Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:28:17 (77965): wrapper (7.7.26015): starting
14:28:17 (77965): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 14:28:17] Arguments: --nthreads 4
[2026-03-15 14:28:17] Threads: 4
[2026-03-15 14:28:17] Checking for CVMFS
[2026-03-15 14:28:17] No cvmfs_config command found, will try listing directly
[2026-03-15 14:28:17] CVMFS is ok
[2026-03-15 14:28:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 14:28:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 14:28:17] Further information can be found at the LHC@home message board.
[2026-03-15 14:28:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 14:28:17] Checking for apptainer binary...
[2026-03-15 14:28:17] which: no apptainer in ((null))
[2026-03-15 14:28:17] apptainer is not installed, using version from CVMFS
[2026-03-15 14:28:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 14:28:17] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot212/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-15 14:28:17] apptainer works
[2026-03-15 14:28:17] Set ATHENA_PROC_NUMBER=4
[2026-03-15 14:28:17] Set ATHENA_CORE_NUMBER=4
[2026-03-15 14:28:17] Starting ATLAS job with PandaID=7046911072
[2026-03-15 14:28:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot212/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 15:46:43]  *** The last 200 lines of the pilot log: ***
[2026-03-15 15:46:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-15 15:46:43]  replicas=None
[2026-03-15 15:46:43]  scope=mc23_13p6TeV
[2026-03-15 15:46:43]  status=None
[2026-03-15 15:46:43]  status_code=0
[2026-03-15 15:46:43]  storage_token=
[2026-03-15 15:46:43]  surl=/var/lib/boinc/var/slot212/slots/0/PanDA_Pilot-7046911072/log.48955010._043218.job.log.tgz.1
[2026-03-15 15:46:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b7/6a/log.48955010._043218.job.log.tgz.1
[2026-03-15 15:46:43]  workdir=None
[2026-03-15 15:46:43] ]
[2026-03-15 15:46:43] 2026-03-15 14:46:04,557 | INFO     | transferring file log.48955010._043218.job.log.tgz.1 from /var/lib/boinc/var/slot212/slots/0/PanDA_Pilot-7046911072/log.48955010._043218.job.log.tgz.1 to /var/lib/
[2026-03-15 15:46:43] 2026-03-15 14:46:04,557 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot212/slots/0/PanDA_Pilot-7046911072/log.48955010._043218.job.log.tgz.1 /var/lib/boinc/var/slot212/slots/0/
[2026-03-15 15:46:43] 2026-03-15 14:46:04,574 | INFO     | adding to output.list: log.48955010._043218.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b7/6a/log.48955010._043218.job.log.tg
[2026-03-15 15:46:43] 2026-03-15 14:46:04,575 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-15 15:46:43] 2026-03-15 14:46:04,575 | INFO     | summary of transferred files:
[2026-03-15 15:46:43] 2026-03-15 14:46:04,575 | INFO     |  -- lfn=log.48955010._043218.job.log.tgz.1, status_code=0, status=transferred
[2026-03-15 15:46:43] 2026-03-15 14:46:04,575 | INFO     | stage-out finished correctly
[2026-03-15 15:46:43] 2026-03-15 14:46:04,953 | INFO     | time since job start (4655s) is within the limit (345600.0s)
[2026-03-15 15:46:43] 2026-03-15 14:46:06,832 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-15 15:46:43] 2026-03-15 14:46:06,958 | INFO     | time since job start (4657s) is within the limit (345600.0s)
[2026-03-15 15:46:43] 2026-03-15 14:46:06,981 | WARNING  | process 95524 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 15:46:43] 2026-03-15 14:46:06,982 | INFO     | using path: /var/lib/boinc/var/slot212/slots/0/PanDA_Pilot-7046911072/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 15:46:43] 2026-03-15 14:46:07,459 | INFO     | number of running child processes to parent process 95524: 1
[2026-03-15 15:46:43] 2026-03-15 14:46:07,459 | INFO     | maximum number of monitored processes: 6
[2026-03-15 15:46:43] 2026-03-15 14:46:08,964 | INFO     | time since job start (4659s) is within the limit (345600.0s)
[2026-03-15 15:46:43] 2026-03-15 14:46:09,557 | INFO     | job 7046911072 has state=finished
[2026-03-15 15:46:43] 2026-03-15 14:46:09,557 | INFO     | preparing for final server update for job 7046911072 in state='finished'
[2026-03-15 15:46:43] 2026-03-15 14:46:09,557 | INFO     | reading metadata from: /var/lib/boinc/var/slot212/slots/0/PanDA_Pilot-7046911072/jobReport.json
