Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:33:18 (386586): wrapper (7.7.26015): starting
17:33:18 (386586): wrapper: running run_atlas (--nthreads 10)
[2026-03-14 17:33:18] Arguments: --nthreads 10
[2026-03-14 17:33:18] Threads: 10
[2026-03-14 17:33:18] Checking for CVMFS
[2026-03-14 17:33:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 17:33:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 17:33:20] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 17:33:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 17:33:41] 2.13.3.0 247178 37429 228436 157290 1 98 40806899 40960000 24428 16776704 0 62967979 99.697 43343034 33778 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-14 17:33:41] CVMFS is ok
[2026-03-14 17:33:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 17:33:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 17:33:41] Further information can be found at the LHC@home message board.
[2026-03-14 17:33:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 17:33:41] Checking for apptainer binary...
[2026-03-14 17:33:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 17:33:41] Running /usr/bin/apptainer --version
[2026-03-14 17:33:41] apptainer version 1.4.5-2.el9
[2026-03-14 17:33:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 17:33:42] c6-6-39-1.aglt2.org
[2026-03-14 17:33:42] apptainer works
[2026-03-14 17:33:42] Set ATHENA_PROC_NUMBER=10
[2026-03-14 17:33:42] Set ATHENA_CORE_NUMBER=10
[2026-03-14 17:33:42] Starting ATLAS job with PandaID=7055031635
[2026-03-14 17:33:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:46:24 (939913): wrapper (7.7.26015): starting
20:46:24 (939913): wrapper: running run_atlas (--nthreads 8)
[2026-03-14 20:46:24] Arguments: --nthreads 8
[2026-03-14 20:46:24] Threads: 8
[2026-03-14 20:46:24] This job has been restarted, cleaning up previous attempt
[2026-03-14 20:46:24] Checking for CVMFS
[2026-03-14 20:46:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 20:46:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 20:46:24] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 20:46:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 20:46:25] 2.13.3.0 247178 37622 241656 157296 1 493 21812219 40960001 21099 16776704 0 63457844 99.699 43434745 33779 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-14 20:46:25] CVMFS is ok
[2026-03-14 20:46:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 20:46:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 20:46:25] Further information can be found at the LHC@home message board.
[2026-03-14 20:46:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 20:46:25] Checking for apptainer binary...
[2026-03-14 20:46:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 20:46:25] Running /usr/bin/apptainer --version
[2026-03-14 20:46:25] apptainer version 1.4.5-2.el9
[2026-03-14 20:46:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 20:46:25] c6-6-39-1.aglt2.org
[2026-03-14 20:46:25] apptainer works
[2026-03-14 20:46:25] Set ATHENA_PROC_NUMBER=8
[2026-03-14 20:46:25] Set ATHENA_CORE_NUMBER=8
[2026-03-14 20:46:25] Starting ATLAS job with PandaID=7055031635
[2026-03-14 20:46:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 02:25:32]  *** The last 200 lines of the pilot log: ***
[2026-03-15 02:25:32] 2026-03-15 06:24:55,982 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-15 02:25:32] 2026-03-15 06:24:56,269 | INFO     | time since job start (20294s) is within the limit (345600.0s)
[2026-03-15 02:25:32] 2026-03-15 06:24:57,184 | INFO     | job 7055031635 has state=finished
[2026-03-15 02:25:32] 2026-03-15 06:24:57,185 | INFO     | preparing for final server update for job 7055031635 in state='finished'
[2026-03-15 02:25:32] 2026-03-15 06:24:57,186 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7055031635/jobReport.json
[2026-03-15 02:25:32] 2026-03-15 06:24:57,188 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-15 02:25:32] 2026-03-15 06:24:57,188 | INFO     | this job has now completed (state=finished)
