Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:28:39 (593242): wrapper (7.7.26015): starting
15:28:39 (593242): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 15:28:39] Arguments: --nthreads 4
[2026-03-15 15:28:39] Threads: 4
[2026-03-15 15:28:39] Checking for CVMFS
[2026-03-15 15:28:39] No cvmfs_config command found, will try listing directly
[2026-03-15 15:28:39] CVMFS is ok
[2026-03-15 15:28:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 15:28:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 15:28:39] Further information can be found at the LHC@home message board.
[2026-03-15 15:28:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 15:28:39] Checking for apptainer binary...
[2026-03-15 15:28:39] which: no apptainer in ((null))
[2026-03-15 15:28:39] apptainer is not installed, using version from CVMFS
[2026-03-15 15:28:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 15:28:39] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot88/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-15 15:28:39] apptainer works
[2026-03-15 15:28:39] Set ATHENA_PROC_NUMBER=4
[2026-03-15 15:28:39] Set ATHENA_CORE_NUMBER=4
[2026-03-15 15:28:39] Starting ATLAS job with PandaID=7046914163
[2026-03-15 15:28:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot88/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 16:46:20]  *** The last 200 lines of the pilot log: ***
[2026-03-15 16:46:20]  status=None
[2026-03-15 16:46:20]  status_code=0
[2026-03-15 16:46:20]  storage_token=
[2026-03-15 16:46:20]  surl=/var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7046914163/log.48955010._044031.job.log.tgz.1
[2026-03-15 16:46:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/31/log.48955010._044031.job.log.tgz.1
[2026-03-15 16:46:20]  workdir=None
[2026-03-15 16:46:20] ]
[2026-03-15 16:46:20] 2026-03-15 15:45:45,807 | INFO     | transferring file log.48955010._044031.job.log.tgz.1 from /var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7046914163/log.48955010._044031.job.log.tgz.1 to /var/lib/b
[2026-03-15 16:46:20] 2026-03-15 15:45:45,808 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7046914163/log.48955010._044031.job.log.tgz.1 /var/lib/boinc/var/slot88/slots/2/lo
[2026-03-15 16:46:20] 2026-03-15 15:45:45,822 | INFO     | adding to output.list: log.48955010._044031.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/31/log.48955010._044031.job.log.tg
[2026-03-15 16:46:20] 2026-03-15 15:45:45,823 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-15 16:46:20] 2026-03-15 15:45:45,823 | INFO     | summary of transferred files:
[2026-03-15 16:46:20] 2026-03-15 15:45:45,823 | INFO     |  -- lfn=log.48955010._044031.job.log.tgz.1, status_code=0, status=transferred
[2026-03-15 16:46:20] 2026-03-15 15:45:45,823 | INFO     | stage-out finished correctly
[2026-03-15 16:46:20] 2026-03-15 15:45:46,715 | INFO     | time since job start (4615s) is within the limit (345600.0s)
[2026-03-15 16:46:20] 2026-03-15 15:45:47,114 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-15 16:46:20] 2026-03-15 15:45:47,164 | INFO     | job 7046914163 has state=finished
[2026-03-15 16:46:20] 2026-03-15 15:45:47,164 | INFO     | preparing for final server update for job 7046914163 in state='finished'
[2026-03-15 16:46:20] 2026-03-15 15:45:47,164 | INFO     | reading metadata from: /var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7046914163/jobReport.json
[2026-03-15 16:46:20] 2026-03-15 15:45:47,166 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot88/slots/2/workernode_map.json
[2026-03-15 16:46:20] 2026-03-15 15:45:47,166 | INFO     | this job has now completed (state=finished)
[2026-03-15 16:46:20] 2026-03-15 15:45:47,166 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 16:46:20] 2026-03-15 15:45:47,166 | INFO     | log transfer has been attempted: DONE
[2026-03-15 16:46:20] 2026-03-15 15:45:47,166 | INFO     | job 7046914163 has finished - writing final server update
[2026-03-15 16:46:20] 2026-03-15 15:45:47,167 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3875231/.job.ad'
[2026-03-15 16:46:20] 2026-03-15 15:45:47,167 | INFO     | total number of processed events: 400 (read)
[2026-03-15 16:46:20] 2026-03-15 15:45:47,185 | INFO     | using path: /var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7046914163/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 16:46:20] 2026-03-15 15:45:47,185 | INFO     | extracted standard info from prmon json
[2026-03-15 16:46:20] 2026-03-15 15:45:47,185 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 16:46:20] 2026-03-15 15:45:47,185 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 16:46:20] 2026-03-15 15:45:47,185 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 16:46:20] 2026-03-15 15:45:47,185 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 16:46:20] 2026-03-15 15:45:47,186 | INFO     | fitting pss+swap vs Time
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | sum of square deviations: 101843770.0
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | sum of deviations: 432271010.0
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | mean x: 1773587331.0
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | mean y: 2318219.5507246377
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | intersect: -7525588366.140027
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | chi2: 4.09851843362018e-05
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | current memory leak: 4.24 B/s (using 69 data points, chi2=0.00)
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | could have reported an average CPU frequency of 3588 MHz (6 samples)
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | ..............................
