Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:27:18 (2795316): wrapper (7.7.26015): starting
05:27:18 (2795316): wrapper: running run_atlas (--nthreads 2)
[2026-03-15 05:27:18] Arguments: --nthreads 2
[2026-03-15 05:27:18] Threads: 2
[2026-03-15 05:27:18] Checking for CVMFS
[2026-03-15 05:27:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 05:27:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 05:27:18] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 05:27:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 05:27:19] 2.9.2.0 2369423 4101 58932 157302 2 49 30949506 36864000 0 130560 0 1180166 99.977 156348 13693 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 05:27:19] CVMFS is ok
[2026-03-15 05:27:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 05:27:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 05:27:19] Further information can be found at the LHC@home message board.
[2026-03-15 05:27:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 05:27:19] Checking for apptainer binary...
[2026-03-15 05:27:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 05:27:19] Running /usr/bin/apptainer --version
[2026-03-15 05:27:19] apptainer version 1.4.1-1.1
[2026-03-15 05:27:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 05:27:19] thA310
[2026-03-15 05:27:19] apptainer works
[2026-03-15 05:27:19] Set ATHENA_PROC_NUMBER=2
[2026-03-15 05:27:19] Set ATHENA_CORE_NUMBER=2
[2026-03-15 05:27:19] Starting ATLAS job with PandaID=7046926946
[2026-03-15 05:27:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 07:32:55]  *** The last 200 lines of the pilot log: ***
[2026-03-15 07:32:55] 2026-03-15 06:31:56,842 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 07:32:55] 2026-03-15 06:31:56,842 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 07:32:55] 2026-03-15 06:31:56,842 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 07:32:55] 2026-03-15 06:31:56,842 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 07:32:55] 2026-03-15 06:31:56,842 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 07:32:55] 2026-03-15 06:31:56,842 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 07:32:55] 2026-03-15 06:31:56,842 | INFO     | job 7046926946 has completed (purged errors)
[2026-03-15 07:32:55] 2026-03-15 06:31:56,842 | INFO     | overall cleanup function is called
[2026-03-15 07:32:55] 2026-03-15 06:31:57,848 | INFO     | --- collectZombieJob: --- 10, [2803761]
[2026-03-15 07:32:55] 2026-03-15 06:31:57,848 | INFO     | zombie collector waiting for pid 2803761
[2026-03-15 07:32:55] 2026-03-15 06:31:57,849 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 07:32:55] 2026-03-15 06:31:57,849 | INFO     | collected zombie processes
[2026-03-15 07:32:55] 2026-03-15 06:31:57,849 | INFO     | will attempt to kill all subprocesses of pid=2803761
[2026-03-15 07:32:55] 2026-03-15 06:31:57,886 | INFO     | process IDs to be killed: [2803761] (in reverse order)
[2026-03-15 07:32:55] 2026-03-15 06:31:57,909 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 07:32:55] 2026-03-15 06:31:57,909 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 07:32:55] 2026-03-15 06:31:57,910 | INFO     | did not find any defunct processes belonging to 2803761
[2026-03-15 07:32:55] 2026-03-15 06:31:57,910 | INFO     | did not find any defunct processes belonging to 2803761
[2026-03-15 07:32:55] 2026-03-15 06:31:57,911 | INFO     | ready for new job
[2026-03-15 07:32:55] 2026-03-15 06:31:57,911 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 07:32:55] 2026-03-15 06:31:57,911 | INFO     | **************************************
[2026-03-15 07:32:55] 2026-03-15 06:31:57,911 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 07:32:55] 2026-03-15 06:31:57,911 | INFO     | **************************************
[2026-03-15 07:32:55] 2026-03-15 06:31:57,911 | INFO     | 
[2026-03-15 07:32:55] 2026-03-15 06:31:57,911 | INFO     | architecture information:
[2026-03-15 07:32:55] 2026-03-15 06:31:57,912 | INFO     | executing command: cat /etc/os-release
[2026-03-15 07:32:55] 2026-03-15 06:31:57,921 | INFO     | cat /etc/os-release:
[2026-03-15 07:32:55] NAME="CentOS Linux"
[2026-03-15 07:32:55] VERSION="7 (Core)"
[2026-03-15 07:32:55] ID="centos"
[2026-03-15 07:32:55] ID_LIKE="rhel fedora"
[2026-03-15 07:32:55] VERSION_ID="7"
[2026-03-15 07:32:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 07:32:55] ANSI_COLOR="0;31"
[2026-03-15 07:32:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 07:32:55] HOME_URL="https://www.centos.org/"
[2026-03-15 07:32:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 07:32:55] 
