Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
04:40:40 (2202419): wrapper (7.7.26015): starting
04:40:40 (2202419): wrapper: running run_atlas (--nthreads 4)
[2026-03-16 04:40:40] Arguments: --nthreads 4
[2026-03-16 04:40:40] Threads: 4
[2026-03-16 04:40:40] Checking for CVMFS
[2026-03-16 04:40:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-16 04:40:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-16 04:40:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-16 04:40:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-16 04:40:40] 2.13.3.0 11582 40556 45164 157336 3 50 18590548 33554433 0 130560 0 20957229 99.987 1479709 301 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-03-16 04:40:40] CVMFS is ok
[2026-03-16 04:40:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 04:40:40] Checking for apptainer binary...
[2026-03-16 04:40:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-16 04:40:40] Running /usr/bin/apptainer --version
[2026-03-16 04:40:40] apptainer version 1.4.5
[2026-03-16 04:40:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 04:40:40] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-03-16 04:40:40] apptainer works
[2026-03-16 04:40:40] Set ATHENA_PROC_NUMBER=4
[2026-03-16 04:40:40] Set ATHENA_CORE_NUMBER=4
[2026-03-16 04:40:40] Starting ATLAS job with PandaID=7046915957
[2026-03-16 04:40:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-16 05:32:01]  *** The last 200 lines of the pilot log: ***
[2026-03-16 05:32:01]  guid=e4baca9e-4ed6-4ec4-80fa-19116e687630
[2026-03-16 05:32:01]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-16 05:32:01]  is_altstaged=None
[2026-03-16 05:32:01]  is_tar=False
[2026-03-16 05:32:01]  lfn=log.48955010._044445.job.log.tgz.1
[2026-03-16 05:32:01]  mtime=0
[2026-03-16 05:32:01]  protocol_id=None
[2026-03-16 05:32:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-16 05:32:01]  replicas=None
[2026-03-16 05:32:01]  scope=mc23_13p6TeV
[2026-03-16 05:32:01]  status=None
[2026-03-16 05:32:01]  status_code=0
[2026-03-16 05:32:01]  storage_token=
[2026-03-16 05:32:01]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-7046915957/log.48955010._044445.job.log.tgz.1
[2026-03-16 05:32:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/95/log.48955010._044445.job.log.tgz.1
[2026-03-16 05:32:01]  workdir=None
[2026-03-16 05:32:01] ]
[2026-03-16 05:32:01] 2026-03-16 03:31:26,487 | INFO     | transferring file log.48955010._044445.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-7046915957/log.48955010._044445.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-03-16 05:32:01] 2026-03-16 03:31:26,487 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-7046915957/log.48955010._044445.job.log.tgz.1 /home/ek/BOINC/slots/0/log.48955010._044445.job
[2026-03-16 05:32:01] 2026-03-16 03:31:26,495 | INFO     | adding to output.list: log.48955010._044445.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/95/log.48955010._044445.job.log.tg
[2026-03-16 05:32:01] 2026-03-16 03:31:26,495 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-16 05:32:01] 2026-03-16 03:31:26,495 | INFO     | summary of transferred files:
[2026-03-16 05:32:01] 2026-03-16 03:31:26,495 | INFO     |  -- lfn=log.48955010._044445.job.log.tgz.1, status_code=0, status=transferred
[2026-03-16 05:32:01] 2026-03-16 03:31:26,495 | INFO     | stage-out finished correctly
[2026-03-16 05:32:01] 2026-03-16 03:31:26,715 | INFO     | time since job start (3039s) is within the limit (345600.0s)
