Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:28:19 (383236): wrapper (7.7.26015): starting
04:28:19 (383236): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 04:28:19] Arguments: --nthreads 4
[2026-03-15 04:28:19] Threads: 4
[2026-03-15 04:28:19] Checking for CVMFS
[2026-03-15 04:28:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 04:28:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 04:28:20] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 04:28:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 04:28:20] 2.9.2.0 79673 25155 106808 157300 2 49 30902462 36864000 0 130560 0 11822756 99.985 952249 10634 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 04:28:20] CVMFS is ok
[2026-03-15 04:28:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 04:28:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 04:28:20] Further information can be found at the LHC@home message board.
[2026-03-15 04:28:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 04:28:20] Checking for apptainer binary...
[2026-03-15 04:28:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 04:28:20] Running /usr/bin/apptainer --version
[2026-03-15 04:28:20] apptainer version 1.4.1-1.1
[2026-03-15 04:28:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 04:28:20] thA309
[2026-03-15 04:28:20] apptainer works
[2026-03-15 04:28:20] Set ATHENA_PROC_NUMBER=4
[2026-03-15 04:28:20] Set ATHENA_CORE_NUMBER=4
[2026-03-15 04:28:20] Starting ATLAS job with PandaID=7046914872
[2026-03-15 04:28:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 05:42:06]  *** The last 200 lines of the pilot log: ***
[2026-03-15 05:42:06] 2026-03-15 04:41:34,890 | INFO     | collected zombie processes
[2026-03-15 05:42:06] 2026-03-15 04:41:34,890 | INFO     | will attempt to kill all subprocesses of pid=391860
[2026-03-15 05:42:06] 2026-03-15 04:41:34,938 | INFO     | process IDs to be killed: [391860] (in reverse order)
[2026-03-15 05:42:06] 2026-03-15 04:41:34,975 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 05:42:06] 2026-03-15 04:41:34,975 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 05:42:06] 2026-03-15 04:41:34,977 | INFO     | did not find any defunct processes belonging to 391860
[2026-03-15 05:42:06] 2026-03-15 04:41:34,979 | INFO     | did not find any defunct processes belonging to 391860
[2026-03-15 05:42:06] 2026-03-15 04:41:34,979 | INFO     | ready for new job
[2026-03-15 05:42:06] 2026-03-15 04:41:34,979 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 05:42:06] 2026-03-15 04:41:34,980 | INFO     | **************************************
[2026-03-15 05:42:06] 2026-03-15 04:41:34,980 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 05:42:06] 2026-03-15 04:41:34,980 | INFO     | **************************************
[2026-03-15 05:42:06] 2026-03-15 04:41:34,980 | INFO     | 
[2026-03-15 05:42:06] 2026-03-15 04:41:34,980 | INFO     | architecture information:
[2026-03-15 05:42:06] 2026-03-15 04:41:34,980 | INFO     | executing command: cat /etc/os-release
[2026-03-15 05:42:06] 2026-03-15 04:41:34,996 | INFO     | cat /etc/os-release:
[2026-03-15 05:42:06] NAME="CentOS Linux"
[2026-03-15 05:42:06] VERSION="7 (Core)"
[2026-03-15 05:42:06] ID="centos"
[2026-03-15 05:42:06] ID_LIKE="rhel fedora"
[2026-03-15 05:42:06] VERSION_ID="7"
[2026-03-15 05:42:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 05:42:06] ANSI_COLOR="0;31"
[2026-03-15 05:42:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 05:42:06] HOME_URL="https://www.centos.org/"
[2026-03-15 05:42:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 05:42:06] 
[2026-03-15 05:42:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 05:42:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 05:42:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 05:42:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 05:42:06] 
[2026-03-15 05:42:06] 2026-03-15 04:41:34,996 | INFO     | **************************************
[2026-03-15 05:42:06] 2026-03-15 04:41:35,499 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 05:42:06] 2026-03-15 04:41:35,518 | INFO     | sufficient remaining disk space (227243196416 B)
[2026-03-15 05:42:06] 2026-03-15 04:41:35,518 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 05:42:06] 2026-03-15 04:41:35,518 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 05:42:06] 2026-03-15 04:41:35,518 | INFO     | update_server=False