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | . Timing measurements:
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | . get job = 0 s
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | . initial setup = 5 s
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | . payload setup = 5 s
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | . stage-in = 0 s
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | . payload execution = 4593 s
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | . stage-out = 0 s
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | . log creation = 0 s
[2026-03-15 16:46:20] 2026-03-15 15:45:47,187 | INFO     | ..............................
[2026-03-15 16:46:20] 2026-03-15 15:45:47,233 | INFO     | 
[2026-03-15 16:46:20] 2026-03-15 15:45:47,233 | INFO     | job summary report
[2026-03-15 16:46:20] 2026-03-15 15:45:47,233 | INFO     | --------------------------------------------------
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | PanDA job id: 7046914163
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | task id: 48955010
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | errors: (none)
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | pilot state: finished 
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | transexitcode: 0
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | exeerrorcode: 0
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | exeerrordiag: 
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | exitcode: 0
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | exitmsg: OK
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | cpuconsumptiontime: 17479 s
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | nevents: 400
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | neventsw: 0
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | pid: 616040
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | pgrp: 616040
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | corecount: 4
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | event service: False
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | sizes: {0: 2279757, 1: 2280218, 11: 2280218, 4603: 2306446, 4604: 2315466, 4605: 2315844}
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | --------------------------------------------------
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | 
[2026-03-15 16:46:20] 2026-03-15 15:45:47,234 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot88/slots/2
[2026-03-15 16:46:20] 2026-03-15 15:45:47,250 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,250 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,250 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,250 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | job 7046914163 has completed (purged errors)
[2026-03-15 16:46:20] 2026-03-15 15:45:47,251 | INFO     | overall cleanup function is called
[2026-03-15 16:46:20] 2026-03-15 15:45:47,933 | WARNING  | process 616040 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 16:46:20] 2026-03-15 15:45:48,257 | INFO     | using path: /var/lib/boinc/var/slot88/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 16:46:20] 2026-03-15 15:45:48,258 | INFO     | using path: /var/lib/boinc/var/slot88/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 16:46:20] 2026-03-15 15:45:48,258 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-15 16:46:20] 2026-03-15 15:45:48,258 | WARNING  | maxPSS not found in memory monitor output
[2026-03-15 16:46:20] 2026-03-15 15:45:48,258 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7046914163/payload.stdout) since it has not been created yet
[2026-03-15 16:46:20] 2026-03-15 15:45:48,258 | INFO     | executing command: df -mP /var/lib/boinc/var/slot88/slots/2
[2026-03-15 16:46:20] 2026-03-15 15:45:48,262 | INFO     | --- collectZombieJob: --- 10, [616040]
[2026-03-15 16:46:20] 2026-03-15 15:45:48,262 | INFO     | zombie collector waiting for pid 616040
[2026-03-15 16:46:20] 2026-03-15 15:45:48,262 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 16:46:20] 2026-03-15 15:45:48,263 | INFO     | collected zombie processes