[2026-03-16 05:32:01] 2026-03-16 03:31:28,474 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-16 05:32:01] 2026-03-16 03:31:28,717 | INFO     | time since job start (3041s) is within the limit (345600.0s)
[2026-03-16 05:32:01] 2026-03-16 03:31:28,977 | INFO     | job 7046915957 has state=finished
[2026-03-16 05:32:01] 2026-03-16 03:31:28,977 | INFO     | preparing for final server update for job 7046915957 in state='finished'
[2026-03-16 05:32:01] 2026-03-16 03:31:28,977 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-7046915957/jobReport.json
[2026-03-16 05:32:01] 2026-03-16 03:31:28,978 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-03-16 05:32:01] 2026-03-16 03:31:28,978 | INFO     | this job has now completed (state=finished)
[2026-03-16 05:32:01] 2026-03-16 03:31:28,978 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-16 05:32:01] 2026-03-16 03:31:28,978 | INFO     | log transfer has been attempted: DONE
[2026-03-16 05:32:01] 2026-03-16 03:31:28,978 | INFO     | job 7046915957 has finished - writing final server update
[2026-03-16 05:32:01] 2026-03-16 03:31:28,979 | INFO     | total number of processed events: 400 (read)
[2026-03-16 05:32:01] 2026-03-16 03:31:28,980 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7046915957/memory_monitor_summary.json (trf name=prmon)
[2026-03-16 05:32:01] 2026-03-16 03:31:28,981 | INFO     | extracted standard info from prmon json
[2026-03-16 05:32:01] 2026-03-16 03:31:28,981 | INFO     | extracted standard memory fields from prmon json
[2026-03-16 05:32:01] 2026-03-16 03:31:28,981 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-16 05:32:01] 2026-03-16 03:31:28,981 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-16 05:32:01] 2026-03-16 03:31:28,981 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-16 05:32:01] 2026-03-16 03:31:28,981 | INFO     | fitting pss+swap vs Time
[2026-03-16 05:32:01] 2026-03-16 03:31:28,981 | INFO     | sum of square deviations: 24640462.0
[2026-03-16 05:32:01] 2026-03-16 03:31:28,981 | INFO     | sum of deviations: -5934509196.0
[2026-03-16 05:32:01] 2026-03-16 03:31:28,981 | INFO     | mean x: 1773630449.0
[2026-03-16 05:32:01] 2026-03-16 03:31:28,981 | INFO     | mean y: 2573036.6511627906
[2026-03-16 05:32:01] 2026-03-16 03:31:28,981 | INFO     | intersect: 427170952018.18604
[2026-03-16 05:32:01] 2026-03-16 03:31:28,981 | INFO     | chi2: 0.07582287757035114
[2026-03-16 05:32:01] 2026-03-16 03:31:28,981 | INFO     | current memory leak: -240.84 B/s (using 43 data points, chi2=0.08)
[2026-03-16 05:32:01] 2026-03-16 03:31:28,982 | INFO     | could have reported an average CPU frequency of 3104 MHz (5 samples)
[2026-03-16 05:32:01] 2026-03-16 03:31:28,982 | INFO     | ..............................
[2026-03-16 05:32:01] 2026-03-16 03:31:28,982 | INFO     | . Timing measurements:
[2026-03-16 05:32:01] 2026-03-16 03:31:28,982 | INFO     | . get job = 0 s
[2026-03-16 05:32:01] 2026-03-16 03:31:28,982 | INFO     | . initial setup = 3 s
[2026-03-16 05:32:01] 2026-03-16 03:31:28,982 | INFO     | . payload setup = 2 s
[2026-03-16 05:32:01] 2026-03-16 03:31:28,982 | INFO     | . stage-in = 0 s
[2026-03-16 05:32:01] 2026-03-16 03:31:28,982 | INFO     | . payload execution = 3021 s
[2026-03-16 05:32:01] 2026-03-16 03:31:28,982 | INFO     | . stage-out = 0 s
[2026-03-16 05:32:01] 2026-03-16 03:31:28,982 | INFO     | . log creation = 0 s
[2026-03-16 05:32:01] 2026-03-16 03:31:28,982 | INFO     | ..............................