[2026-03-15 15:46:43] 2026-03-15 14:46:09,559 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot212/slots/0/workernode_map.json
[2026-03-15 15:46:43] 2026-03-15 14:46:09,559 | INFO     | this job has now completed (state=finished)
[2026-03-15 15:46:43] 2026-03-15 14:46:09,559 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 15:46:43] 2026-03-15 14:46:09,559 | INFO     | log transfer has been attempted: DONE
[2026-03-15 15:46:43] 2026-03-15 14:46:09,559 | INFO     | job 7046911072 has finished - writing final server update
[2026-03-15 15:46:43] 2026-03-15 14:46:09,559 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2836163/.job.ad'
[2026-03-15 15:46:43] 2026-03-15 14:46:09,559 | INFO     | total number of processed events: 400 (read)
[2026-03-15 15:46:43] 2026-03-15 14:46:09,577 | INFO     | using path: /var/lib/boinc/var/slot212/slots/0/PanDA_Pilot-7046911072/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 15:46:43] 2026-03-15 14:46:09,577 | INFO     | extracted standard info from prmon json
[2026-03-15 15:46:43] 2026-03-15 14:46:09,577 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 15:46:43] 2026-03-15 14:46:09,577 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 15:46:43] 2026-03-15 14:46:09,577 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 15:46:43] 2026-03-15 14:46:09,577 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 15:46:43] 2026-03-15 14:46:09,578 | INFO     | fitting pss+swap vs Time
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | sum of square deviations: 101843770.0
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | sum of deviations: 219202523.99999985
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | mean x: 1773583709.0
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | mean y: 2341094.6666666665
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | intersect: -3815015878.0581384
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | chi2: 0.0004390241542854452
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | current memory leak: 2.15 B/s (using 69 data points, chi2=0.00)
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | could have reported an average CPU frequency of 3576 MHz (6 samples)
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | ..............................
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | . Timing measurements:
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | . get job = 0 s
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | . initial setup = 4 s
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | . payload setup = 4 s
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | . stage-in = 0 s
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | . payload execution = 4634 s
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | . stage-out = 0 s
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | . log creation = 0 s
[2026-03-15 15:46:43] 2026-03-15 14:46:09,579 | INFO     | ..............................
[2026-03-15 15:46:43] 2026-03-15 14:46:09,761 | INFO     | 
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | job summary report
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | --------------------------------------------------
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | PanDA job id: 7046911072
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | task id: 48955010
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | errors: (none)
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | pilot state: finished 
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | transexitcode: 0
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | exeerrorcode: 0
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | exeerrordiag: 
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | exitcode: 0
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | exitmsg: OK
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | cpuconsumptiontime: 17777 s
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | nevents: 400
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | neventsw: 0
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | pid: 95524
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | pgrp: 95524
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | corecount: 4