[2026-03-15 02:25:32] 2026-03-15 06:24:57,188 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 02:25:32] 2026-03-15 06:24:57,188 | INFO     | log transfer has been attempted: DONE
[2026-03-15 02:25:32] 2026-03-15 06:24:57,188 | INFO     | job 7055031635 has finished - writing final server update
[2026-03-15 02:25:32] 2026-03-15 06:24:57,189 | INFO     | total number of processed events: 400 (read)
[2026-03-15 02:25:32] 2026-03-15 06:24:57,204 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7055031635/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 02:25:32] 2026-03-15 06:24:57,205 | INFO     | extracted standard info from prmon json
[2026-03-15 02:25:32] 2026-03-15 06:24:57,205 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 02:25:32] 2026-03-15 06:24:57,205 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 02:25:32] 2026-03-15 06:24:57,206 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 02:25:32] 2026-03-15 06:24:57,206 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 02:25:32] 2026-03-15 06:24:57,214 | INFO     | fitting pss+swap vs Time
[2026-03-15 02:25:32] 2026-03-15 06:24:57,214 | INFO     | sum of square deviations: 11347109722.635548
[2026-03-15 02:25:32] 2026-03-15 06:24:57,217 | INFO     | sum of deviations: 51604091711.68373
[2026-03-15 02:25:32] 2026-03-15 06:24:57,255 | INFO     | mean x: 1773545729.5331326
[2026-03-15 02:25:32] 2026-03-15 06:24:57,256 | INFO     | mean y: 2513301.256024096
[2026-03-15 02:25:32] 2026-03-15 06:24:57,256 | INFO     | intersect: -8063172033.496806
[2026-03-15 02:25:32] 2026-03-15 06:24:57,256 | INFO     | chi2: 1.2838755923536724
[2026-03-15 02:25:32] 2026-03-15 06:24:57,257 | INFO     | sum of square deviations: 10842117562.630014
[2026-03-15 02:25:32] 2026-03-15 06:24:57,294 | INFO     | sum of deviations: 50067897428.50153
[2026-03-15 02:25:32] 2026-03-15 06:24:57,295 | INFO     | mean x: 1773545577.0336392
[2026-03-15 02:25:32] 2026-03-15 06:24:57,295 | INFO     | mean y: 2512837.3180428133
[2026-03-15 02:25:32] 2026-03-15 06:24:57,295 | INFO     | intersect: -8187556816.764624
[2026-03-15 02:25:32] 2026-03-15 06:24:57,295 | INFO     | chi2: 1.284149476717235
[2026-03-15 02:25:32] 2026-03-15 06:24:57,296 | INFO     | current chi2=1.284149476717235 (change=-0.02133262484260417 %)
[2026-03-15 02:25:32] 2026-03-15 06:24:57,296 | INFO     | right removable region: 326
[2026-03-15 02:25:32] 2026-03-15 06:24:57,296 | INFO     | sum of square deviations: 10842110852.630013
[2026-03-15 02:25:32] 2026-03-15 06:24:57,308 | INFO     | sum of deviations: 4529204622.984714
[2026-03-15 02:25:32] 2026-03-15 06:24:57,308 | INFO     | mean x: 1773545882.0336392
[2026-03-15 02:25:32] 2026-03-15 06:24:57,308 | INFO     | mean y: 2527419.8195718653
[2026-03-15 02:25:32] 2026-03-15 06:24:57,309 | INFO     | intersect: -738357110.6160973
[2026-03-15 02:25:32] 2026-03-15 06:24:57,309 | INFO     | chi2: 0.019524334372378768
[2026-03-15 02:25:32] 2026-03-15 06:24:57,309 | INFO     | current chi2=0.019524334372378768 (change=98.47926586589392 %)
[2026-03-15 02:25:32] 2026-03-15 06:24:57,310 | INFO     | sum of square deviations: 10352321570.124268
[2026-03-15 02:25:32] 2026-03-15 06:24:57,351 | INFO     | sum of deviations: 5378312908.776397
[2026-03-15 02:25:32] 2026-03-15 06:24:57,352 | INFO     | mean x: 1773546034.5341616
[2026-03-15 02:25:32] 2026-03-15 06:24:57,352 | INFO     | mean y: 2527153.8385093166
[2026-03-15 02:25:32] 2026-03-15 06:24:57,352 | INFO     | intersect: -918878297.8016264
[2026-03-15 02:25:32] 2026-03-15 06:24:57,353 | INFO     | chi2: 0.019055848177655772
[2026-03-15 02:25:32] 2026-03-15 06:24:57,353 | INFO     | current chi2=0.019055848177655772 (change=2.3994989318855677 %)
[2026-03-15 02:25:32] 2026-03-15 06:24:57,353 | INFO     | left removable region: 20
[2026-03-15 02:25:32] 2026-03-15 06:24:57,377 | INFO     | sum of square deviations: 8884522428.173223
[2026-03-15 02:25:32] 2026-03-15 06:24:57,380 | INFO     | sum of deviations: 9654017494.405226
[2026-03-15 02:25:32] 2026-03-15 06:24:57,380 | INFO     | mean x: 1773546156.5326798
[2026-03-15 02:25:32] 2026-03-15 06:24:57,381 | INFO     | mean y: 2525058.359477124