[2026-03-15 16:46:20] 2026-03-15 15:45:48,263 | INFO     | will attempt to kill all subprocesses of pid=616040
[2026-03-15 16:46:20] 2026-03-15 15:45:48,277 | INFO     | sufficient remaining disk space (162888941568 B)
[2026-03-15 16:46:20] 2026-03-15 15:45:48,278 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-15 16:46:20] 2026-03-15 15:45:48,278 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7046914163/HITS.48955010._044031.pool.root.1 since it does not exist
[2026-03-15 16:46:20] 2026-03-15 15:45:49,306 | INFO     | process IDs to be killed: [616040] (in reverse order)
[2026-03-15 16:46:20] 2026-03-15 15:45:49,308 | INFO     | number of running child processes to parent process 616040: 1
[2026-03-15 16:46:20] 2026-03-15 15:45:49,308 | INFO     | maximum number of monitored processes: 6
[2026-03-15 16:46:20] 2026-03-15 15:45:49,308 | INFO     | aborting job monitoring since job object (job id=7046914163) has expired
[2026-03-15 16:46:20] 2026-03-15 15:45:49,523 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 16:46:20] 2026-03-15 15:45:49,523 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 16:46:20] 2026-03-15 15:45:49,552 | INFO     | did not find any defunct processes belonging to 616040
[2026-03-15 16:46:20] 2026-03-15 15:45:49,581 | INFO     | did not find any defunct processes belonging to 616040
[2026-03-15 16:46:20] 2026-03-15 15:45:49,581 | INFO     | ready for new job
[2026-03-15 16:46:20] 2026-03-15 15:45:49,581 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 16:46:20] 2026-03-15 15:45:49,582 | INFO     | **************************************
[2026-03-15 16:46:20] 2026-03-15 15:45:49,582 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 16:46:20] 2026-03-15 15:45:49,582 | INFO     | **************************************
[2026-03-15 16:46:20] 2026-03-15 15:45:49,582 | INFO     | 
[2026-03-15 16:46:20] 2026-03-15 15:45:49,588 | INFO     | architecture information:
[2026-03-15 16:46:20] 2026-03-15 15:45:49,588 | INFO     | executing command: cat /etc/os-release
[2026-03-15 16:46:20] 2026-03-15 15:45:49,601 | INFO     | cat /etc/os-release:
[2026-03-15 16:46:20] NAME="CentOS Linux"
[2026-03-15 16:46:20] VERSION="7 (Core)"
[2026-03-15 16:46:20] ID="centos"
[2026-03-15 16:46:20] ID_LIKE="rhel fedora"
[2026-03-15 16:46:20] VERSION_ID="7"
[2026-03-15 16:46:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 16:46:20] ANSI_COLOR="0;31"
[2026-03-15 16:46:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 16:46:20] HOME_URL="https://www.centos.org/"
[2026-03-15 16:46:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 16:46:20] 
[2026-03-15 16:46:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 16:46:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 16:46:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 16:46:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 16:46:20] 
[2026-03-15 16:46:20] 2026-03-15 15:45:49,601 | INFO     | **************************************
[2026-03-15 16:46:20] 2026-03-15 15:45:50,104 | INFO     | executing command: df -mP /var/lib/boinc/var/slot88/slots/2
[2026-03-15 16:46:20] 2026-03-15 15:45:50,118 | INFO     | sufficient remaining disk space (162885795840 B)
[2026-03-15 16:46:20] 2026-03-15 15:45:50,118 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 16:46:20] 2026-03-15 15:45:50,118 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 16:46:20] 2026-03-15 15:45:50,118 | INFO     | update_server=False
[2026-03-15 16:46:20] 2026-03-15 15:45:50,118 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 16:46:20] 2026-03-15 15:45:50,118 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 16:46:20] 2026-03-15 15:45:50,119 | INFO     | will abort loop
[2026-03-15 16:46:20] 2026-03-15 15:45:50,469 | INFO     | job.realtimelogging is not enabled
[2026-03-15 16:46:20] 2026-03-15 15:45:50,481 | INFO     | all data control threads have been joined
[2026-03-15 16:46:20] 2026-03-15 15:45:50,495 | INFO     | all job control threads have been joined
