Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:42:25 (1040459): wrapper (7.7.26015): starting
07:42:25 (1040459): wrapper: running run_atlas (--nthreads 3)
[2026-03-15 07:42:25] Arguments: --nthreads 3
[2026-03-15 07:42:25] Threads: 3
[2026-03-15 07:42:25] Checking for CVMFS
[2026-03-15 07:42:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 07:42:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 07:42:25] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 07:42:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 07:42:26] 2.9.2.0 5444 6548 84260 157304 2 50 32907624 36864001 0 130560 0 2918882 99.984 247549 15694 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 07:42:26] CVMFS is ok
[2026-03-15 07:42:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 07:42:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 07:42:26] Further information can be found at the LHC@home message board.
[2026-03-15 07:42:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 07:42:26] Checking for apptainer binary...
[2026-03-15 07:42:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 07:42:26] Running /usr/bin/apptainer --version
[2026-03-15 07:42:26] apptainer version 1.4.1-1.1
[2026-03-15 07:42:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 07:42:26] magicA161a
[2026-03-15 07:42:26] apptainer works
[2026-03-15 07:42:26] Set ATHENA_PROC_NUMBER=3
[2026-03-15 07:42:26] Set ATHENA_CORE_NUMBER=3
[2026-03-15 07:42:26] Starting ATLAS job with PandaID=7047463578
[2026-03-15 07:42:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 08:58:48]  *** The last 200 lines of the pilot log: ***
[2026-03-15 08:58:48] 2026-03-15 07:58:23,938 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 08:58:48] 2026-03-15 07:58:23,938 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 08:58:48] 2026-03-15 07:58:23,938 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 08:58:48] 2026-03-15 07:58:23,938 | INFO     | job 7047463578 has completed (purged errors)
[2026-03-15 08:58:48] 2026-03-15 07:58:23,938 | INFO     | overall cleanup function is called
[2026-03-15 08:58:48] 2026-03-15 07:58:24,944 | INFO     | --- collectZombieJob: --- 10, [1048929]
[2026-03-15 08:58:48] 2026-03-15 07:58:24,945 | INFO     | zombie collector waiting for pid 1048929
[2026-03-15 08:58:48] 2026-03-15 07:58:24,945 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 08:58:48] 2026-03-15 07:58:24,945 | INFO     | collected zombie processes
[2026-03-15 08:58:48] 2026-03-15 07:58:24,945 | INFO     | will attempt to kill all subprocesses of pid=1048929
[2026-03-15 08:58:48] 2026-03-15 07:58:24,986 | INFO     | process IDs to be killed: [1048929] (in reverse order)
[2026-03-15 08:58:48] 2026-03-15 07:58:25,010 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 08:58:48] 2026-03-15 07:58:25,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 08:58:48] 2026-03-15 07:58:25,011 | INFO     | did not find any defunct processes belonging to 1048929
[2026-03-15 08:58:48] 2026-03-15 07:58:25,012 | INFO     | did not find any defunct processes belonging to 1048929
[2026-03-15 08:58:48] 2026-03-15 07:58:25,013 | INFO     | ready for new job
[2026-03-15 08:58:48] 2026-03-15 07:58:25,013 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 08:58:48] 2026-03-15 07:58:25,013 | INFO     | **************************************
[2026-03-15 08:58:48] 2026-03-15 07:58:25,013 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 08:58:48] 2026-03-15 07:58:25,013 | INFO     | **************************************
[2026-03-15 08:58:48] 2026-03-15 07:58:25,013 | INFO     | 
[2026-03-15 08:58:48] 2026-03-15 07:58:25,014 | INFO     | architecture information:
[2026-03-15 08:58:48] 2026-03-15 07:58:25,014 | INFO     | executing command: cat /etc/os-release
[2026-03-15 08:58:48] 2026-03-15 07:58:25,023 | INFO     | cat /etc/os-release:
[2026-03-15 08:58:48] NAME="CentOS Linux"
[2026-03-15 08:58:48] VERSION="7 (Core)"
[2026-03-15 08:58:48] ID="centos"
[2026-03-15 08:58:48] ID_LIKE="rhel fedora"
[2026-03-15 08:58:48] VERSION_ID="7"
[2026-03-15 08:58:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 08:58:48] ANSI_COLOR="0;31"
[2026-03-15 08:58:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 08:58:48] HOME_URL="https://www.centos.org/"
[2026-03-15 08:58:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 08:58:48] 
[2026-03-15 08:58:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 08:58:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 08:58:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 08:58:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 08:58:48] 
[2026-03-15 08:58:48] 2026-03-15 07:58:25,023 | INFO     | **************************************
[2026-03-15 08:58:48] 2026-03-15 07:58:25,526 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 08:58:48] 2026-03-15 07:58:25,540 | INFO     | sufficient remaining disk space (371019743232 B)
[2026-03-15 08:58:48] 2026-03-15 07:58:25,540 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 08:58:48] 2026-03-15 07:58:25,540 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 08:58:48] 2026-03-15 07:58:25,540 | INFO     | update_server=False
[2026-03-15 08:58:48] 2026-03-15 07:58:25,540 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 08:58:48] 2026-03-15 07:58:25,540 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-15 08:58:48] 2026-03-15 07:58:25,540 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 08:58:48] 2026-03-15 07:58:25,540 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 08:58:48] 2026-03-15 07:58:25,541 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 08:58:48] 2026-03-15 07:58:25,541 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 08:58:48] 2026-03-15 07:58:25,541 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 08:58:48] 2026-03-15 07:58:26,417 | INFO     | all data control threads have been joined
[2026-03-15 08:58:48] 2026-03-15 07:58:26,541 | INFO     | [job] retrieve thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:26,546 | INFO     | [job] queue monitor thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:26,549 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:26,692 | INFO     | [payload] validate_post thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:26,697 | INFO     | [data] copytool_in thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:26,867 | INFO     | all payload control threads have been joined
[2026-03-15 08:58:48] 2026-03-15 07:58:26,998 | WARNING  | process 1048929 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 08:58:48] 2026-03-15 07:58:27,026 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 08:58:48] 2026-03-15 07:58:27,061 | INFO     | number of running child processes to parent process 1048929: 1
[2026-03-15 08:58:48] 2026-03-15 07:58:27,062 | INFO     | maximum number of monitored processes: 6
[2026-03-15 08:58:48] 2026-03-15 07:58:27,062 | INFO     | aborting job monitoring since job object (job id=7047463578) has expired
[2026-03-15 08:58:48] 2026-03-15 07:58:27,062 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 08:58:48] 2026-03-15 07:58:27,062 | INFO     | will abort loop
[2026-03-15 08:58:48] 2026-03-15 07:58:27,223 | INFO     | all job control threads have been joined
[2026-03-15 08:58:48] 2026-03-15 07:58:27,248 | INFO     | [payload] failed_post thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:27,423 | INFO     | [data] control thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:27,547 | INFO     | [data] copytool_out thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:27,729 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 08:58:48] 2026-03-15 07:58:27,869 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:27,873 | INFO     | [payload] control thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:27,952 | INFO     | [job] validate thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:27,982 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:28,067 | INFO     | [job] job monitor thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:28,229 | INFO     | [job] control thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:31,736 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:35,782 | INFO     | job.realtimelogging is not enabled
[2026-03-15 08:58:48] 2026-03-15 07:58:36,784 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 08:58:48] 2026-03-15 07:58:41,452 | INFO     | [monitor] cgroup control has ended
[2026-03-15 08:58:48] 2026-03-15 07:58:43,071 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140507100342080)>', '<ExcThread(monitor, started 140506600290048)>']
[2026-03-15 08:58:48] 2026-03-15 07:58:43,633 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 08:58:48] 2026-03-15 07:58:43,633 | INFO     | [monitor] control thread has ended
[2026-03-15 08:58:48] 2026-03-15 07:58:48,097 | INFO     | all workflow threads have been joined
[2026-03-15 08:58:48] 2026-03-15 07:58:48,097 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 08:58:48] 2026-03-15 07:58:48,097 | INFO     | traces error code: 0
[2026-03-15 08:58:48] 2026-03-15 07:58:48,097 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 08:58:48] 2026-03-15 07:58:48,146 [wrapper] ==== pilot stdout END ====
[2026-03-15 08:58:48] 2026-03-15 07:58:48,149 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 08:58:48] 2026-03-15 07:58:48,151 [wrapper] pilotpid: 1044500
[2026-03-15 08:58:48] 2026-03-15 07:58:48,153 [wrapper] Pilot exit status: 0
[2026-03-15 08:58:48] 2026-03-15 07:58:48,161 [wrapper] pandaids: 7047463578
[2026-03-15 08:58:48] 2026-03-15 07:58:48,176 [wrapper] cleanup supervisor_pilot 1054274 1044501
[2026-03-15 08:58:48] 2026-03-15 07:58:48,179 [wrapper] Test setup, not cleaning
[2026-03-15 08:58:48] 2026-03-15 07:58:48,181 [wrapper] apfmon messages muted
[2026-03-15 08:58:48] 2026-03-15 07:58:48,183 [wrapper] ==== wrapper stdout END ====
[2026-03-15 08:58:48] 2026-03-15 07:58:48,186 [wrapper] ==== wrapper stderr END ====
[2026-03-15 08:58:48]  *** Error codes and diagnostics ***
[2026-03-15 08:58:48]     "exeErrorCode": 0,
[2026-03-15 08:58:48]     "exeErrorDiag": "",
[2026-03-15 08:58:48]     "pilotErrorCode": 0,
[2026-03-15 08:58:48]     "pilotErrorDiag": "",
[2026-03-15 08:58:48]  *** Listing of results directory ***
[2026-03-15 08:58:48] total 611076
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc    585013 Mar 14 17:40 pilot3.tar.gz
[2026-03-15 08:58:48] -rwx------ 1 boinc boinc     36322 Mar 14 17:45 runpilot2-wrapper.sh
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc      5111 Mar 14 17:50 queuedata.json
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc       100 Mar 15 07:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 08:58:48] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 07:42 run_atlas
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc       105 Mar 15 07:42 job.xml
[2026-03-15 08:58:48] -rw-r--r-- 2 boinc boinc 435490759 Mar 15 07:42 EVNT.46701403._001986.pool.root.1
[2026-03-15 08:58:48] -rw-r--r-- 2 boinc boinc    597530 Mar 15 07:42 input.tar.gz
[2026-03-15 08:58:48] -rw-r--r-- 2 boinc boinc     15845 Mar 15 07:42 start_atlas.sh
[2026-03-15 08:58:48] drwxrwx--x 2 boinc boinc      4096 Mar 15 07:42 shared
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc         0 Mar 15 07:42 boinc_setup_complete
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc      6449 Mar 15 07:42 init_data.xml
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc         0 Mar 15 07:42 boinc_lockfile
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc      2562 Mar 15 07:42 pandaJob.out
[2026-03-15 08:58:48] -rw------- 1 boinc boinc   1006481 Mar 15 07:42 agis_schedconf.cvmfs.json
[2026-03-15 08:58:48] -rw------- 1 boinc boinc   1511579 Mar 15 07:42 agis_ddmendpoints.agis.ALL.json
[2026-03-15 08:58:48] -rw------- 1 boinc boinc       427 Mar 15 07:42 workernode_map.json
[2026-03-15 08:58:48] drwx------ 5 boinc boinc      4096 Mar 15 07:42 pilot3
[2026-03-15 08:58:48] -rw------- 1 boinc boinc        95 Mar 15 08:57 pilot_heartbeat.json
[2026-03-15 08:58:48] -rw------- 1 boinc boinc 184522864 Mar 15 08:58 HITS.48955010._048051.pool.root.1
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc       530 Mar 15 08:58 boinc_task_state.xml
[2026-03-15 08:58:48] -rw------- 1 boinc boinc      1013 Mar 15 08:58 memory_monitor_summary.json
[2026-03-15 08:58:48] -rw------- 1 boinc boinc    235229 Mar 15 08:58 log.48955010._048051.job.log.tgz.1
[2026-03-15 08:58:48] -rw------- 1 boinc boinc      6306 Mar 15 08:58 heartbeat.json
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc      8192 Mar 15 08:58 boinc_mmap_file
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc        27 Mar 15 08:58 wrapper_checkpoint.txt
[2026-03-15 08:58:48] -rw------- 1 boinc boinc      5148 Mar 15 08:58 pilotlog.txt
[2026-03-15 08:58:48] -rw------- 1 boinc boinc    670838 Mar 15 08:58 log.48955010._048051.job.log.1
[2026-03-15 08:58:48] -rw------- 1 boinc boinc       357 Mar 15 08:58 output.list
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc       620 Mar 15 08:58 runtime_log
[2026-03-15 08:58:48] -rw------- 1 boinc boinc    921600 Mar 15 08:58 result.tar.gz
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc      8916 Mar 15 08:58 runtime_log.err
[2026-03-15 08:58:48] -rw------- 1 boinc boinc       661 Mar 15 08:58 CARNDmzHhL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm8otLDmlEXaNm.diag
[2026-03-15 08:58:48] -rw-r--r-- 1 boinc boinc     11759 Mar 15 08:58 stderr.txt
[2026-03-15 08:58:48] HITS file was successfully produced:
[2026-03-15 08:58:48] -rw------- 1 boinc boinc 184522864 Mar 15 08:58 shared/HITS.pool.root.1
[2026-03-15 08:58:48]  *** Contents of shared directory: ***
[2026-03-15 08:58:48] total 606988
[2026-03-15 08:58:48] -rw-r--r-- 2 boinc boinc 435490759 Mar 15 07:42 ATLAS.root_0
[2026-03-15 08:58:48] -rw-r--r-- 2 boinc boinc    597530 Mar 15 07:42 input.tar.gz
[2026-03-15 08:58:48] -rw-r--r-- 2 boinc boinc     15845 Mar 15 07:42 start_atlas.sh
[2026-03-15 08:58:48] -rw------- 1 boinc boinc 184522864 Mar 15 08:58 HITS.pool.root.1
[2026-03-15 08:58:48] -rw------- 1 boinc boinc    921600 Mar 15 08:58 result.tar.gz
08:58:49 (1040459): run_atlas exited; CPU time 12693.138421
08:58:49 (1040459): called boinc_finish(0)

</stderr_txt>
]]>

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