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | 
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | job summary report
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | --------------------------------------------------
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | PanDA job id: 7046915957
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | task id: 48955010
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | errors: (none)
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | pilot state: finished 
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | transexitcode: 0
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | exeerrorcode: 0
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | exeerrordiag: 
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | exitcode: 0
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | exitmsg: OK
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | cpuconsumptiontime: 11520 s
[2026-03-16 05:32:01] 2026-03-16 03:31:29,460 | INFO     | nevents: 400
[2026-03-16 05:32:01] 2026-03-16 03:31:29,461 | INFO     | neventsw: 0
[2026-03-16 05:32:01] 2026-03-16 03:31:29,461 | INFO     | pid: 2211074
[2026-03-16 05:32:01] 2026-03-16 03:31:29,461 | INFO     | pgrp: 2211074
[2026-03-16 05:32:01] 2026-03-16 03:31:29,461 | INFO     | corecount: 4
[2026-03-16 05:32:01] 2026-03-16 03:31:29,461 | INFO     | event service: False
[2026-03-16 05:32:01] 2026-03-16 03:31:29,461 | INFO     | sizes: {0: 2280179, 11: 2280179, 3027: 2305715, 3028: 2314713, 3030: 2314769, 3031: 2314995}
[2026-03-16 05:32:01] 2026-03-16 03:31:29,461 | INFO     | --------------------------------------------------
[2026-03-16 05:32:01] 2026-03-16 03:31:29,461 | INFO     | 
[2026-03-16 05:32:01] 2026-03-16 03:31:29,461 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,470 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-16 05:32:01] 2026-03-16 03:31:29,471 | INFO     | job 7046915957 has completed (purged errors)
[2026-03-16 05:32:01] 2026-03-16 03:31:29,471 | INFO     | overall cleanup function is called
[2026-03-16 05:32:01] 2026-03-16 03:31:30,251 | WARNING  | process 2211074 can no longer be monitored (due to stat problems) - aborting
[2026-03-16 05:32:01] 2026-03-16 03:31:30,307 | INFO     | using path: /home/ek/BOINC/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-16 05:32:01] 2026-03-16 03:31:30,394 | INFO     | number of running child processes to parent process 2211074: 1
[2026-03-16 05:32:01] 2026-03-16 03:31:30,394 | INFO     | maximum number of monitored processes: 6
[2026-03-16 05:32:01] 2026-03-16 03:31:30,394 | INFO     | aborting job monitoring since job object (job id=7046915957) has expired
[2026-03-16 05:32:01] 2026-03-16 03:31:30,477 | INFO     | --- collectZombieJob: --- 10, [2211074]
[2026-03-16 05:32:01] 2026-03-16 03:31:30,477 | INFO     | zombie collector waiting for pid 2211074
[2026-03-16 05:32:01] 2026-03-16 03:31:30,478 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-16 05:32:01] 2026-03-16 03:31:30,478 | INFO     | collected zombie processes
[2026-03-16 05:32:01] 2026-03-16 03:31:30,478 | INFO     | will attempt to kill all subprocesses of pid=2211074
[2026-03-16 05:32:01] 2026-03-16 03:31:30,567 | INFO     | process IDs to be killed: [2211074] (in reverse order)
[2026-03-16 05:32:01] 2026-03-16 03:31:30,596 | WARNING  | found no corresponding commands to process id(s)
[2026-03-16 05:32:01] 2026-03-16 03:31:30,596 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-16 05:32:01] 2026-03-16 03:31:30,599 | INFO     | did not find any defunct processes belonging to 2211074
