Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:29:51 (3730962): wrapper (7.7.26015): starting
14:29:51 (3730962): wrapper: running run_atlas (--nthreads 4)
[2026-03-21 14:29:51] Arguments: --nthreads 4
[2026-03-21 14:29:51] Threads: 4
[2026-03-21 14:29:51] Checking for CVMFS
[2026-03-21 14:29:51] No cvmfs_config command found, will try listing directly
[2026-03-21 14:29:51] CVMFS is ok
[2026-03-21 14:29:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-21 14:29:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-21 14:29:51] Further information can be found at the LHC@home message board.
[2026-03-21 14:29:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-21 14:29:51] Checking for apptainer binary...
[2026-03-21 14:29:51] which: no apptainer in ((null))
[2026-03-21 14:29:51] apptainer is not installed, using version from CVMFS
[2026-03-21 14:29:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-21 14:29:51] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot40/slots/5/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2026-03-21 14:29:51] apptainer works
[2026-03-21 14:29:51] Set ATHENA_PROC_NUMBER=4
[2026-03-21 14:29:51] Set ATHENA_CORE_NUMBER=4
[2026-03-21 14:29:51] Starting ATLAS job with PandaID=7054978781
[2026-03-21 14:29:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot40/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-21 17:54:42]  *** The last 200 lines of the pilot log: ***
[2026-03-21 17:54:42] 2026-03-21 16:53:49,307 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-21 17:54:42] 2026-03-21 16:53:49,693 | INFO     | time since job start (12214s) is within the limit (345600.0s)
[2026-03-21 17:54:42] 2026-03-21 16:53:49,864 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-21 17:54:42] 2026-03-21 16:53:49,865 | INFO     | reading metadata from: /var/lib/boinc/var/slot40/slots/5/PanDA_Pilot-7054978781/jobReport.json
[2026-03-21 17:54:42] 2026-03-21 16:53:49,868 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot40/slots/5/workernode_map.json
[2026-03-21 17:54:42] 2026-03-21 16:53:49,869 | INFO     | this job has now completed (state=finished)
[2026-03-21 17:54:42] 2026-03-21 16:53:49,869 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-21 17:54:42] 2026-03-21 16:53:49,869 | INFO     | log transfer has been attempted: DONE
[2026-03-21 17:54:42] 2026-03-21 16:53:49,869 | INFO     | job 7054978781 has finished - writing final server update
[2026-03-21 17:54:42] 2026-03-21 16:53:49,870 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3434663/.job.ad'
[2026-03-21 17:54:42] 2026-03-21 16:53:49,870 | INFO     | total number of processed events: 400 (read)
[2026-03-21 17:54:42] 2026-03-21 16:53:49,894 | INFO     | using path: /var/lib/boinc/var/slot40/slots/5/PanDA_Pilot-7054978781/memory_monitor_summary.json (trf name=prmon)
[2026-03-21 17:54:42] 2026-03-21 16:53:49,895 | INFO     | extracted standard info from prmon json
[2026-03-21 17:54:42] 2026-03-21 16:53:49,895 | INFO     | extracted standard memory fields from prmon json
[2026-03-21 17:54:42] 2026-03-21 16:53:49,895 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-21 17:54:42] 2026-03-21 16:53:49,895 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-21 17:54:42] 2026-03-21 16:53:49,895 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-21 17:54:42] 2026-03-21 16:53:49,899 | INFO     | fitting pss+swap vs Time
[2026-03-21 17:54:42] 2026-03-21 16:53:49,900 | INFO     | sum of square deviations: 2480604650.0
[2026-03-21 17:54:42] 2026-03-21 16:53:49,901 | INFO     | sum of deviations: 7709611758.000001
[2026-03-21 17:54:42] 2026-03-21 16:53:49,901 | INFO     | mean x: 1774105919.5
[2026-03-21 17:54:42] 2026-03-21 16:53:49,901 | INFO     | mean y: 2331571.08
[2026-03-21 17:54:42] 2026-03-21 16:53:49,901 | INFO     | intersect: -5511512747.850307
[2026-03-21 17:54:42] 2026-03-21 16:53:49,902 | INFO     | chi2: 1.2526478239038206
[2026-03-21 17:54:42] 2026-03-21 16:53:49,902 | INFO     | sum of square deviations: 2299168690.0
[2026-03-21 17:54:42] 2026-03-21 16:53:49,903 | INFO     | sum of deviations: 7493466676.000002
[2026-03-21 17:54:42] 2026-03-21 16:53:49,903 | INFO     | mean x: 1774105767.0
[2026-03-21 17:54:42] 2026-03-21 16:53:49,903 | INFO     | mean y: 2331390.5076923077
[2026-03-21 17:54:42] 2026-03-21 16:53:49,904 | INFO     | intersect: -5779846534.294304
[2026-03-21 17:54:42] 2026-03-21 16:53:49,904 | INFO     | chi2: 1.253131644593406
[2026-03-21 17:54:42] 2026-03-21 16:53:49,904 | INFO     | current chi2=1.253131644593406 (change=-0.03862383986567007 %)
[2026-03-21 17:54:42] 2026-03-21 16:53:49,904 | INFO     | right removable region: 194
[2026-03-21 17:54:42] 2026-03-21 16:53:49,904 | INFO     | sum of square deviations: 2299168690.0
[2026-03-21 17:54:42] 2026-03-21 16:53:49,906 | INFO     | sum of deviations: -12958450332.0
[2026-03-21 17:54:42] 2026-03-21 16:53:49,906 | INFO     | mean x: 1774106072.0
[2026-03-21 17:54:42] 2026-03-21 16:53:49,906 | INFO     | mean y: 2348640.446153846
[2026-03-21 17:54:42] 2026-03-21 16:53:49,906 | INFO     | intersect: 10001469417.317736
[2026-03-21 17:54:42] 2026-03-21 16:53:49,906 | INFO     | chi2: 0.029279071548145578
[2026-03-21 17:54:42] 2026-03-21 16:53:49,906 | INFO     | current chi2=0.029279071548145578 (change=97.66262544113167 %)
[2026-03-21 17:54:42] 2026-03-21 16:53:49,907 | INFO     | sum of square deviations: 2126802667.5
[2026-03-21 17:54:42] 2026-03-21 16:53:49,908 | INFO     | sum of deviations: -10692925185.49999
[2026-03-21 17:54:42] 2026-03-21 16:53:49,908 | INFO     | mean x: 1774106224.5
[2026-03-21 17:54:42] 2026-03-21 16:53:49,908 | INFO     | mean y: 2346612.5631578946
[2026-03-21 17:54:42] 2026-03-21 16:53:49,908 | INFO     | intersect: 8922019988.75256
[2026-03-21 17:54:42] 2026-03-21 16:53:49,908 | INFO     | chi2: 0.02341130300900218
[2026-03-21 17:54:42] 2026-03-21 16:53:49,909 | INFO     | current chi2=0.02341130300900218 (change=20.04082858124318 %)
[2026-03-21 17:54:42] 2026-03-21 16:53:49,909 | INFO     | left removable region: 20
[2026-03-21 17:54:42] 2026-03-21 16:53:49,909 | INFO     | sum of square deviations: 1633472487.5
[2026-03-21 17:54:42] 2026-03-21 16:53:49,910 | INFO     | sum of deviations: -5517079364.0
[2026-03-21 17:54:42] 2026-03-21 16:53:49,910 | INFO     | mean x: 1774106346.5
[2026-03-21 17:54:42] 2026-03-21 16:53:49,910 | INFO     | mean y: 2341944.528735632
[2026-03-21 17:54:42] 2026-03-21 16:53:49,910 | INFO     | intersect: 5994414408.997828
[2026-03-21 17:54:42] 2026-03-21 16:53:49,911 | INFO     | chi2: 0.012690110100787461
[2026-03-21 17:54:42] 2026-03-21 16:53:49,911 | INFO     | current memory leak: -3.38 B/s (using 174 data points, chi2=0.01)
[2026-03-21 17:54:42] 2026-03-21 16:53:49,911 | INFO     | could have reported an average CPU frequency of 2712 MHz (10 samples)
[2026-03-21 17:54:42] 2026-03-21 16:53:49,911 | INFO     | ..............................
[2026-03-21 17:54:42] 2026-03-21 16:53:49,911 | INFO     | . Timing measurements:
[2026-03-21 17:54:42] 2026-03-21 16:53:49,911 | INFO     | . get job = 0 s
[2026-03-21 17:54:42] 2026-03-21 16:53:49,912 | INFO     | . initial setup = 8 s
[2026-03-21 17:54:42] 2026-03-21 16:53:49,912 | INFO     | . payload setup = 15 s
[2026-03-21 17:54:42] 2026-03-21 16:53:49,912 | INFO     | . stage-in = 0 s
[2026-03-21 17:54:42] 2026-03-21 16:53:49,912 | INFO     | . payload execution = 12177 s
[2026-03-21 17:54:42] 2026-03-21 16:53:49,912 | INFO     | . stage-out = 1 s
[2026-03-21 17:54:42] 2026-03-21 16:53:49,912 | INFO     | . log creation = 0 s
[2026-03-21 17:54:42] 2026-03-21 16:53:49,912 | INFO     | ..............................
[2026-03-21 17:54:42] 2026-03-21 16:53:50,155 | INFO     | 
[2026-03-21 17:54:42] 2026-03-21 16:53:50,155 | INFO     | job summary report
[2026-03-21 17:54:42] 2026-03-21 16:53:50,155 | INFO     | --------------------------------------------------
[2026-03-21 17:54:42] 2026-03-21 16:53:50,155 | INFO     | PanDA job id: 7054978781
[2026-03-21 17:54:42] 2026-03-21 16:53:50,156 | INFO     | task id: 48967085
[2026-03-21 17:54:42] 2026-03-21 16:53:50,156 | INFO     | errors: (none)
[2026-03-21 17:54:42] 2026-03-21 16:53:50,156 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-21 17:54:42] 2026-03-21 16:53:50,156 | INFO     | pilot state: finished 
[2026-03-21 17:54:42] 2026-03-21 16:53:50,156 | INFO     | transexitcode: 0
[2026-03-21 17:54:42] 2026-03-21 16:53:50,156 | INFO     | exeerrorcode: 0
[2026-03-21 17:54:42] 2026-03-21 16:53:50,156 | INFO     | exeerrordiag: 
[2026-03-21 17:54:42] 2026-03-21 16:53:50,156 | INFO     | exitcode: 0
[2026-03-21 17:54:42] 2026-03-21 16:53:50,156 | INFO     | exitmsg: OK
[2026-03-21 17:54:42] 2026-03-21 16:53:50,156 | INFO     | cpuconsumptiontime: 46097 s
[2026-03-21 17:54:42] 2026-03-21 16:53:50,156 | INFO     | nevents: 400
[2026-03-21 17:54:42] 2026-03-21 16:53:50,156 | INFO     | neventsw: 0
[2026-03-21 17:54:42] 2026-03-21 16:53:50,157 | INFO     | pid: 3741162
[2026-03-21 17:54:42] 2026-03-21 16:53:50,157 | INFO     | pgrp: 3741162
[2026-03-21 17:54:42] 2026-03-21 16:53:50,157 | INFO     | corecount: 4
[2026-03-21 17:54:42] 2026-03-21 16:53:50,157 | INFO     | event service: False
[2026-03-21 17:54:42] 2026-03-21 16:53:50,157 | INFO     | sizes: {0: 2279992, 1: 2280282, 11: 2280282, 12196: 2310559, 12197: 2310558, 12198: 2319634, 12201: 2319818, 12203: 2320012}
[2026-03-21 17:54:42] 2026-03-21 16:53:50,157 | INFO     | --------------------------------------------------
[2026-03-21 17:54:42] 2026-03-21 16:53:50,157 | INFO     | 
[2026-03-21 17:54:42] 2026-03-21 16:53:50,157 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot40/slots/5
[2026-03-21 17:54:42] 2026-03-21 16:53:50,193 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,194 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,194 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,194 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,194 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,194 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,195 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,195 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,195 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,195 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,195 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,195 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,195 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,195 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,195 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,195 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,196 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,196 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-21 17:54:42] 2026-03-21 16:53:50,196 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,196 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-21 17:54:42] 2026-03-21 16:53:50,196 | INFO     | job 7054978781 has completed (purged errors)
[2026-03-21 17:54:42] 2026-03-21 16:53:50,196 | INFO     | overall cleanup function is called
[2026-03-21 17:54:42] 2026-03-21 16:53:51,205 | INFO     | --- collectZombieJob: --- 10, [3741162]
[2026-03-21 17:54:42] 2026-03-21 16:53:51,205 | INFO     | zombie collector waiting for pid 3741162
[2026-03-21 17:54:42] 2026-03-21 16:53:51,205 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-21 17:54:42] 2026-03-21 16:53:51,206 | INFO     | collected zombie processes
[2026-03-21 17:54:42] 2026-03-21 16:53:51,206 | INFO     | will attempt to kill all subprocesses of pid=3741162
[2026-03-21 17:54:42] 2026-03-21 16:53:52,029 | INFO     | process IDs to be killed: [3741162] (in reverse order)
[2026-03-21 17:54:42] 2026-03-21 16:53:52,342 | WARNING  | found no corresponding commands to process id(s)
[2026-03-21 17:54:42] 2026-03-21 16:53:52,342 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-21 17:54:42] 2026-03-21 16:53:52,373 | INFO     | did not find any defunct processes belonging to 3741162
[2026-03-21 17:54:42] 2026-03-21 16:53:52,401 | INFO     | did not find any defunct processes belonging to 3741162
[2026-03-21 17:54:42] 2026-03-21 16:53:52,401 | INFO     | ready for new job
[2026-03-21 17:54:42] 2026-03-21 16:53:52,401 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-21 17:54:42] 2026-03-21 16:53:52,404 | INFO     | **************************************
[2026-03-21 17:54:42] 2026-03-21 16:53:52,404 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-21 17:54:42] 2026-03-21 16:53:52,404 | INFO     | **************************************
[2026-03-21 17:54:42] 2026-03-21 16:53:52,404 | INFO     | 
[2026-03-21 17:54:42] 2026-03-21 16:53:52,413 | INFO     | architecture information:
[2026-03-21 17:54:42] 2026-03-21 16:53:52,413 | INFO     | executing command: cat /etc/os-release
[2026-03-21 17:54:42] 2026-03-21 16:53:52,434 | INFO     | cat /etc/os-release:
[2026-03-21 17:54:42] NAME="CentOS Linux"
[2026-03-21 17:54:42] VERSION="7 (Core)"
[2026-03-21 17:54:42] ID="centos"
[2026-03-21 17:54:42] ID_LIKE="rhel fedora"
[2026-03-21 17:54:42] VERSION_ID="7"
[2026-03-21 17:54:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-21 17:54:42] ANSI_COLOR="0;31"
[2026-03-21 17:54:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-21 17:54:42] HOME_URL="https://www.centos.org/"
[2026-03-21 17:54:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-21 17:54:42] 
[2026-03-21 17:54:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-21 17:54:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-21 17:54:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-21 17:54:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-21 17:54:42] 
[2026-03-21 17:54:42] 2026-03-21 16:53:52,434 | INFO     | **************************************
[2026-03-21 17:54:42] 2026-03-21 16:53:52,936 | INFO     | executing command: df -mP /var/lib/boinc/var/slot40/slots/5
[2026-03-21 17:54:42] 2026-03-21 16:53:52,960 | INFO     | sufficient remaining disk space (227227467776 B)
[2026-03-21 17:54:42] 2026-03-21 16:53:52,961 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-21 17:54:42] 2026-03-21 16:53:52,961 | INFO     | current server update state: UPDATING_FINAL
[2026-03-21 17:54:42] 2026-03-21 16:53:52,961 | INFO     | update_server=False
[2026-03-21 17:54:42] 2026-03-21 16:53:52,961 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-21 17:54:42] 2026-03-21 16:53:52,961 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-21 17:54:42] 2026-03-21 16:53:52,961 | INFO     | aborting loop
[2026-03-21 17:54:42] 2026-03-21 16:53:53,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-21 17:54:42] 2026-03-21 16:53:53,177 | INFO     | all data control threads have been joined
[2026-03-21 17:54:42] 2026-03-21 16:53:53,655 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-21 17:54:42] 2026-03-21 16:53:53,913 | INFO     | all job control threads have been joined
[2026-03-21 17:54:42] 2026-03-21 16:53:53,967 | INFO     | [job] validate thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:53,967 | INFO     | [job] job monitor thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:53,967 | INFO     | [job] retrieve thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:54,002 | INFO     | [job] create_data_payload thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:54,141 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:54,142 | INFO     | [payload] validate_pre thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:54,182 | INFO     | [data] control thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:54,201 | INFO     | all payload control threads have been joined
[2026-03-21 17:54:42] 2026-03-21 16:53:54,302 | INFO     | [payload] validate_post thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:54,498 | INFO     | [data] copytool_in thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:54,823 | INFO     | [payload] execute_payloads thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:54,918 | INFO     | [job] control thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:55,018 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-21 17:54:42] 2026-03-21 16:53:55,084 | INFO     | [payload] failed_post thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:55,134 | INFO     | [data] copytool_out thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:55,207 | INFO     | [payload] control thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:56,023 | INFO     | [job] queue monitor thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:53:57,661 | INFO     | [data] queue_monitor thread has finished
[2026-03-21 17:54:42] 2026-03-21 16:54:23,738 | INFO     | PID=3735940 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-21 17:54:42] 2026-03-21 16:54:23,739 | INFO     | .. there are 21 such processes running
[2026-03-21 17:54:42] 2026-03-21 16:54:23,740 | INFO     | found 0 job(s) in 20 queues
[2026-03-21 17:54:42] 2026-03-21 16:54:23,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-21 17:54:42] 2026-03-21 16:54:23,740 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-21 17:54:42] 2026-03-21 16:54:35,551 | INFO     | [monitor] cgroup control has ended
[2026-03-21 17:54:42] 2026-03-21 16:54:36,963 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22451079542592)>', '<ExcThread(monitor, started 22450831353600)>']
[2026-03-21 17:54:42] 2026-03-21 16:54:37,802 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-21 17:54:42] 2026-03-21 16:54:37,802 | INFO     | [monitor] control thread has ended
[2026-03-21 17:54:42] 2026-03-21 16:54:41,987 | INFO     | all workflow threads have been joined
[2026-03-21 17:54:42] 2026-03-21 16:54:41,988 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-21 17:54:42] 2026-03-21 16:54:41,988 | INFO     | traces error code: 0
[2026-03-21 17:54:42] 2026-03-21 16:54:41,988 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-21 17:54:42] 2026-03-21 16:54:42,150 [wrapper] ==== pilot stdout END ====
[2026-03-21 17:54:42] 2026-03-21 16:54:42,154 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-21 17:54:42] 2026-03-21 16:54:42,158 [wrapper] pilotpid: 3735940
[2026-03-21 17:54:42] 2026-03-21 16:54:42,162 [wrapper] Pilot exit status: 0
[2026-03-21 17:54:42] 2026-03-21 16:54:42,178 [wrapper] pandaids: 7054978781
[2026-03-21 17:54:42] 2026-03-21 16:54:42,399 [wrapper] cleanup supervisor_pilot 4140434 3735941
[2026-03-21 17:54:42] 2026-03-21 16:54:42,404 [wrapper] Test setup, not cleaning
[2026-03-21 17:54:42] 2026-03-21 16:54:42,408 [wrapper] apfmon messages muted
[2026-03-21 17:54:42] 2026-03-21 16:54:42,412 [wrapper] ==== wrapper stdout END ====
[2026-03-21 17:54:42] 2026-03-21 16:54:42,416 [wrapper] ==== wrapper stderr END ====
[2026-03-21 17:54:42]  *** Error codes and diagnostics ***
[2026-03-21 17:54:42]     "exeErrorCode": 0,
[2026-03-21 17:54:42]     "exeErrorDiag": "",
[2026-03-21 17:54:42]     "pilotErrorCode": 0,
[2026-03-21 17:54:42]     "pilotErrorDiag": "",
[2026-03-21 17:54:42]  *** Listing of results directory ***
