Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:27:28 (2780326): wrapper (7.7.26015): starting
03:27:28 (2780326): wrapper: running run_atlas (--nthreads 2)
[2026-03-15 03:27:28] Arguments: --nthreads 2
[2026-03-15 03:27:28] Threads: 2
[2026-03-15 03:27:28] Checking for CVMFS
[2026-03-15 03:27:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 03:27:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 03:27:28] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 03:27:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 03:27:28] 2.9.2.0 2369423 3981 59012 157298 2 50 30935768 36864000 0 130560 0 1139644 99.977 151241 13466 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 03:27:28] CVMFS is ok
[2026-03-15 03:27:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 03:27:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 03:27:28] Further information can be found at the LHC@home message board.
[2026-03-15 03:27:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 03:27:28] Checking for apptainer binary...
[2026-03-15 03:27:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 03:27:28] Running /usr/bin/apptainer --version
[2026-03-15 03:27:28] apptainer version 1.4.1-1.1
[2026-03-15 03:27:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 03:27:28] thA310
[2026-03-15 03:27:28] apptainer works
[2026-03-15 03:27:28] Set ATHENA_PROC_NUMBER=2
[2026-03-15 03:27:28] Set ATHENA_CORE_NUMBER=2
[2026-03-15 03:27:28] Starting ATLAS job with PandaID=7046600763
[2026-03-15 03:27:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 05:27:10]  *** The last 200 lines of the pilot log: ***
[2026-03-15 05:27:10] 2026-03-15 04:26:38,564 | INFO     | --- collectZombieJob: --- 10, [2788772]
[2026-03-15 05:27:10] 2026-03-15 04:26:38,564 | INFO     | zombie collector waiting for pid 2788772
[2026-03-15 05:27:10] 2026-03-15 04:26:38,565 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 05:27:10] 2026-03-15 04:26:38,565 | INFO     | collected zombie processes
[2026-03-15 05:27:10] 2026-03-15 04:26:38,565 | INFO     | will attempt to kill all subprocesses of pid=2788772
[2026-03-15 05:27:10] 2026-03-15 04:26:38,605 | INFO     | process IDs to be killed: [2788772] (in reverse order)
[2026-03-15 05:27:10] 2026-03-15 04:26:38,628 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 05:27:10] 2026-03-15 04:26:38,628 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 05:27:10] 2026-03-15 04:26:38,629 | INFO     | did not find any defunct processes belonging to 2788772
[2026-03-15 05:27:10] 2026-03-15 04:26:38,630 | INFO     | did not find any defunct processes belonging to 2788772
[2026-03-15 05:27:10] 2026-03-15 04:26:38,630 | INFO     | ready for new job
[2026-03-15 05:27:10] 2026-03-15 04:26:38,630 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 05:27:10] 2026-03-15 04:26:38,630 | INFO     | **************************************
[2026-03-15 05:27:10] 2026-03-15 04:26:38,630 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 05:27:10] 2026-03-15 04:26:38,631 | INFO     | **************************************
[2026-03-15 05:27:10] 2026-03-15 04:26:38,631 | INFO     | 
[2026-03-15 05:27:10] 2026-03-15 04:26:38,631 | INFO     | architecture information:
[2026-03-15 05:27:10] 2026-03-15 04:26:38,631 | INFO     | executing command: cat /etc/os-release
[2026-03-15 05:27:10] 2026-03-15 04:26:38,641 | INFO     | cat /etc/os-release:
[2026-03-15 05:27:10] NAME="CentOS Linux"
[2026-03-15 05:27:10] VERSION="7 (Core)"
[2026-03-15 05:27:10] ID="centos"
[2026-03-15 05:27:10] ID_LIKE="rhel fedora"
[2026-03-15 05:27:10] VERSION_ID="7"
[2026-03-15 05:27:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 05:27:10] ANSI_COLOR="0;31"
[2026-03-15 05:27:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 05:27:10] HOME_URL="https://www.centos.org/"
[2026-03-15 05:27:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 05:27:10] 
[2026-03-15 05:27:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 05:27:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 05:27:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 05:27:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 05:27:10] 
[2026-03-15 05:27:10] 2026-03-15 04:26:38,641 | INFO     | **************************************
[2026-03-15 05:27:10] 2026-03-15 04:26:39,144 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 05:27:10] 2026-03-15 04:26:39,158 | INFO     | sufficient remaining disk space (492354666496 B)