[2026-03-15 07:32:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 07:32:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 07:32:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 07:32:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 07:32:55] 
[2026-03-15 07:32:55] 2026-03-15 06:31:57,921 | INFO     | **************************************
[2026-03-15 07:32:55] 2026-03-15 06:31:58,424 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 07:32:55] 2026-03-15 06:31:58,437 | INFO     | sufficient remaining disk space (492769902592 B)
[2026-03-15 07:32:55] 2026-03-15 06:31:58,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 07:32:55] 2026-03-15 06:31:58,437 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 07:32:55] 2026-03-15 06:31:58,437 | INFO     | update_server=False
[2026-03-15 07:32:55] 2026-03-15 06:31:58,437 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 07:32:55] 2026-03-15 06:31:58,437 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 07:32:55] 2026-03-15 06:31:58,907 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 07:32:55] 2026-03-15 06:31:58,907 | INFO     | aborting loop
[2026-03-15 07:32:55] 2026-03-15 06:31:59,097 | INFO     | all data control threads have been joined
[2026-03-15 07:32:55] 2026-03-15 06:31:59,367 | INFO     | all job control threads have been joined
[2026-03-15 07:32:55] 2026-03-15 06:31:59,415 | INFO     | all payload control threads have been joined
[2026-03-15 07:32:55] 2026-03-15 06:31:59,443 | INFO     | [job] retrieve thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:31:59,443 | INFO     | [job] queue monitor thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:31:59,459 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 07:32:55] 2026-03-15 06:31:59,485 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:31:59,503 | INFO     | [payload] failed_post thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:31:59,518 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:31:59,631 | INFO     | [data] copytool_in thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:31:59,913 | INFO     | [job] job monitor thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:32:00,103 | INFO     | [data] control thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:32:00,142 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 07:32:55] 2026-03-15 06:32:00,176 | INFO     | [payload] validate_post thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:32:00,373 | INFO     | [job] control thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:32:00,421 | INFO     | [payload] control thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:32:00,828 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:32:00,878 | INFO     | [job] validate thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:32:01,466 | INFO     | [data] copytool_out thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:32:04,149 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:32:08,784 | INFO     | job.realtimelogging is not enabled
[2026-03-15 07:32:55] 2026-03-15 06:32:09,790 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 07:32:55] 2026-03-15 06:32:29,071 | INFO     | PID=2799347 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 07:32:55] 2026-03-15 06:32:29,071 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 07:32:55] 2026-03-15 06:32:29,071 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 07:32:55] 2026-03-15 06:32:29,071 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 07:32:55] 2026-03-15 06:32:49,685 | INFO     | [monitor] cgroup control has ended
[2026-03-15 07:32:55] 2026-03-15 06:32:49,948 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139642252224320)>', '<ExcThread(monitor, started 139641306990336)>']
[2026-03-15 07:32:55] 2026-03-15 06:32:50,177 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 07:32:55] 2026-03-15 06:32:50,177 | INFO     | [monitor] control thread has ended
[2026-03-15 07:32:55] 2026-03-15 06:32:54,974 | INFO     | all workflow threads have been joined
[2026-03-15 07:32:55] 2026-03-15 06:32:54,975 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 07:32:55] 2026-03-15 06:32:54,976 | INFO     | traces error code: 0
[2026-03-15 07:32:55] 2026-03-15 06:32:54,976 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 07:32:55] 2026-03-15 06:32:55,019 [wrapper] ==== pilot stdout END ====
[2026-03-15 07:32:55] 2026-03-15 06:32:55,022 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 07:32:55] 2026-03-15 06:32:55,024 [wrapper] pilotpid: 2799347
[2026-03-15 07:32:55] 2026-03-15 06:32:55,026 [wrapper] Pilot exit status: 0
[2026-03-15 07:32:55] 2026-03-15 06:32:55,032 [wrapper] pandaids: 7046926946
[2026-03-15 07:32:55] 2026-03-15 06:32:55,048 [wrapper] cleanup supervisor_pilot 2809951 2799348