[2026-03-15 16:46:20] 2026-03-15 15:45:51,089 | INFO     | all payload control threads have been joined
[2026-03-15 16:46:20] 2026-03-15 15:45:51,123 | INFO     | [job] retrieve thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:51,124 | INFO     | [job] job monitor thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:51,129 | INFO     | [payload] validate_post thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:51,268 | INFO     | [data] copytool_in thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:51,380 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 16:46:20] 2026-03-15 15:45:51,474 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:51,486 | INFO     | [data] control thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:51,501 | INFO     | [job] control thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:51,878 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:52,095 | INFO     | [payload] control thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:52,243 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 16:46:20] 2026-03-15 15:45:52,272 | INFO     | [job] validate thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:52,332 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:52,345 | INFO     | [payload] failed_post thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:52,568 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:53,170 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 16:46:20] 2026-03-15 15:45:53,248 | INFO     | [job] queue monitor thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:53,386 | INFO     | [data] copytool_out thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:57,175 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 16:46:20] 2026-03-15 15:45:58,623 | INFO     | [monitor] cgroup control has ended
[2026-03-15 16:46:20] 2026-03-15 15:45:59,029 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23368628262720)>', '<ExcThread(monitor, started 23368387798784)>']
[2026-03-15 16:46:20] 2026-03-15 15:46:04,054 | INFO     | all workflow threads have been joined
[2026-03-15 16:46:20] 2026-03-15 15:46:04,055 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 16:46:20] 2026-03-15 15:46:04,055 | INFO     | traces error code: 0
[2026-03-15 16:46:20] 2026-03-15 15:46:04,055 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 16:46:20] 2026-03-15 15:46:20,351 | INFO     | PID=600801 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 16:46:20] 2026-03-15 15:46:20,351 | INFO     | .. there are 47 such processes running
[2026-03-15 16:46:20] 2026-03-15 15:46:20,351 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 16:46:20] 2026-03-15 15:46:20,351 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 16:46:20] 2026-03-15 15:46:20,351 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 16:46:20] 2026-03-15 15:46:20,351 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 16:46:20] 2026-03-15 15:46:20,351 | INFO     | [monitor] control thread has ended
[2026-03-15 16:46:20] 2026-03-15 15:46:20,482 [wrapper] ==== pilot stdout END ====
[2026-03-15 16:46:20] 2026-03-15 15:46:20,484 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 16:46:20] 2026-03-15 15:46:20,487 [wrapper] pilotpid: 600801
[2026-03-15 16:46:20] 2026-03-15 15:46:20,489 [wrapper] Pilot exit status: 0
[2026-03-15 16:46:20] 2026-03-15 15:46:20,499 [wrapper] pandaids: 7046914163
[2026-03-15 16:46:20] 2026-03-15 15:46:20,626 [wrapper] cleanup supervisor_pilot 1304396 600802
[2026-03-15 16:46:20] 2026-03-15 15:46:20,628 [wrapper] Test setup, not cleaning
[2026-03-15 16:46:20] 2026-03-15 15:46:20,630 [wrapper] apfmon messages muted
[2026-03-15 16:46:20] 2026-03-15 15:46:20,632 [wrapper] ==== wrapper stdout END ====
[2026-03-15 16:46:20] 2026-03-15 15:46:20,634 [wrapper] ==== wrapper stderr END ====
[2026-03-15 16:46:20]  *** Error codes and diagnostics ***
[2026-03-15 16:46:20]     "exeErrorCode": 0,
[2026-03-15 16:46:20]     "exeErrorDiag": "",
[2026-03-15 16:46:20]     "pilotErrorCode": 0,
[2026-03-15 16:46:20]     "pilotErrorDiag": "",
[2026-03-15 16:46:20]  *** Listing of results directory ***
[2026-03-15 16:46:20] total 614320
[2026-03-15 16:46:20] -rw-r--r--. 1 boinc boinc    585013 Mar 14 14:10 pilot3.tar.gz
[2026-03-15 16:46:20] -rw-r--r--. 1 boinc boinc      5111 Mar 14 14:10 queuedata.json
[2026-03-15 16:46:20] -rwx------. 1 boinc boinc     36322 Mar 14 14:11 runpilot2-wrapper.sh
[2026-03-15 16:46:20] -rw-r--r--. 1 boinc boinc       100 Mar 15 15:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 16:46:20] -rwxr-xr-x. 1 boinc boinc      7986 Mar 15 15:28 run_atlas
[2026-03-15 16:46:20] -rw-r--r--. 1 boinc boinc       105 Mar 15 15:28 job.xml
[2026-03-15 16:46:20] -rw-r--r--. 1 boinc boinc      6708 Mar 15 15:28 init_data.xml
[2026-03-15 16:46:20] -rw-r--r--. 2 boinc boinc 444447192 Mar 15 15:28 EVNT.46701403._001901.pool.root.1
[2026-03-15 16:46:20] -rw-r--r--. 2 boinc boinc     15845 Mar 15 15:28 start_atlas.sh
[2026-03-15 16:46:20] drwxrwx--x. 2 boinc boinc      4096 Mar 15 15:28 shared
[2026-03-15 16:46:20] -rw-r--r--. 2 boinc boinc    597531 Mar 15 15:28 input.tar.gz
[2026-03-15 16:46:20] -rw-r--r--. 1 boinc boinc         0 Mar 15 15:28 boinc_lockfile
[2026-03-15 16:46:20] -rw-r--r--. 1 boinc boinc      2563 Mar 15 15:28 pandaJob.out
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc   1006481 Mar 15 15:28 agis_schedconf.cvmfs.json
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc   1511579 Mar 15 15:28 agis_ddmendpoints.agis.ALL.json
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc       444 Mar 15 15:28 workernode_map.json
[2026-03-15 16:46:20] drwx------. 5 boinc boinc      4096 Mar 15 15:28 pilot3
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc 178814660 Mar 15 16:45 HITS.48955010._044031.pool.root.1
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc        95 Mar 15 16:45 pilot_heartbeat.json
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc      1028 Mar 15 16:45 memory_monitor_summary.json
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc    256519 Mar 15 16:45 log.48955010._044031.job.log.tgz.1
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc      6350 Mar 15 16:45 heartbeat.json
[2026-03-15 16:46:20] -rw-r--r--. 1 boinc boinc       530 Mar 15 16:45 boinc_task_state.xml
[2026-03-15 16:46:20] -rw-r--r--. 1 boinc boinc        27 Mar 15 16:46 wrapper_checkpoint.txt
[2026-03-15 16:46:20] -rw-r--r--. 1 boinc boinc      8192 Mar 15 16:46 boinc_mmap_file
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc       822 Mar 15 16:46 pilotlog.txt
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc    678653 Mar 15 16:46 log.48955010._044031.job.log.1
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc       357 Mar 15 16:46 output.list
[2026-03-15 16:46:20] -rw-r--r--. 1 boinc boinc       620 Mar 15 16:46 runtime_log
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc    952320 Mar 15 16:46 result.tar.gz
[2026-03-15 16:46:20] -rw-r--r--. 1 boinc boinc      9204 Mar 15 16:46 runtime_log.err
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc       662 Mar 15 16:46 PHoNDmrwdL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmv4sLDm3kIQPn.diag
[2026-03-15 16:46:20] -rw-r--r--. 1 boinc boinc     22077 Mar 15 16:46 stderr.txt
[2026-03-15 16:46:20] HITS file was successfully produced:
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc 178814660 Mar 15 16:45 shared/HITS.pool.root.1
[2026-03-15 16:46:20]  *** Contents of shared directory: ***
[2026-03-15 16:46:20] total 610196
[2026-03-15 16:46:20] -rw-r--r--. 2 boinc boinc 444447192 Mar 15 15:28 ATLAS.root_0
[2026-03-15 16:46:20] -rw-r--r--. 2 boinc boinc     15845 Mar 15 15:28 start_atlas.sh
[2026-03-15 16:46:20] -rw-r--r--. 2 boinc boinc    597531 Mar 15 15:28 input.tar.gz
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc 178814660 Mar 15 16:45 HITS.pool.root.1
[2026-03-15 16:46:20] -rw-------. 1 boinc boinc    952320 Mar 15 16:46 result.tar.gz
16:46:22 (593242): run_atlas exited; CPU time 17692.964435
16:46:22 (593242): called boinc_finish(0)

</stderr_txt>
]]>

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