[2026-03-21 17:54:42] total 417908
[2026-03-21 17:54:42] -rw-r--r--. 1 boinc boinc    585013 Mar 14 17:40 pilot3.tar.gz
[2026-03-21 17:54:42] -rwx------. 1 boinc boinc     36322 Mar 14 17:44 runpilot2-wrapper.sh
[2026-03-21 17:54:42] -rw-r--r--. 1 boinc boinc      5111 Mar 14 17:48 queuedata.json
[2026-03-21 17:54:42] -rw-r--r--. 1 boinc boinc       100 Mar 21 14:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-21 17:54:42] -rwxr-xr-x. 1 boinc boinc      7986 Mar 21 14:29 run_atlas
[2026-03-21 17:54:42] -rw-r--r--. 1 boinc boinc       105 Mar 21 14:29 job.xml
[2026-03-21 17:54:42] -rw-r--r--. 2 boinc boinc 216076475 Mar 21 14:29 EVNT.48967083._000951.pool.root.1
[2026-03-21 17:54:42] -rw-r--r--. 1 boinc boinc      6622 Mar 21 14:29 init_data.xml
[2026-03-21 17:54:42] -rw-r--r--. 2 boinc boinc     15845 Mar 21 14:29 start_atlas.sh
[2026-03-21 17:54:42] drwxrwx--x. 2 boinc boinc      4096 Mar 21 14:29 shared
[2026-03-21 17:54:42] -rw-r--r--. 2 boinc boinc    597522 Mar 21 14:29 input.tar.gz
[2026-03-21 17:54:42] -rw-r--r--. 1 boinc boinc         0 Mar 21 14:29 boinc_lockfile
[2026-03-21 17:54:42] -rw-r--r--. 1 boinc boinc      2564 Mar 21 14:29 pandaJob.out
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc   1010663 Mar 21 14:30 agis_schedconf.cvmfs.json
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc       443 Mar 21 14:30 workernode_map.json
[2026-03-21 17:54:42] drwx------. 5 boinc boinc      4096 Mar 21 14:30 pilot3
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc 203820132 Mar 21 17:53 HITS.48967085._023654.pool.root.1
[2026-03-21 17:54:42] -rw-r--r--. 1 boinc boinc       529 Mar 21 17:53 boinc_task_state.xml
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc      1027 Mar 21 17:53 memory_monitor_summary.json
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc   1511579 Mar 21 17:53 agis_ddmendpoints.agis.ALL.json
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc    361388 Mar 21 17:53 log.48967085._023654.job.log.tgz.1
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc      6356 Mar 21 17:53 heartbeat.json
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc        95 Mar 21 17:54 pilot_heartbeat.json
[2026-03-21 17:54:42] -rw-r--r--. 1 boinc boinc      8192 Mar 21 17:54 boinc_mmap_file
[2026-03-21 17:54:42] -rw-r--r--. 1 boinc boinc        27 Mar 21 17:54 wrapper_checkpoint.txt
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc      4830 Mar 21 17:54 pilotlog.txt
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc   1686724 Mar 21 17:54 log.48967085._023654.job.log.1
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc       357 Mar 21 17:54 output.list
[2026-03-21 17:54:42] -rw-r--r--. 1 boinc boinc       620 Mar 21 17:54 runtime_log
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc   2068480 Mar 21 17:54 result.tar.gz
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc       666 Mar 21 17:54 wpNNDmMHhL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmr0qLDmDw5fUm.diag
[2026-03-21 17:54:42] -rw-r--r--. 1 boinc boinc      9205 Mar 21 17:54 runtime_log.err
[2026-03-21 17:54:42] -rw-r--r--. 1 boinc boinc     21180 Mar 21 17:54 stderr.txt
[2026-03-21 17:54:42] HITS file was successfully produced:
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc 203820132 Mar 21 17:53 shared/HITS.pool.root.1
[2026-03-21 17:54:42]  *** Contents of shared directory: ***
[2026-03-21 17:54:42] total 412688
[2026-03-21 17:54:42] -rw-r--r--. 2 boinc boinc 216076475 Mar 21 14:29 ATLAS.root_0
[2026-03-21 17:54:42] -rw-r--r--. 2 boinc boinc     15845 Mar 21 14:29 start_atlas.sh
[2026-03-21 17:54:42] -rw-r--r--. 2 boinc boinc    597522 Mar 21 14:29 input.tar.gz
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc 203820132 Mar 21 17:53 HITS.pool.root.1
[2026-03-21 17:54:42] -rw-------. 1 boinc boinc   2068480 Mar 21 17:54 result.tar.gz
17:54:44 (3730962): run_atlas exited; CPU time 46891.287690
17:54:44 (3730962): called boinc_finish(0)

</stderr_txt>
]]>

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