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | event service: False
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | sizes: {0: 2280194, 11: 2280194, 4642: 2306423, 4643: 2315445, 4646: 2315501, 4648: 2315695}
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | --------------------------------------------------
[2026-03-15 15:46:43] 2026-03-15 14:46:09,762 | INFO     | 
[2026-03-15 15:46:43] 2026-03-15 14:46:09,763 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot212/slots/0
[2026-03-15 15:46:43] 2026-03-15 14:46:09,782 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | job 7046911072 has completed (purged errors)
[2026-03-15 15:46:43] 2026-03-15 14:46:09,783 | INFO     | overall cleanup function is called
[2026-03-15 15:46:43] 2026-03-15 14:46:10,532 | INFO     | PID=82597 has CPU usage=13.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 15:46:43] 2026-03-15 14:46:10,532 | INFO     | .. there are 47 such processes running
[2026-03-15 15:46:43] 2026-03-15 14:46:10,791 | INFO     | --- collectZombieJob: --- 10, [95524]
[2026-03-15 15:46:43] 2026-03-15 14:46:10,791 | INFO     | zombie collector waiting for pid 95524
[2026-03-15 15:46:43] 2026-03-15 14:46:10,791 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 15:46:43] 2026-03-15 14:46:10,791 | INFO     | collected zombie processes
[2026-03-15 15:46:43] 2026-03-15 14:46:10,791 | INFO     | will attempt to kill all subprocesses of pid=95524
[2026-03-15 15:46:43] 2026-03-15 14:46:11,237 | INFO     | process IDs to be killed: [95524] (in reverse order)
[2026-03-15 15:46:43] 2026-03-15 14:46:11,463 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 15:46:43] 2026-03-15 14:46:11,463 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 15:46:43] 2026-03-15 14:46:11,495 | INFO     | did not find any defunct processes belonging to 95524
[2026-03-15 15:46:43] 2026-03-15 14:46:11,525 | INFO     | did not find any defunct processes belonging to 95524
[2026-03-15 15:46:43] 2026-03-15 14:46:11,525 | INFO     | ready for new job
[2026-03-15 15:46:43] 2026-03-15 14:46:11,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 15:46:43] 2026-03-15 14:46:11,526 | INFO     | **************************************
[2026-03-15 15:46:43] 2026-03-15 14:46:11,526 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 15:46:43] 2026-03-15 14:46:11,526 | INFO     | **************************************
[2026-03-15 15:46:43] 2026-03-15 14:46:11,527 | INFO     | 
[2026-03-15 15:46:43] 2026-03-15 14:46:11,533 | INFO     | architecture information:
[2026-03-15 15:46:43] 2026-03-15 14:46:11,533 | INFO     | executing command: cat /etc/os-release
[2026-03-15 15:46:43] 2026-03-15 14:46:11,547 | INFO     | cat /etc/os-release:
[2026-03-15 15:46:43] NAME="CentOS Linux"
[2026-03-15 15:46:43] VERSION="7 (Core)"
[2026-03-15 15:46:43] ID="centos"
[2026-03-15 15:46:43] ID_LIKE="rhel fedora"
[2026-03-15 15:46:43] VERSION_ID="7"
[2026-03-15 15:46:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 15:46:43] ANSI_COLOR="0;31"
[2026-03-15 15:46:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 15:46:43] HOME_URL="https://www.centos.org/"
[2026-03-15 15:46:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 15:46:43] 
[2026-03-15 15:46:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 15:46:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 15:46:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 15:46:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 15:46:43] 
[2026-03-15 15:46:43] 2026-03-15 14:46:11,547 | INFO     | **************************************
[2026-03-15 15:46:43] 2026-03-15 14:46:12,050 | INFO     | executing command: df -mP /var/lib/boinc/var/slot212/slots/0
[2026-03-15 15:46:43] 2026-03-15 14:46:12,065 | INFO     | sufficient remaining disk space (154955415552 B)
[2026-03-15 15:46:43] 2026-03-15 14:46:12,065 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 15:46:43] 2026-03-15 14:46:12,065 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 15:46:43] 2026-03-15 14:46:12,065 | INFO     | update_server=False
[2026-03-15 15:46:43] 2026-03-15 14:46:12,065 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 15:46:43] 2026-03-15 14:46:12,468 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-15 15:46:43] 2026-03-15 14:46:12,469 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-15 15:46:43] 2026-03-15 14:46:12,469 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 15:46:43] 2026-03-15 14:46:12,469 | INFO     | will abort loop