[2026-03-15 02:25:32] 2026-03-15 06:24:57,381 | INFO     | intersect: -1924629244.049338
[2026-03-15 02:25:32] 2026-03-15 06:24:57,436 | INFO     | chi2: 0.012767542352818392
[2026-03-15 02:25:32] 2026-03-15 06:24:57,437 | INFO     | current memory leak: 1.09 B/s (using 306 data points, chi2=0.01)
[2026-03-15 02:25:32] 2026-03-15 06:24:57,437 | INFO     | could have reported an average CPU frequency of 3067 MHz (15 samples)
[2026-03-15 02:25:32] 2026-03-15 06:24:57,438 | INFO     | ..............................
[2026-03-15 02:25:32] 2026-03-15 06:24:57,438 | INFO     | . Timing measurements:
[2026-03-15 02:25:32] 2026-03-15 06:24:57,438 | INFO     | . get job = 0 s
[2026-03-15 02:25:32] 2026-03-15 06:24:57,438 | INFO     | . initial setup = 2 s
[2026-03-15 02:25:32] 2026-03-15 06:24:57,438 | INFO     | . payload setup = 9 s
[2026-03-15 02:25:32] 2026-03-15 06:24:57,438 | INFO     | . stage-in = 0 s
[2026-03-15 02:25:32] 2026-03-15 06:24:57,438 | INFO     | . payload execution = 20257 s
[2026-03-15 02:25:32] 2026-03-15 06:24:57,438 | INFO     | . stage-out = 3 s
[2026-03-15 02:25:32] 2026-03-15 06:24:57,438 | INFO     | . log creation = 0 s
[2026-03-15 02:25:32] 2026-03-15 06:24:57,438 | INFO     | ..............................
[2026-03-15 02:25:32] 2026-03-15 06:24:57,624 | INFO     | 
[2026-03-15 02:25:32] 2026-03-15 06:24:57,624 | INFO     | job summary report
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | --------------------------------------------------
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | PanDA job id: 7055031635
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | task id: 48967011
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | errors: (none)
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | pilot state: finished 
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | transexitcode: 0
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | exeerrorcode: 0
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | exeerrordiag: 
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | exitcode: 0
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | exitmsg: OK
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | cpuconsumptiontime: 50130 s
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | nevents: 400
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | neventsw: 0
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | pid: 959731
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | pgrp: 959731
[2026-03-15 02:25:32] 2026-03-15 06:24:57,625 | INFO     | corecount: 8
[2026-03-15 02:25:32] 2026-03-15 06:24:57,626 | INFO     | event service: False
[2026-03-15 02:25:32] 2026-03-15 06:24:57,626 | INFO     | sizes: {0: 2280243, 11: 2280243, 20271: 2313527, 20272: 2313526, 20276: 2322580, 20280: 2322636, 20283: 2322958}
[2026-03-15 02:25:32] 2026-03-15 06:24:57,626 | INFO     | --------------------------------------------------
[2026-03-15 02:25:32] 2026-03-15 06:24:57,626 | INFO     | 
[2026-03-15 02:25:32] 2026-03-15 06:24:57,626 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-15 02:25:32] 2026-03-15 06:24:57,669 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,670 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,670 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,670 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,670 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,670 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,670 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,670 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,670 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,670 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,670 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,670 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,671 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,671 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,671 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,671 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,671 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,671 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 02:25:32] 2026-03-15 06:24:57,671 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,671 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 02:25:32] 2026-03-15 06:24:57,671 | INFO     | job 7055031635 has completed (purged errors)
