03-15 05:18:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 05:18:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 05:18:22] Further information can be found at the LHC@home message board.
[2026-03-15 05:18:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 05:18:22] Checking for apptainer binary...
[2026-03-15 05:18:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 05:18:22] Running /usr/bin/apptainer --version
[2026-03-15 05:18:22] apptainer version 1.4.1-1.1
[2026-03-15 05:18:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 05:18:22] thA335
[2026-03-15 05:18:22] apptainer works
[2026-03-15 05:18:22] Set ATHENA_PROC_NUMBER=3
[2026-03-15 05:18:22] Set ATHENA_CORE_NUMBER=3
[2026-03-15 05:18:22] Starting ATLAS job with PandaID=7046926960
[2026-03-15 05:18:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 06:46:00]  *** The last 200 lines of the pilot log: ***
[2026-03-15 06:46:00] 2026-03-15 05:45:28,498 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 06:46:00] 2026-03-15 05:45:28,498 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 06:46:00] 2026-03-15 05:45:28,498 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 06:46:00] 2026-03-15 05:45:28,499 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 06:46:00] 2026-03-15 05:45:28,499 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 06:46:00] 2026-03-15 05:45:28,499 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 06:46:00] 2026-03-15 05:45:28,499 | INFO     | job 7046926960 has completed (purged errors)
[2026-03-15 06:46:00] 2026-03-15 05:45:28,500 | INFO     | overall cleanup function is called
[2026-03-15 06:46:00] 2026-03-15 05:45:29,508 | INFO     | --- collectZombieJob: --- 10, [2457057]
[2026-03-15 06:46:00] 2026-03-15 05:45:29,508 | INFO     | zombie collector waiting for pid 2457057
[2026-03-15 06:46:00] 2026-03-15 05:45:29,508 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 06:46:00] 2026-03-15 05:45:29,509 | INFO     | collected zombie processes
[2026-03-15 06:46:00] 2026-03-15 05:45:29,509 | INFO     | will attempt to kill all subprocesses of pid=2457057
[2026-03-15 06:46:00] 2026-03-15 05:45:29,587 | INFO     | process IDs to be killed: [2457057] (in reverse order)
[2026-03-15 06:46:00] 2026-03-15 05:45:29,613 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 06:46:00] 2026-03-15 05:45:29,614 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 06:46:00] 2026-03-15 05:45:29,619 | INFO     | did not find any defunct processes belonging to 2457057
[2026-03-15 06:46:00] 2026-03-15 05:45:29,623 | INFO     | did not find any defunct processes belonging to 2457057
[2026-03-15 06:46:00] 2026-03-15 05:45:29,623 | INFO     | ready for new job
[2026-03-15 06:46:00] 2026-03-15 05:45:29,624 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 06:46:00] 2026-03-15 05:45:29,626 | INFO     | **************************************
[2026-03-15 06:46:00] 2026-03-15 05:45:29,626 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 06:46:00] 2026-03-15 05:45:29,627 | INFO     | **************************************
[2026-03-15 06:46:00] 2026-03-15 05:45:29,627 | INFO     | 
[2026-03-15 06:46:00] 2026-03-15 05:45:29,628 | INFO     | architecture information:
[2026-03-15 06:46:00] 2026-03-15 05:45:29,628 | INFO     | executing command: cat /etc/os-release
[2026-03-15 06:46:00] 2026-03-15 05:45:29,649 | INFO     | cat /etc/os-release:
[2026-03-15 06:46:00] NAME="CentOS Linux"
[2026-03-15 06:46:00] VERSION="7 (Core)"
[2026-03-15 06:46:00] ID="centos"
[2026-03-15 06:46:00] ID_LIKE="rhel fedora"
[2026-03-15 06:46:00] VERSION_ID="7"
[2026-03-15 06:46:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 06:46:00] ANSI_COLOR="0;31"
[2026-03-15 06:46:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 06:46:00] HOME_URL="https://www.centos.org/"
[2026-03-15 06:46:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 06:46:00] 
[2026-03-15 06:46:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 06:46:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 06:46:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 06:46:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 06:46:00] 
[2026-03-15 06:46:00] 2026-03-15 05:45:29,649 | INFO     | **************************************
[2026-03-15 06:46:00] 2026-03-15 05:45:30,150 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 06:46:00] 2026-03-15 05:45:30,167 | INFO     | sufficient remaining disk space (837949587456 B)
[2026-03-15 06:46:00] 2026-03-15 05:45:30,167 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 06:46:00] 2026-03-15 05:45:30,167 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 06:46:00] 2026-03-15 05:45:30,167 | INFO     | update_server=False
[2026-03-15 06:46:00] 2026-03-15 05:45:30,167 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 06:46:00] 2026-03-15 05:45:30,167 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 06:46:00] 2026-03-15 05:45:30,167 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 06:46:00] 2026-03-15 05:45:30,167 | INFO     | aborting loop
[2026-03-15 06:46:00] 2026-03-15 05:45:30,386 | INFO     | all data control threads have been joined
[2026-03-15 06:46:00] 2026-03-15 05:45:31,173 | INFO     | [job] queue monitor thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:31,174 | INFO     | [job] retrieve thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:31,175 | INFO     | [job] job monitor thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:31,209 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:31,221 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:31,329 | INFO     | all job control threads have been joined
[2026-03-15 06:46:00] 2026-03-15 05:45:31,348 | INFO     | [data] copytool_in thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:31,365 | INFO     | all payload control threads have been joined
[2026-03-15 06:46:00] 2026-03-15 05:45:31,376 | INFO     | [payload] failed_post thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:31,392 | INFO     | [data] control thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:31,587 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 06:46:00] 2026-03-15 05:45:32,275 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:32,335 | INFO     | [job] control thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:32,371 | INFO     | [payload] control thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:32,544 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:32,544 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 06:46:00] 2026-03-15 05:45:32,592 | INFO     | [job] validate thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:32,706 | INFO     | [payload] validate_post thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:33,593 | INFO     | [data] copytool_out thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:36,546 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 06:46:00] 2026-03-15 05:45:45,980 | INFO     | [monitor] cgroup control has ended
[2026-03-15 06:46:00] 2026-03-15 05:45:46,991 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140697167054656)>', '<ExcThread(monitor, started 140696535160576)>']
[2026-03-15 06:46:00] 2026-03-15 05:45:52,017 | INFO     | all workflow threads have been joined
[2026-03-15 06:46:00] 2026-03-15 05:45:52,019 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 06:46:00] 2026-03-15 05:45:52,019 | INFO     | traces error code: 0
[2026-03-15 06:46:00] 2026-03-15 05:45:52,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 06:46:00] 2026-03-15 05:46:00,242 | INFO     | PID=2452624 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 06:46:00] 2026-03-15 05:46:00,243 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 06:46:00] 2026-03-15 05:46:00,243 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 06:46:00] 2026-03-15 05:46:00,243 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 06:46:00] 2026-03-15 05:46:00,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 06:46:00] 2026-03-15 05:46:00,243 | INFO     | [monitor] control thread has ended
[2026-03-15 06:46:00] 2026-03-15 05:46:00,287 [wrapper] ==== pilot stdout END ====
[2026-03-15 06:46:00] 2026-03-15 05:46:00,290 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 06:46:00] 2026-03-15 05:46:00,293 [wrapper] pilotpid: 2452624
[2026-03-15 06:46:00] 2026-03-15 05:46:00,295 [wrapper] Pilot exit status: 0
[2026-03-15 06:46:00] 2026-03-15 05:46:00,303 [wrapper] pandaids: 7046926960
[2026-03-15 06:46:00] 2026-03-15 05:46:00,319 [wrapper] cleanup supervisor_pilot 2462260 2452625
[2026-03-15 06:46:00] 2026-03-15 05:46:00,322 [wrapper] Test setup, not cleaning
[2026-03-15 06:46:00] 2026-03-15 05:46:00,325 [wrapper] apfmon messages muted
[2026-03-15 06:46:00] 2026-03-15 05:46:00,328 [wrapper] ==== wrapper stdout END ====
[2026-03-15 06:46:00] 2026-03-15 05:46:00,330 [wrapper] ==== wrapper stderr END ====