[2026-03-15 15:46:43] 2026-03-15 14:46:12,636 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 15:46:43] 2026-03-15 14:46:12,742 | INFO     | all job control threads have been joined
[2026-03-15 15:46:43] 2026-03-15 14:46:12,861 | INFO     | all payload control threads have been joined
[2026-03-15 15:46:43] 2026-03-15 14:46:12,888 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 15:46:43] 2026-03-15 14:46:12,888 | INFO     | all data control threads have been joined
[2026-03-15 15:46:43] 2026-03-15 14:46:13,070 | INFO     | [job] retrieve thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:13,474 | INFO     | [job] job monitor thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:13,491 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:13,614 | INFO     | [job] validate thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:13,639 | INFO     | [payload] failed_post thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:13,748 | INFO     | [job] control thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:13,867 | INFO     | [payload] control thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:13,894 | INFO     | [data] control thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:13,897 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:13,922 | INFO     | [data] copytool_in thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:14,078 | INFO     | [payload] validate_post thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:14,367 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:14,639 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 15:46:43] 2026-03-15 14:46:14,641 | INFO     | [data] copytool_out thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:15,645 | INFO     | [job] queue monitor thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:16,894 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:22,182 | INFO     | job.realtimelogging is not enabled
[2026-03-15 15:46:43] 2026-03-15 14:46:23,188 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 15:46:43] 2026-03-15 14:46:37,118 | INFO     | [monitor] cgroup control has ended
[2026-03-15 15:46:43] 2026-03-15 14:46:37,437 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22652752942912)>', '<ExcThread(monitor, started 22652514481920)>']
[2026-03-15 15:46:43] 2026-03-15 14:46:42,462 | INFO     | all workflow threads have been joined
[2026-03-15 15:46:43] 2026-03-15 14:46:42,462 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 15:46:43] 2026-03-15 14:46:42,462 | INFO     | traces error code: 0
[2026-03-15 15:46:43] 2026-03-15 14:46:42,462 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 15:46:43] 2026-03-15 14:46:43,161 | INFO     | PID=82597 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-15 15:46:43] 2026-03-15 14:46:43,161 | INFO     | .. there are 47 such processes running
[2026-03-15 15:46:43] 2026-03-15 14:46:43,161 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 15:46:43] 2026-03-15 14:46:43,162 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 15:46:43] 2026-03-15 14:46:43,162 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 15:46:43] 2026-03-15 14:46:43,162 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 15:46:43] 2026-03-15 14:46:43,162 | INFO     | [monitor] control thread has ended
[2026-03-15 15:46:43] 2026-03-15 14:46:43,389 [wrapper] ==== pilot stdout END ====
[2026-03-15 15:46:43] 2026-03-15 14:46:43,392 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 15:46:43] 2026-03-15 14:46:43,394 [wrapper] pilotpid: 82597
[2026-03-15 15:46:43] 2026-03-15 14:46:43,397 [wrapper] Pilot exit status: 0
[2026-03-15 15:46:43] 2026-03-15 14:46:43,406 [wrapper] pandaids: 7046911072
[2026-03-15 15:46:43] 2026-03-15 14:46:43,535 [wrapper] cleanup supervisor_pilot  828174 82598
[2026-03-15 15:46:43] 2026-03-15 14:46:43,538 [wrapper] Test setup, not cleaning
[2026-03-15 15:46:43] 2026-03-15 14:46:43,540 [wrapper] apfmon messages muted
[2026-03-15 15:46:43] 2026-03-15 14:46:43,542 [wrapper] ==== wrapper stdout END ====
[2026-03-15 15:46:43] 2026-03-15 14:46:43,544 [wrapper] ==== wrapper stderr END ====
[2026-03-15 15:46:43]  *** Error codes and diagnostics ***
[2026-03-15 15:46:43]     "exeErrorCode": 0,
[2026-03-15 15:46:43]     "exeErrorDiag": "",
[2026-03-15 15:46:43]     "pilotErrorCode": 0,
[2026-03-15 15:46:43]     "pilotErrorDiag": "",
[2026-03-15 15:46:43]  *** Listing of results directory ***
[2026-03-15 15:46:43] total 617372
[2026-03-15 15:46:43] -rw-r--r--. 1 boinc boinc    585013 Mar 14 14:10 pilot3.tar.gz
[2026-03-15 15:46:43] -rwx------. 1 boinc boinc     36322 Mar 14 14:13 runpilot2-wrapper.sh
[2026-03-15 15:46:43] -rw-r--r--. 1 boinc boinc      5111 Mar 14 14:17 queuedata.json
[2026-03-15 15:46:43] -rw-r--r--. 1 boinc boinc       100 Mar 15 14:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 15:46:43] -rwxr-xr-x. 1 boinc boinc      7986 Mar 15 14:28 run_atlas
[2026-03-15 15:46:43] -rw-r--r--. 1 boinc boinc       105 Mar 15 14:28 job.xml
[2026-03-15 15:46:43] -rw-r--r--. 1 boinc boinc      6710 Mar 15 14:28 init_data.xml
[2026-03-15 15:46:43] -rw-r--r--. 2 boinc boinc 441304239 Mar 15 14:28 EVNT.46701403._001884.pool.root.1
[2026-03-15 15:46:43] -rw-r--r--. 2 boinc boinc     15845 Mar 15 14:28 start_atlas.sh
[2026-03-15 15:46:43] drwxrwx--x. 2 boinc boinc      4096 Mar 15 14:28 shared
[2026-03-15 15:46:43] -rw-r--r--. 2 boinc boinc    597529 Mar 15 14:28 input.tar.gz
[2026-03-15 15:46:43] -rw-r--r--. 1 boinc boinc         0 Mar 15 14:28 boinc_lockfile
[2026-03-15 15:46:43] -rw-r--r--. 1 boinc boinc      2565 Mar 15 14:28 pandaJob.out
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc   1006481 Mar 15 14:28 agis_schedconf.cvmfs.json
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc   1511579 Mar 15 14:28 agis_ddmendpoints.agis.ALL.json
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc       445 Mar 15 14:28 workernode_map.json
[2026-03-15 15:46:43] drwx------. 5 boinc boinc      4096 Mar 15 14:28 pilot3
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc 184980418 Mar 15 15:45 HITS.48955010._043218.pool.root.1
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc        95 Mar 15 15:45 pilot_heartbeat.json
[2026-03-15 15:46:43] -rw-r--r--. 1 boinc boinc       530 Mar 15 15:45 boinc_task_state.xml
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc      1026 Mar 15 15:45 memory_monitor_summary.json
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc    299405 Mar 15 15:46 log.48955010._043218.job.log.tgz.1
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc      6355 Mar 15 15:46 heartbeat.json
[2026-03-15 15:46:43] -rw-r--r--. 1 boinc boinc      8192 Mar 15 15:46 boinc_mmap_file
[2026-03-15 15:46:43] -rw-r--r--. 1 boinc boinc        27 Mar 15 15:46 wrapper_checkpoint.txt
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc       821 Mar 15 15:46 pilotlog.txt
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc    683106 Mar 15 15:46 log.48955010._043218.job.log.1
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc       357 Mar 15 15:46 output.list
[2026-03-15 15:46:43] -rw-r--r--. 1 boinc boinc       620 Mar 15 15:46 runtime_log
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc   1003520 Mar 15 15:46 result.tar.gz
[2026-03-15 15:46:43] -rw-r--r--. 1 boinc boinc      9221 Mar 15 15:46 runtime_log.err
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc       662 Mar 15 15:46 4ZQLDmrydL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmRSqLDmIdto5n.diag
[2026-03-15 15:46:43] -rw-r--r--. 1 boinc boinc     21809 Mar 15 15:46 stderr.txt
[2026-03-15 15:46:43] HITS file was successfully produced:
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc 184980418 Mar 15 15:45 shared/HITS.pool.root.1
[2026-03-15 15:46:43]  *** Contents of shared directory: ***
[2026-03-15 15:46:43] total 613200
[2026-03-15 15:46:43] -rw-r--r--. 2 boinc boinc 441304239 Mar 15 14:28 ATLAS.root_0
[2026-03-15 15:46:43] -rw-r--r--. 2 boinc boinc     15845 Mar 15 14:28 start_atlas.sh
[2026-03-15 15:46:43] -rw-r--r--. 2 boinc boinc    597529 Mar 15 14:28 input.tar.gz
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc 184980418 Mar 15 15:45 HITS.pool.root.1
[2026-03-15 15:46:43] -rw-------. 1 boinc boinc   1003520 Mar 15 15:46 result.tar.gz
15:46:45 (77965): run_atlas exited; CPU time 17994.623683
15:46:45 (77965): called boinc_finish(0)

</stderr_txt>
]]>

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