[2026-03-15 07:32:55] 2026-03-15 06:32:55,050 [wrapper] Test setup, not cleaning
[2026-03-15 07:32:55] 2026-03-15 06:32:55,052 [wrapper] apfmon messages muted
[2026-03-15 07:32:55] 2026-03-15 06:32:55,054 [wrapper] ==== wrapper stdout END ====
[2026-03-15 07:32:55] 2026-03-15 06:32:55,056 [wrapper] ==== wrapper stderr END ====
[2026-03-15 07:32:55]  *** Error codes and diagnostics ***
[2026-03-15 07:32:55]     "exeErrorCode": 0,
[2026-03-15 07:32:55]     "exeErrorDiag": "",
[2026-03-15 07:32:55]     "pilotErrorCode": 0,
[2026-03-15 07:32:55]     "pilotErrorDiag": "",
[2026-03-15 07:32:55]  *** Listing of results directory ***
[2026-03-15 07:32:55] total 625608
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc    585013 Mar 14 16:02 pilot3.tar.gz
[2026-03-15 07:32:55] -rwx------ 1 boinc boinc     36322 Mar 14 16:03 runpilot2-wrapper.sh
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc      5111 Mar 14 16:05 queuedata.json
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc       100 Mar 15 05:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 07:32:55] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 05:27 run_atlas
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc       105 Mar 15 05:27 job.xml
[2026-03-15 07:32:55] -rw-r--r-- 2 boinc boinc 444252439 Mar 15 05:27 EVNT.46701403._001947.pool.root.1
[2026-03-15 07:32:55] drwxrwx--x 2 boinc boinc      4096 Mar 15 05:27 shared
[2026-03-15 07:32:55] -rw-r--r-- 2 boinc boinc    597531 Mar 15 05:27 input.tar.gz
[2026-03-15 07:32:55] -rw-r--r-- 2 boinc boinc     15845 Mar 15 05:27 start_atlas.sh
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc         0 Mar 15 05:27 boinc_setup_complete
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc      6205 Mar 15 05:27 init_data.xml
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc         0 Mar 15 05:27 boinc_lockfile
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc      2563 Mar 15 05:27 pandaJob.out
[2026-03-15 07:32:55] -rw------- 1 boinc boinc   1006481 Mar 15 05:27 agis_schedconf.cvmfs.json
[2026-03-15 07:32:55] -rw------- 1 boinc boinc   1511579 Mar 15 05:27 agis_ddmendpoints.agis.ALL.json
[2026-03-15 07:32:55] -rw------- 1 boinc boinc       419 Mar 15 05:27 workernode_map.json
[2026-03-15 07:32:55] drwx------ 5 boinc boinc      4096 Mar 15 05:27 pilot3
[2026-03-15 07:32:55] -rw------- 1 boinc boinc 189776830 Mar 15 07:31 HITS.48955010._046180.pool.root.1
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc       531 Mar 15 07:31 boinc_task_state.xml
[2026-03-15 07:32:55] -rw------- 1 boinc boinc      1022 Mar 15 07:31 memory_monitor_summary.json
[2026-03-15 07:32:55] -rw------- 1 boinc boinc    262948 Mar 15 07:31 log.48955010._046180.job.log.tgz.1
[2026-03-15 07:32:55] -rw------- 1 boinc boinc      6306 Mar 15 07:31 heartbeat.json
[2026-03-15 07:32:55] -rw------- 1 boinc boinc        95 Mar 15 07:32 pilot_heartbeat.json
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc      8192 Mar 15 07:32 boinc_mmap_file
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc        27 Mar 15 07:32 wrapper_checkpoint.txt
[2026-03-15 07:32:55] -rw------- 1 boinc boinc      4820 Mar 15 07:32 pilotlog.txt
[2026-03-15 07:32:55] -rw------- 1 boinc boinc   1072509 Mar 15 07:32 log.48955010._046180.job.log.1
[2026-03-15 07:32:55] -rw------- 1 boinc boinc       357 Mar 15 07:32 output.list
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc       620 Mar 15 07:32 runtime_log
[2026-03-15 07:32:55] -rw------- 1 boinc boinc   1351680 Mar 15 07:32 result.tar.gz
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc      8896 Mar 15 07:32 runtime_log.err
[2026-03-15 07:32:55] -rw------- 1 boinc boinc       657 Mar 15 07:32 P0cKDmphfL9n9Rq4apOajLDm4fhM0noT9bVooX4SDm4fqLDmacp2Fo.diag
[2026-03-15 07:32:55] -rw-r--r-- 1 boinc boinc     11509 Mar 15 07:32 stderr.txt
[2026-03-15 07:32:55] HITS file was successfully produced:
[2026-03-15 07:32:55] -rw------- 1 boinc boinc 189776830 Mar 15 07:31 shared/HITS.pool.root.1
[2026-03-15 07:32:55]  *** Contents of shared directory: ***
[2026-03-15 07:32:55] total 621100
[2026-03-15 07:32:55] -rw-r--r-- 2 boinc boinc 444252439 Mar 15 05:27 ATLAS.root_0
[2026-03-15 07:32:55] -rw-r--r-- 2 boinc boinc    597531 Mar 15 05:27 input.tar.gz
[2026-03-15 07:32:55] -rw-r--r-- 2 boinc boinc     15845 Mar 15 05:27 start_atlas.sh
[2026-03-15 07:32:55] -rw------- 1 boinc boinc 189776830 Mar 15 07:31 HITS.pool.root.1
[2026-03-15 07:32:55] -rw------- 1 boinc boinc   1351680 Mar 15 07:32 result.tar.gz
07:32:56 (2795316): run_atlas exited; CPU time 14343.495826
07:32:56 (2795316): called boinc_finish(0)

</stderr_txt>
]]>

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