[2026-03-15 02:25:32] 2026-03-15 06:24:57,671 | INFO     | overall cleanup function is called
[2026-03-15 02:25:32] 2026-03-15 06:24:58,684 | INFO     | --- collectZombieJob: --- 10, [959731]
[2026-03-15 02:25:32] 2026-03-15 06:24:58,684 | INFO     | zombie collector waiting for pid 959731
[2026-03-15 02:25:32] 2026-03-15 06:24:58,684 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 02:25:32] 2026-03-15 06:24:58,684 | INFO     | collected zombie processes
[2026-03-15 02:25:32] 2026-03-15 06:24:58,685 | INFO     | will attempt to kill all subprocesses of pid=959731
[2026-03-15 02:25:32] 2026-03-15 06:24:59,857 | INFO     | process IDs to be killed: [959731] (in reverse order)
[2026-03-15 02:25:32] 2026-03-15 06:25:00,375 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 02:25:32] 2026-03-15 06:25:00,375 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 02:25:32] 2026-03-15 06:25:00,390 | INFO     | did not find any defunct processes belonging to 959731
[2026-03-15 02:25:32] 2026-03-15 06:25:00,404 | INFO     | did not find any defunct processes belonging to 959731
[2026-03-15 02:25:32] 2026-03-15 06:25:00,405 | INFO     | ready for new job
[2026-03-15 02:25:32] 2026-03-15 06:25:00,405 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 02:25:32] 2026-03-15 06:25:00,407 | INFO     | **************************************
[2026-03-15 02:25:32] 2026-03-15 06:25:00,407 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 02:25:32] 2026-03-15 06:25:00,408 | INFO     | **************************************
[2026-03-15 02:25:32] 2026-03-15 06:25:00,408 | INFO     | 
[2026-03-15 02:25:32] 2026-03-15 06:25:00,411 | INFO     | architecture information:
[2026-03-15 02:25:32] 2026-03-15 06:25:00,411 | INFO     | executing command: cat /etc/os-release
[2026-03-15 02:25:32] 2026-03-15 06:25:00,488 | INFO     | cat /etc/os-release:
[2026-03-15 02:25:32] NAME="CentOS Linux"
[2026-03-15 02:25:32] VERSION="7 (Core)"
[2026-03-15 02:25:32] ID="centos"
[2026-03-15 02:25:32] ID_LIKE="rhel fedora"
[2026-03-15 02:25:32] VERSION_ID="7"
[2026-03-15 02:25:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 02:25:32] ANSI_COLOR="0;31"
[2026-03-15 02:25:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 02:25:32] HOME_URL="https://www.centos.org/"
[2026-03-15 02:25:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 02:25:32] 
[2026-03-15 02:25:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 02:25:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 02:25:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 02:25:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 02:25:32] 
[2026-03-15 02:25:32] 2026-03-15 06:25:00,489 | INFO     | **************************************
[2026-03-15 02:25:32] 2026-03-15 06:25:00,991 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-15 02:25:32] 2026-03-15 06:25:01,049 | INFO     | sufficient remaining disk space (74474061824 B)
[2026-03-15 02:25:32] 2026-03-15 06:25:01,050 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 02:25:32] 2026-03-15 06:25:01,050 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 02:25:32] 2026-03-15 06:25:01,050 | INFO     | update_server=False
[2026-03-15 02:25:32] 2026-03-15 06:25:01,050 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 02:25:32] 2026-03-15 06:25:01,050 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 02:25:32] 2026-03-15 06:25:01,061 | INFO     | all job control threads have been joined
[2026-03-15 02:25:32] 2026-03-15 06:25:01,082 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 02:25:32] 2026-03-15 06:25:01,885 | INFO     | all payload control threads have been joined
[2026-03-15 02:25:32] 2026-03-15 06:25:02,009 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 02:25:32] 2026-03-15 06:25:02,009 | INFO     | aborting loop
[2026-03-15 02:25:32] 2026-03-15 06:25:02,058 | INFO     | [job] retrieve thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:02,072 | INFO     | [job] control thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:02,101 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:02,125 | INFO     | all data control threads have been joined
[2026-03-15 02:25:32] 2026-03-15 06:25:02,170 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:02,642 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 02:25:32] 2026-03-15 06:25:02,644 | INFO     | [payload] failed_post thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:02,913 | INFO     | [payload] control thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:02,976 | INFO     | [data] copytool_in thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:03,015 | INFO     | [job] job monitor thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:03,089 | INFO     | [data] copytool_out thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:03,090 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:03,126 | INFO     | [job] validate thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:03,176 | INFO     | [data] control thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:03,323 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:03,421 | INFO     | [payload] validate_post thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:03,648 | INFO     | [job] queue monitor thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:05,068 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 02:25:32] 2026-03-15 06:25:19,155 | INFO     | [monitor] cgroup control has ended
[2026-03-15 02:25:32] 2026-03-15 06:25:20,957 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140409625073472)>', '<ExcThread(monitor, started 140409149826816)>']
[2026-03-15 02:25:32] 2026-03-15 06:25:25,987 | INFO     | all workflow threads have been joined
[2026-03-15 02:25:32] 2026-03-15 06:25:25,988 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 02:25:32] 2026-03-15 06:25:25,989 | INFO     | traces error code: 0
[2026-03-15 02:25:32] 2026-03-15 06:25:25,989 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 02:25:32] 2026-03-15 06:25:30,477 | INFO     | PID=951017 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 02:25:32] 2026-03-15 06:25:30,477 | INFO     | .. there are 37 such processes running
[2026-03-15 02:25:32] 2026-03-15 06:25:30,477 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 02:25:32] 2026-03-15 06:25:30,477 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 02:25:32] 2026-03-15 06:25:30,477 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 02:25:32] 2026-03-15 06:25:30,477 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 02:25:32] 2026-03-15 06:25:30,477 | INFO     | [monitor] control thread has ended
[2026-03-15 02:25:32] 2026-03-15 06:25:31,168 [wrapper] ==== pilot stdout END ====
[2026-03-15 02:25:32] 2026-03-15 06:25:31,185 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 02:25:32] 2026-03-15 06:25:31,199 [wrapper] pilotpid: 951017
[2026-03-15 02:25:32] 2026-03-15 06:25:31,218 [wrapper] Pilot exit status: 0
[2026-03-15 02:25:32] 2026-03-15 06:25:31,247 [wrapper] pandaids: 7055031635 7055031635
[2026-03-15 02:25:32] 2026-03-15 06:25:31,499 [wrapper] cleanup supervisor_pilot 1725469 951018
[2026-03-15 02:25:32] 2026-03-15 06:25:31,538 [wrapper] Test setup, not cleaning
[2026-03-15 02:25:32] 2026-03-15 06:25:31,574 [wrapper] apfmon messages muted
[2026-03-15 02:25:32] 2026-03-15 06:25:31,600 [wrapper] ==== wrapper stdout END ====
[2026-03-15 02:25:32] 2026-03-15 06:25:31,618 [wrapper] ==== wrapper stderr END ====
[2026-03-15 02:25:32]  *** Error codes and diagnostics ***
[2026-03-15 02:25:32]     "exeErrorCode": 0,
[2026-03-15 02:25:32]     "exeErrorDiag": "",
[2026-03-15 02:25:32]     "pilotErrorCode": 0,
[2026-03-15 02:25:32]     "pilotErrorDiag": "",
[2026-03-15 02:25:32]  *** Listing of results directory ***
[2026-03-15 02:25:32] total 641504
[2026-03-15 02:25:32] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-15 02:25:32] -rw-r--r--. 1 boincer umatlas    585013 Mar 14 12:40 pilot3.tar.gz
[2026-03-15 02:25:32] -rwx------. 1 boincer umatlas     36322 Mar 14 12:44 runpilot2-wrapper.sh
[2026-03-15 02:25:32] -rw-r--r--. 1 boincer umatlas      5111 Mar 14 12:46 queuedata.json
[2026-03-15 02:25:32] -rw-r--r--. 1 boincer umatlas       100 Mar 14 17:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 02:25:32] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 14 17:33 run_atlas
[2026-03-15 02:25:32] -rw-r--r--. 1 boincer umatlas       105 Mar 14 17:33 job.xml
[2026-03-15 02:25:32] -rw-r--r--. 3 boincer umatlas 218881221 Mar 14 17:33 EVNT.48967008._000561.pool.root.1
[2026-03-15 02:25:32] -rw-r--r--. 3 boincer umatlas 218881221 Mar 14 17:33 ATLAS.root_0
[2026-03-15 02:25:32] drwxrwx--x. 2 boincer umatlas      4096 Mar 14 17:33 shared
[2026-03-15 02:25:32] -rw-r--r--. 2 boincer umatlas    597525 Mar 14 17:33 input.tar.gz
[2026-03-15 02:25:32] -rw-r--r--. 2 boincer umatlas     15845 Mar 14 17:33 start_atlas.sh
[2026-03-15 02:25:32] -rw-r--r--. 1 boincer umatlas         0 Mar 14 17:33 boinc_lockfile
[2026-03-15 02:25:32] -rw-r--r--. 1 boincer umatlas      2564 Mar 14 20:46 pandaJob.out
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas        57 Mar 14 20:46 setup.sh.local
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas   1006481 Mar 14 20:46 agis_schedconf.cvmfs.json
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas       441 Mar 14 20:46 workernode_map.json
[2026-03-15 02:25:32] -rw-r--r--. 1 boincer umatlas      6841 Mar 15 02:19 init_data.xml
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas 209093564 Mar 15 02:23 HITS.48967011._014581.pool.root.1
[2026-03-15 02:25:32] -rw-r--r--. 1 boincer umatlas       530 Mar 15 02:24 boinc_task_state.xml
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas        96 Mar 15 02:24 pilot_heartbeat.json
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas      1040 Mar 15 02:24 memory_monitor_summary.json
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas   1511579 Mar 15 02:24 agis_ddmendpoints.agis.ALL.json
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas    522368 Mar 15 02:24 log.48967011._014581.job.log.tgz.1
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas      6387 Mar 15 02:24 heartbeat.json
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas       822 Mar 15 02:25 pilotlog.txt
[2026-03-15 02:25:32] -rw-r--r--. 1 boincer umatlas      8192 Mar 15 02:25 boinc_mmap_file
[2026-03-15 02:25:32] -rw-r--r--. 1 boincer umatlas        28 Mar 15 02:25 wrapper_checkpoint.txt
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas   2531867 Mar 15 02:25 log.48967011._014581.job.log.1
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas       357 Mar 15 02:25 output.list
[2026-03-15 02:25:32] -rw-r--r--. 1 boincer umatlas       620 Mar 15 02:25 runtime_log
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas   3072000 Mar 15 02:25 result.tar.gz
[2026-03-15 02:25:32] -rw-r--r--. 1 boincer umatlas      9432 Mar 15 02:25 runtime_log.err
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas       781 Mar 15 02:25 q2zMDm3GhL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmixqLDmdDkMnn.diag
[2026-03-15 02:25:32] -rw-r--r--. 1 boincer umatlas     23524 Mar 15 02:25 stderr.txt
[2026-03-15 02:25:32] HITS file was successfully produced:
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas 209093564 Mar 15 02:23 shared/HITS.pool.root.1
[2026-03-15 02:25:32]  *** Contents of shared directory: ***
[2026-03-15 02:25:32] total 421552
[2026-03-15 02:25:32] -rw-r--r--. 3 boincer umatlas 218881221 Mar 14 17:33 ATLAS.root_0
[2026-03-15 02:25:32] -rw-r--r--. 2 boincer umatlas    597525 Mar 14 17:33 input.tar.gz
[2026-03-15 02:25:32] -rw-r--r--. 2 boincer umatlas     15845 Mar 14 17:33 start_atlas.sh
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas 209093564 Mar 15 02:23 HITS.pool.root.1
[2026-03-15 02:25:32] -rw-------. 1 boincer umatlas   3072000 Mar 15 02:25 result.tar.gz
02:25:33 (939913): run_atlas exited; CPU time 50902.148811
02:25:33 (939913): called boinc_finish(0)

</stderr_txt>
]]>

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