[2026-03-15 06:46:00]  *** Error codes and diagnostics ***
[2026-03-15 06:46:00]     "exeErrorCode": 0,
[2026-03-15 06:46:00]     "exeErrorDiag": "",
[2026-03-15 06:46:00]     "pilotErrorCode": 0,
[2026-03-15 06:46:00]     "pilotErrorDiag": "",
[2026-03-15 06:46:00]  *** Listing of results directory ***
[2026-03-15 06:46:00] total 617716
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc    585013 Mar 14 16:02 pilot3.tar.gz
[2026-03-15 06:46:00] -rwx------ 1 boinc boinc     36322 Mar 14 16:03 runpilot2-wrapper.sh
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc      5111 Mar 14 16:05 queuedata.json
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc       100 Mar 15 05:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 06:46:00] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 05:18 run_atlas
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc       105 Mar 15 05:18 job.xml
[2026-03-15 06:46:00] -rw-r--r-- 2 boinc boinc 444252439 Mar 15 05:18 EVNT.46701403._001947.pool.root.1
[2026-03-15 06:46:00] -rw-r--r-- 2 boinc boinc    597532 Mar 15 05:18 input.tar.gz
[2026-03-15 06:46:00] -rw-r--r-- 2 boinc boinc     15845 Mar 15 05:18 start_atlas.sh
[2026-03-15 06:46:00] drwxrwx--x 2 boinc boinc      4096 Mar 15 05:18 shared
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc         0 Mar 15 05:18 boinc_setup_complete
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc      6195 Mar 15 05:18 init_data.xml
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc         0 Mar 15 05:18 boinc_lockfile
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc      2563 Mar 15 05:18 pandaJob.out
[2026-03-15 06:46:00] -rw------- 1 boinc boinc   1006481 Mar 15 05:18 agis_schedconf.cvmfs.json
[2026-03-15 06:46:00] -rw------- 1 boinc boinc   1511579 Mar 15 05:18 agis_ddmendpoints.agis.ALL.json
[2026-03-15 06:46:00] -rw------- 1 boinc boinc       425 Mar 15 05:18 workernode_map.json
[2026-03-15 06:46:00] drwx------ 5 boinc boinc      4096 Mar 15 05:18 pilot3
[2026-03-15 06:46:00] -rw------- 1 boinc boinc 182316473 Mar 15 06:45 HITS.48955010._046194.pool.root.1
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc       530 Mar 15 06:45 boinc_task_state.xml
[2026-03-15 06:46:00] -rw------- 1 boinc boinc      1014 Mar 15 06:45 memory_monitor_summary.json
[2026-03-15 06:46:00] -rw------- 1 boinc boinc    262292 Mar 15 06:45 log.48955010._046194.job.log.tgz.1
[2026-03-15 06:46:00] -rw------- 1 boinc boinc      6305 Mar 15 06:45 heartbeat.json
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc      8192 Mar 15 06:45 boinc_mmap_file
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc        27 Mar 15 06:45 wrapper_checkpoint.txt
[2026-03-15 06:46:00] -rw------- 1 boinc boinc        95 Mar 15 06:46 pilot_heartbeat.json
[2026-03-15 06:46:00] -rw------- 1 boinc boinc       747 Mar 15 06:46 pilotlog.txt
[2026-03-15 06:46:00] -rw------- 1 boinc boinc    761258 Mar 15 06:46 log.48955010._046194.job.log.1
[2026-03-15 06:46:00] -rw------- 1 boinc boinc       357 Mar 15 06:46 output.list
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc       620 Mar 15 06:46 runtime_log
[2026-03-15 06:46:00] -rw------- 1 boinc boinc   1044480 Mar 15 06:46 result.tar.gz
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc      8896 Mar 15 06:46 runtime_log.err
[2026-03-15 06:46:00] -rw------- 1 boinc boinc       657 Mar 15 06:46 EvrKDmphfL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmDgqLDmqU4Bym.diag
[2026-03-15 06:46:00] -rw-r--r-- 1 boinc boinc     11414 Mar 15 06:46 stderr.txt
[2026-03-15 06:46:00] HITS file was successfully produced:
[2026-03-15 06:46:00] -rw------- 1 boinc boinc 182316473 Mar 15 06:45 shared/HITS.pool.root.1
[2026-03-15 06:46:00]  *** Contents of shared directory: ***
[2026-03-15 06:46:00] total 613516
[2026-03-15 06:46:00] -rw-r--r-- 2 boinc boinc 444252439 Mar 15 05:18 ATLAS.root_0
[2026-03-15 06:46:00] -rw-r--r-- 2 boinc boinc    597532 Mar 15 05:18 input.tar.gz
[2026-03-15 06:46:00] -rw-r--r-- 2 boinc boinc     15845 Mar 15 05:18 start_atlas.sh
[2026-03-15 06:46:00] -rw------- 1 boinc boinc 182316473 Mar 15 06:45 HITS.pool.root.1
[2026-03-15 06:46:00] -rw------- 1 boinc boinc   1044480 Mar 15 06:46 result.tar.gz
06:46:02 (2448585): run_atlas exited; CPU time 14618.534021
06:46:02 (2448585): called boinc_finish(0)

</stderr_txt>
]]>

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