[2026-03-16 05:32:01] 2026-03-16 03:31:30,601 | INFO     | did not find any defunct processes belonging to 2211074
[2026-03-16 05:32:01] 2026-03-16 03:31:30,601 | INFO     | ready for new job
[2026-03-16 05:32:01] 2026-03-16 03:31:30,601 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-16 05:32:01] 2026-03-16 03:31:30,602 | INFO     | **************************************
[2026-03-16 05:32:01] 2026-03-16 03:31:30,602 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-16 05:32:01] 2026-03-16 03:31:30,602 | INFO     | **************************************
[2026-03-16 05:32:01] 2026-03-16 03:31:30,602 | INFO     | 
[2026-03-16 05:32:01] 2026-03-16 03:31:30,602 | INFO     | architecture information:
[2026-03-16 05:32:01] 2026-03-16 03:31:30,603 | INFO     | executing command: cat /etc/os-release
[2026-03-16 05:32:01] 2026-03-16 03:31:30,608 | INFO     | cat /etc/os-release:
[2026-03-16 05:32:01] NAME="CentOS Linux"
[2026-03-16 05:32:01] VERSION="7 (Core)"
[2026-03-16 05:32:01] ID="centos"
[2026-03-16 05:32:01] ID_LIKE="rhel fedora"
[2026-03-16 05:32:01] VERSION_ID="7"
[2026-03-16 05:32:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-16 05:32:01] ANSI_COLOR="0;31"
[2026-03-16 05:32:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-16 05:32:01] HOME_URL="https://www.centos.org/"
[2026-03-16 05:32:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-16 05:32:01] 
[2026-03-16 05:32:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-16 05:32:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-16 05:32:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-16 05:32:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-16 05:32:01] 
[2026-03-16 05:32:01] 2026-03-16 03:31:30,609 | INFO     | **************************************
[2026-03-16 05:32:01] 2026-03-16 03:31:31,111 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-03-16 05:32:01] 2026-03-16 03:31:31,118 | INFO     | sufficient remaining disk space (66300411904 B)
[2026-03-16 05:32:01] 2026-03-16 03:31:31,118 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-16 05:32:01] 2026-03-16 03:31:31,119 | INFO     | current server update state: UPDATING_FINAL
[2026-03-16 05:32:01] 2026-03-16 03:31:31,119 | INFO     | update_server=False
[2026-03-16 05:32:01] 2026-03-16 03:31:31,119 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-16 05:32:01] 2026-03-16 03:31:31,119 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-16 05:32:01] 2026-03-16 03:31:31,119 | INFO     | will abort loop
[2026-03-16 05:32:01] 2026-03-16 03:31:31,510 | INFO     | all data control threads have been joined
[2026-03-16 05:32:01] 2026-03-16 03:31:31,517 | INFO     | all payload control threads have been joined
[2026-03-16 05:32:01] 2026-03-16 03:31:32,030 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-16 05:32:01] 2026-03-16 03:31:32,053 | INFO     | all job control threads have been joined
[2026-03-16 05:32:01] 2026-03-16 03:31:32,123 | INFO     | [job] retrieve thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:32,124 | INFO     | [job] job monitor thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:32,142 | INFO     | [data] copytool_in thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:32,150 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:32,296 | INFO     | [payload] validate_post thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:32,514 | INFO     | [data] control thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:32,522 | INFO     | [payload] control thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:33,058 | INFO     | [job] control thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:33,233 | INFO     | [payload] failed_post thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:33,360 | INFO     | [payload] execute_payloads thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:33,470 | INFO     | [job] validate thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:33,532 | INFO     | [job] create_data_payload thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:33,538 | INFO     | [payload] validate_pre thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:34,019 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-16 05:32:01] 2026-03-16 03:31:34,035 | INFO     | [data] copytool_out thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:34,506 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-16 05:32:01] 2026-03-16 03:31:35,024 | INFO     | [job] queue monitor thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:38,509 | INFO     | [data] queue_monitor thread has finished
[2026-03-16 05:32:01] 2026-03-16 03:31:49,711 | INFO     | [monitor] cgroup control has ended
[2026-03-16 05:32:01] 2026-03-16 03:31:50,098 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139808161765184)>', '<ExcThread(monitor, started 139807678256896)>']
[2026-03-16 05:32:01] 2026-03-16 03:31:55,123 | INFO     | all workflow threads have been joined
[2026-03-16 05:32:01] 2026-03-16 03:31:55,123 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-16 05:32:01] 2026-03-16 03:31:55,123 | INFO     | traces error code: 0
[2026-03-16 05:32:01] 2026-03-16 03:31:55,124 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-16 05:32:01] 2026-03-16 03:32:01,882 | INFO     | PID=2206239 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-16 05:32:01] 2026-03-16 03:32:01,882 | INFO     | found 0 job(s) in 20 queues
[2026-03-16 05:32:01] 2026-03-16 03:32:01,882 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-16 05:32:01] 2026-03-16 03:32:01,882 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-16 05:32:01] 2026-03-16 03:32:01,882 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-16 05:32:01] 2026-03-16 03:32:01,882 | INFO     | [monitor] control thread has ended
[2026-03-16 05:32:01] 2026-03-16 03:32:01,923 [wrapper] ==== pilot stdout END ====
[2026-03-16 05:32:01] 2026-03-16 03:32:01,925 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-16 05:32:01] 2026-03-16 03:32:01,926 [wrapper] pilotpid: 2206239
[2026-03-16 05:32:01] 2026-03-16 03:32:01,928 [wrapper] Pilot exit status: 0
[2026-03-16 05:32:01] 2026-03-16 03:32:01,933 [wrapper] pandaids: 7046915957
[2026-03-16 05:32:01] 2026-03-16 03:32:01,953 [wrapper] cleanup supervisor_pilot 2245831 2206240
[2026-03-16 05:32:01] 2026-03-16 03:32:01,955 [wrapper] Test setup, not cleaning
[2026-03-16 05:32:01] 2026-03-16 03:32:01,956 [wrapper] apfmon messages muted
[2026-03-16 05:32:01] 2026-03-16 03:32:01,957 [wrapper] ==== wrapper stdout END ====
[2026-03-16 05:32:01] 2026-03-16 03:32:01,958 [wrapper] ==== wrapper stderr END ====
[2026-03-16 05:32:01]  *** Error codes and diagnostics ***
[2026-03-16 05:32:01]     "exeErrorCode": 0,
[2026-03-16 05:32:01]     "exeErrorDiag": "",
[2026-03-16 05:32:01]     "pilotErrorCode": 0,
[2026-03-16 05:32:01]     "pilotErrorDiag": "",
[2026-03-16 05:32:01]  *** Listing of results directory ***
[2026-03-16 05:32:01] total 605700
[2026-03-16 05:32:01] -rw-r--r-- 1 ek ek    585013 Mar 14 15:10 pilot3.tar.gz
[2026-03-16 05:32:01] -rwx------ 1 ek ek     36322 Mar 14 15:11 runpilot2-wrapper.sh