[2026-03-15 05:42:06] 2026-03-15 04:41:35,519 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 05:42:06] 2026-03-15 04:41:35,519 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 05:42:06] 2026-03-15 04:41:35,519 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 05:42:06] 2026-03-15 04:41:35,864 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-15 05:42:06] 2026-03-15 04:41:35,865 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-15 05:42:06] 2026-03-15 04:41:35,865 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 05:42:06] 2026-03-15 04:41:35,865 | INFO     | will abort loop
[2026-03-15 05:42:06] 2026-03-15 04:41:35,958 | INFO     | all job control threads have been joined
[2026-03-15 05:42:06] 2026-03-15 04:41:36,160 | INFO     | all payload control threads have been joined
[2026-03-15 05:42:06] 2026-03-15 04:41:36,524 | INFO     | [job] retrieve thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:36,525 | INFO     | [job] queue monitor thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:36,560 | INFO     | all data control threads have been joined
[2026-03-15 05:42:06] 2026-03-15 04:41:36,595 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:36,654 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:36,660 | INFO     | [payload] validate_post thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:36,708 | INFO     | [data] copytool_in thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:36,870 | INFO     | [job] job monitor thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:36,964 | INFO     | [job] control thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:37,163 | INFO     | [payload] control thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:37,239 | INFO     | [payload] failed_post thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:37,525 | INFO     | [data] copytool_out thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:37,566 | INFO     | [data] control thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:37,828 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:37,878 | INFO     | [job] validate thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:37,995 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:38,378 | INFO     | [monitor] cgroup control has ended
[2026-03-15 05:42:06] 2026-03-15 04:41:38,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 05:42:06] 2026-03-15 04:41:42,459 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 05:42:06] 2026-03-15 04:41:42,594 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140399687354176)>', '<ExcThread(monitor, started 140398320154368)>']
[2026-03-15 05:42:06] 2026-03-15 04:41:47,612 | INFO     | all workflow threads have been joined
[2026-03-15 05:42:06] 2026-03-15 04:41:47,612 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 05:42:06] 2026-03-15 04:41:47,614 | INFO     | traces error code: 0
[2026-03-15 05:42:06] 2026-03-15 04:41:47,614 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 05:42:06] 2026-03-15 04:42:05,973 | INFO     | PID=387351 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 05:42:06] 2026-03-15 04:42:05,974 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 05:42:06] 2026-03-15 04:42:05,974 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 05:42:06] 2026-03-15 04:42:05,974 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 05:42:06] 2026-03-15 04:42:05,974 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 05:42:06] 2026-03-15 04:42:05,974 | INFO     | [monitor] control thread has ended
[2026-03-15 05:42:06] 2026-03-15 04:42:06,051 [wrapper] ==== pilot stdout END ====
[2026-03-15 05:42:06] 2026-03-15 04:42:06,056 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 05:42:06] 2026-03-15 04:42:06,061 [wrapper] pilotpid: 387351
[2026-03-15 05:42:06] 2026-03-15 04:42:06,065 [wrapper] Pilot exit status: 0
[2026-03-15 05:42:06] 2026-03-15 04:42:06,078 [wrapper] pandaids: 7046914872
[2026-03-15 05:42:06] 2026-03-15 04:42:06,102 [wrapper] cleanup supervisor_pilot  397692 387352
[2026-03-15 05:42:06] 2026-03-15 04:42:06,106 [wrapper] Test setup, not cleaning
[2026-03-15 05:42:06] 2026-03-15 04:42:06,110 [wrapper] apfmon messages muted
[2026-03-15 05:42:06] 2026-03-15 04:42:06,114 [wrapper] ==== wrapper stdout END ====
[2026-03-15 05:42:06] 2026-03-15 04:42:06,118 [wrapper] ==== wrapper stderr END ====