[2026-03-15 05:27:10] 2026-03-15 04:26:39,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 05:27:10] 2026-03-15 04:26:39,159 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 05:27:10] 2026-03-15 04:26:39,159 | INFO     | update_server=False
[2026-03-15 05:27:10] 2026-03-15 04:26:39,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 05:27:10] 2026-03-15 04:26:39,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 05:27:10] 2026-03-15 04:26:39,159 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 05:27:10] 2026-03-15 04:26:39,159 | INFO     | aborting loop
[2026-03-15 05:27:10] 2026-03-15 04:26:39,644 | INFO     | all payload control threads have been joined
[2026-03-15 05:27:10] 2026-03-15 04:26:39,656 | INFO     | all data control threads have been joined
[2026-03-15 05:27:10] 2026-03-15 04:26:39,693 | INFO     | all job control threads have been joined
[2026-03-15 05:27:10] 2026-03-15 04:26:40,165 | INFO     | [job] retrieve thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:40,165 | INFO     | [job] job monitor thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:40,175 | INFO     | [data] copytool_in thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:40,178 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:40,280 | INFO     | [payload] validate_post thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:40,641 | INFO     | [payload] failed_post thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:40,649 | INFO     | [payload] control thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:40,661 | INFO     | [data] control thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:40,698 | INFO     | [job] control thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:41,165 | INFO     | [data] copytool_out thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:41,458 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:41,585 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:41,594 | INFO     | [job] validate thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:41,840 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 05:27:10] 2026-03-15 04:26:42,151 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 05:27:10] 2026-03-15 04:26:43,157 | INFO     | [job] queue monitor thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:45,846 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:49,878 | INFO     | job.realtimelogging is not enabled
[2026-03-15 05:27:10] 2026-03-15 04:26:50,883 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 05:27:10] 2026-03-15 04:26:59,456 | INFO     | [monitor] cgroup control has ended
[2026-03-15 05:27:10] 2026-03-15 04:26:59,598 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139932743554880)>', '<ExcThread(monitor, started 139931947087616)>']
[2026-03-15 05:27:10] 2026-03-15 04:27:04,623 | INFO     | all workflow threads have been joined
[2026-03-15 05:27:10] 2026-03-15 04:27:04,624 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 05:27:10] 2026-03-15 04:27:04,625 | INFO     | traces error code: 0
[2026-03-15 05:27:10] 2026-03-15 04:27:04,626 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 05:27:10] 2026-03-15 04:27:10,120 | INFO     | PID=2784356 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 05:27:10] 2026-03-15 04:27:10,120 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 05:27:10] 2026-03-15 04:27:10,120 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 05:27:10] 2026-03-15 04:27:10,120 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 05:27:10] 2026-03-15 04:27:10,120 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 05:27:10] 2026-03-15 04:27:10,120 | CRITICAL | thread 'MainThread' is not alive
[2026-03-15 05:27:10] 2026-03-15 04:27:10,120 | INFO     | [monitor] control thread has ended
[2026-03-15 05:27:10] 2026-03-15 04:27:10,160 [wrapper] ==== pilot stdout END ====
[2026-03-15 05:27:10] 2026-03-15 04:27:10,163 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 05:27:10] 2026-03-15 04:27:10,166 [wrapper] pilotpid: 2784356
[2026-03-15 05:27:10] 2026-03-15 04:27:10,169 [wrapper] Pilot exit status: 0
[2026-03-15 05:27:10] 2026-03-15 04:27:10,176 [wrapper] pandaids: 7046600763
[2026-03-15 05:27:10] 2026-03-15 04:27:10,189 [wrapper] cleanup supervisor_pilot 2794988 2784357
[2026-03-15 05:27:10] 2026-03-15 04:27:10,191 [wrapper] Test setup, not cleaning
[2026-03-15 05:27:10] 2026-03-15 04:27:10,193 [wrapper] apfmon messages muted
[2026-03-15 05:27:10] 2026-03-15 04:27:10,195 [wrapper] ==== wrapper stdout END ====
[2026-03-15 05:27:10] 2026-03-15 04:27:10,198 [wrapper] ==== wrapper stderr END ====
[2026-03-15 05:27:10]  *** Error codes and diagnostics ***
[2026-03-15 05:27:10]     "exeErrorCode": 0,
[2026-03-15 05:27:10]     "exeErrorDiag": "",
[2026-03-15 05:27:10]     "pilotErrorCode": 0,
[2026-03-15 05:27:10]     "pilotErrorDiag": "",
[2026-03-15 05:27:10]  *** Listing of results directory ***
[2026-03-15 05:27:10] total 614500
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc    585013 Mar 14 10:56 pilot3.tar.gz
[2026-03-15 05:27:10] -rwx------ 1 boinc boinc     36322 Mar 14 11:01 runpilot2-wrapper.sh
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc      5111 Mar 14 11:01 queuedata.json
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc       100 Mar 15 03:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 05:27:10] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 03:27 run_atlas
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc       105 Mar 15 03:27 job.xml
[2026-03-15 05:27:10] -rw-r--r-- 2 boinc boinc 437937034 Mar 15 03:27 EVNT.46701403._001880.pool.root.1
[2026-03-15 05:27:10] -rw-r--r-- 2 boinc boinc    597539 Mar 15 03:27 input.tar.gz
[2026-03-15 05:27:10] -rw-r--r-- 2 boinc boinc     15845 Mar 15 03:27 start_atlas.sh
[2026-03-15 05:27:10] drwxrwx--x 2 boinc boinc      4096 Mar 15 03:27 shared
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc         0 Mar 15 03:27 boinc_setup_complete
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc      6205 Mar 15 03:27 init_data.xml
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc         0 Mar 15 03:27 boinc_lockfile
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc      2562 Mar 15 03:27 pandaJob.out
[2026-03-15 05:27:10] -rw------- 1 boinc boinc   1006481 Mar 15 03:27 agis_schedconf.cvmfs.json
[2026-03-15 05:27:10] -rw------- 1 boinc boinc   1511579 Mar 15 03:27 agis_ddmendpoints.agis.ALL.json
[2026-03-15 05:27:10] -rw------- 1 boinc boinc       418 Mar 15 03:27 workernode_map.json
[2026-03-15 05:27:10] drwx------ 5 boinc boinc      4096 Mar 15 03:27 pilot3
[2026-03-15 05:27:10] -rw------- 1 boinc boinc 184826298 Mar 15 05:26 HITS.48955010._042951.pool.root.1
[2026-03-15 05:27:10] -rw------- 1 boinc boinc        95 Mar 15 05:26 pilot_heartbeat.json
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc       530 Mar 15 05:26 boinc_task_state.xml
[2026-03-15 05:27:10] -rw------- 1 boinc boinc      1016 Mar 15 05:26 memory_monitor_summary.json
[2026-03-15 05:27:10] -rw------- 1 boinc boinc    254913 Mar 15 05:26 log.48955010._042951.job.log.tgz.1
[2026-03-15 05:27:10] -rw------- 1 boinc boinc      6301 Mar 15 05:26 heartbeat.json
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc        27 Mar 15 05:26 wrapper_checkpoint.txt
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc      8192 Mar 15 05:26 boinc_mmap_file
[2026-03-15 05:27:10] -rw------- 1 boinc boinc       817 Mar 15 05:27 pilotlog.txt
[2026-03-15 05:27:10] -rw------- 1 boinc boinc   1023911 Mar 15 05:27 log.48955010._042951.job.log.1
[2026-03-15 05:27:10] -rw------- 1 boinc boinc       357 Mar 15 05:27 output.list
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc       620 Mar 15 05:27 runtime_log
[2026-03-15 05:27:10] -rw------- 1 boinc boinc   1300480 Mar 15 05:27 result.tar.gz
[2026-03-15 05:27:10] -rw------- 1 boinc boinc       657 Mar 15 05:27 ZlaKDm2yaL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmBDqLDmpGBgUm.diag
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc      8896 Mar 15 05:27 runtime_log.err
[2026-03-15 05:27:10] -rw-r--r-- 1 boinc boinc     10797 Mar 15 05:27 stderr.txt
[2026-03-15 05:27:10] HITS file was successfully produced:
[2026-03-15 05:27:10] -rw------- 1 boinc boinc 184826298 Mar 15 05:26 shared/HITS.pool.root.1
[2026-03-15 05:27:10]  *** Contents of shared directory: ***
[2026-03-15 05:27:10] total 610052
[2026-03-15 05:27:10] -rw-r--r-- 2 boinc boinc 437937034 Mar 15 03:27 ATLAS.root_0
[2026-03-15 05:27:10] -rw-r--r-- 2 boinc boinc    597539 Mar 15 03:27 input.tar.gz
[2026-03-15 05:27:10] -rw-r--r-- 2 boinc boinc     15845 Mar 15 03:27 start_atlas.sh
[2026-03-15 05:27:10] -rw------- 1 boinc boinc 184826298 Mar 15 05:26 HITS.pool.root.1
[2026-03-15 05:27:10] -rw------- 1 boinc boinc   1300480 Mar 15 05:27 result.tar.gz
05:27:12 (2780326): run_atlas exited; CPU time 13680.305483
05:27:12 (2780326): called boinc_finish(0)

</stderr_txt>
]]>

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