[2026-03-16 05:32:01] -rw-r--r-- 1 ek ek      5111 Mar 14 15:14 queuedata.json
[2026-03-16 05:32:01] -rw-rw-r-- 1 ek ek       100 Mar 16 04:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-16 05:32:01] -rwxr-xr-x 1 ek ek      7986 Mar 16 04:40 run_atlas
[2026-03-16 05:32:01] -rw-rw-r-- 1 ek ek       105 Mar 16 04:40 job.xml
[2026-03-16 05:32:01] -rw-r--r-- 2 ek ek 438328572 Mar 16 04:40 EVNT.46701403._001910.pool.root.1
[2026-03-16 05:32:01] -rw-r--r-- 2 ek ek    597526 Mar 16 04:40 input.tar.gz
[2026-03-16 05:32:01] -rw-r--r-- 2 ek ek     15845 Mar 16 04:40 start_atlas.sh
[2026-03-16 05:32:01] drwxrwx--x 2 ek ek      4096 Mar 16 04:40 shared
[2026-03-16 05:32:01] -rw-rw-r-- 1 ek ek         0 Mar 16 04:40 boinc_setup_complete
[2026-03-16 05:32:01] -rw-rw-r-- 1 ek ek      9840 Mar 16 04:40 init_data.xml
[2026-03-16 05:32:01] -rw-rw-r-- 1 ek ek         0 Mar 16 04:40 boinc_lockfile
[2026-03-16 05:32:01] -rw-rw-r-- 1 ek ek      2563 Mar 16 04:40 pandaJob.out
[2026-03-16 05:32:01] -rw------- 1 ek ek        50 Mar 16 04:40 setup.sh.local
[2026-03-16 05:32:01] -rw------- 1 ek ek   1006471 Mar 16 04:40 agis_schedconf.cvmfs.json
[2026-03-16 05:32:01] -rw------- 1 ek ek   1511579 Mar 16 04:40 agis_ddmendpoints.agis.ALL.json
[2026-03-16 05:32:01] -rw------- 1 ek ek       432 Mar 16 04:40 workernode_map.json
[2026-03-16 05:32:01] drwx------ 5 ek ek      4096 Mar 16 04:40 pilot3
[2026-03-16 05:32:01] -rw------- 1 ek ek        95 Mar 16 05:31 pilot_heartbeat.json
[2026-03-16 05:32:01] -rw------- 1 ek ek 176533381 Mar 16 05:31 HITS.48955010._044445.pool.root.1
[2026-03-16 05:32:01] -rw-rw-r-- 1 ek ek       530 Mar 16 05:31 boinc_task_state.xml
[2026-03-16 05:32:01] -rw------- 1 ek ek      1032 Mar 16 05:31 memory_monitor_summary.json
[2026-03-16 05:32:01] -rw------- 1 ek ek    251800 Mar 16 05:31 log.48955010._044445.job.log.tgz.1
[2026-03-16 05:32:01] -rw------- 1 ek ek      6320 Mar 16 05:31 heartbeat.json
[2026-03-16 05:32:01] -rw-rw-r-- 1 ek ek      8192 Mar 16 05:31 boinc_mmap_file
[2026-03-16 05:32:01] -rw-rw-r-- 1 ek ek        27 Mar 16 05:31 wrapper_checkpoint.txt
[2026-03-16 05:32:01] -rw------- 1 ek ek       747 Mar 16 05:32 pilotlog.txt
[2026-03-16 05:32:01] -rw------- 1 ek ek    465586 Mar 16 05:32 log.48955010._044445.job.log.1
[2026-03-16 05:32:01] -rw------- 1 ek ek       357 Mar 16 05:32 output.list
[2026-03-16 05:32:01] -rw-rw-r-- 1 ek ek       620 Mar 16 05:32 runtime_log
[2026-03-16 05:32:01] -rw------- 1 ek ek    737280 Mar 16 05:32 result.tar.gz
[2026-03-16 05:32:01] -rw------- 1 ek ek       659 Mar 16 05:32 pjKODm0wdL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmb6sLDmVrY3zm.diag
[2026-03-16 05:32:01] -rw-rw-r-- 1 ek ek      9501 Mar 16 05:32 runtime_log.err
[2026-03-16 05:32:01] -rw-rw-r-- 1 ek ek     21244 Mar 16 05:32 stderr.txt
[2026-03-16 05:32:01] HITS file was successfully produced:
[2026-03-16 05:32:01] -rw------- 1 ek ek 176533381 Mar 16 05:31 shared/HITS.pool.root.1
[2026-03-16 05:32:01]  *** Contents of shared directory: ***
[2026-03-16 05:32:01] total 601780
[2026-03-16 05:32:01] -rw-r--r-- 2 ek ek 438328572 Mar 16 04:40 ATLAS.root_0
[2026-03-16 05:32:01] -rw-r--r-- 2 ek ek    597526 Mar 16 04:40 input.tar.gz
[2026-03-16 05:32:01] -rw-r--r-- 2 ek ek     15845 Mar 16 04:40 start_atlas.sh
[2026-03-16 05:32:01] -rw------- 1 ek ek 176533381 Mar 16 05:31 HITS.pool.root.1
[2026-03-16 05:32:01] -rw------- 1 ek ek    737280 Mar 16 05:32 result.tar.gz
05:32:03 (2202419): run_atlas exited; CPU time 11548.152528
05:32:03 (2202419): called boinc_finish(0)

</stderr_txt>
]]>

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