[2026-03-15 05:42:06]  *** Error codes and diagnostics ***
[2026-03-15 05:42:06]     "exeErrorCode": 0,
[2026-03-15 05:42:06]     "exeErrorDiag": "",
[2026-03-15 05:42:06]     "pilotErrorCode": 0,
[2026-03-15 05:42:06]     "pilotErrorDiag": "",
[2026-03-15 05:42:06]  *** Listing of results directory ***
[2026-03-15 05:42:06] total 620240
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc    585013 Mar 14 14:10 pilot3.tar.gz
[2026-03-15 05:42:06] -rwx------ 1 boinc boinc     36322 Mar 14 14:11 runpilot2-wrapper.sh
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc      5111 Mar 14 14:14 queuedata.json
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc       100 Mar 15 04:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 05:42:06] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 04:28 run_atlas
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc       105 Mar 15 04:28 job.xml
[2026-03-15 05:42:06] -rw-r--r-- 2 boinc boinc 435607120 Mar 15 04:28 EVNT.46701403._001906.pool.root.1
[2026-03-15 05:42:06] -rw-r--r-- 2 boinc boinc    597533 Mar 15 04:28 input.tar.gz
[2026-03-15 05:42:06] -rw-r--r-- 2 boinc boinc     15845 Mar 15 04:28 start_atlas.sh
[2026-03-15 05:42:06] drwxrwx--x 2 boinc boinc      4096 Mar 15 04:28 shared
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc         0 Mar 15 04:28 boinc_setup_complete
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc      6376 Mar 15 04:28 init_data.xml
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc         0 Mar 15 04:28 boinc_lockfile
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc      2564 Mar 15 04:28 pandaJob.out
[2026-03-15 05:42:06] -rw------- 1 boinc boinc   1006481 Mar 15 04:28 agis_schedconf.cvmfs.json
[2026-03-15 05:42:06] -rw------- 1 boinc boinc   1511579 Mar 15 04:28 agis_ddmendpoints.agis.ALL.json
[2026-03-15 05:42:06] -rw------- 1 boinc boinc       420 Mar 15 04:28 workernode_map.json
[2026-03-15 05:42:06] drwx------ 5 boinc boinc      4096 Mar 15 04:28 pilot3
[2026-03-15 05:42:06] -rw------- 1 boinc boinc 193704517 Mar 15 05:41 HITS.48955010._044269.pool.root.1
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc       530 Mar 15 05:41 boinc_task_state.xml
[2026-03-15 05:42:06] -rw------- 1 boinc boinc      1016 Mar 15 05:41 memory_monitor_summary.json
[2026-03-15 05:42:06] -rw------- 1 boinc boinc    295112 Mar 15 05:41 log.48955010._044269.job.log.tgz.1
[2026-03-15 05:42:06] -rw------- 1 boinc boinc      6309 Mar 15 05:41 heartbeat.json
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc      8192 Mar 15 05:41 boinc_mmap_file
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc        27 Mar 15 05:41 wrapper_checkpoint.txt
[2026-03-15 05:42:06] -rw------- 1 boinc boinc       746 Mar 15 05:42 pilotlog.txt
[2026-03-15 05:42:06] -rw------- 1 boinc boinc        95 Mar 15 05:42 pilot_heartbeat.json
[2026-03-15 05:42:06] -rw------- 1 boinc boinc    647284 Mar 15 05:42 log.48955010._044269.job.log.1
[2026-03-15 05:42:06] -rw------- 1 boinc boinc       357 Mar 15 05:42 output.list
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc       620 Mar 15 05:42 runtime_log
[2026-03-15 05:42:06] -rw------- 1 boinc boinc    962560 Mar 15 05:42 result.tar.gz
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc      8896 Mar 15 05:42 runtime_log.err
[2026-03-15 05:42:06] -rw------- 1 boinc boinc       657 Mar 15 05:42 49nMDmvwdL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmNOqLDmlzhMyn.diag
[2026-03-15 05:42:06] -rw-r--r-- 1 boinc boinc     10502 Mar 15 05:42 stderr.txt
[2026-03-15 05:42:06] HITS file was successfully produced:
[2026-03-15 05:42:06] -rw------- 1 boinc boinc 193704517 Mar 15 05:41 shared/HITS.pool.root.1
[2026-03-15 05:42:06]  *** Contents of shared directory: ***
[2026-03-15 05:42:06] total 616116
[2026-03-15 05:42:06] -rw-r--r-- 2 boinc boinc 435607120 Mar 15 04:28 ATLAS.root_0
[2026-03-15 05:42:06] -rw-r--r-- 2 boinc boinc    597533 Mar 15 04:28 input.tar.gz
[2026-03-15 05:42:06] -rw-r--r-- 2 boinc boinc     15845 Mar 15 04:28 start_atlas.sh
[2026-03-15 05:42:06] -rw------- 1 boinc boinc 193704517 Mar 15 05:41 HITS.pool.root.1
[2026-03-15 05:42:06] -rw------- 1 boinc boinc    962560 Mar 15 05:42 result.tar.gz
05:42:07 (383236): run_atlas exited; CPU time 16026.849021
05:42:07 (383236): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN