Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
17:03:44 (3307524): wrapper (7.7.26015): starting
17:03:44 (3307524): wrapper: running run_atlas (--nthreads 12)
[2026-03-14 17:03:44] Arguments: --nthreads 12
[2026-03-14 17:03:44] Threads: 12
[2026-03-14 17:03:44] Checking for CVMFS
[2026-03-14 17:03:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 17:03:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 17:03:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 17:03:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 17:03:44] 2.12.7.0 4877 3128 71292 157289 3 187 2581826 4194304 1819 130560 0 7685371 99.997 105833 2024 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-03-14 17:03:44] CVMFS is ok
[2026-03-14 17:03:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 17:03:44] Checking for apptainer binary...
[2026-03-14 17:03:44] apptainer is not installed, using version from CVMFS
[2026-03-14 17:03:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 17:03:44] Trebeth
[2026-03-14 17:03:44] apptainer works
[2026-03-14 17:03:44] Set ATHENA_PROC_NUMBER=12
[2026-03-14 17:03:44] Set ATHENA_CORE_NUMBER=12
[2026-03-14 17:03:44] Starting ATLAS job with PandaID=7046377030
[2026-03-14 17:03:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 18:03:11]  *** The last 200 lines of the pilot log: ***
[2026-03-14 18:03:11]  domain=
[2026-03-14 18:03:11]  filesize=389573
[2026-03-14 18:03:11]  filetype=log
[2026-03-14 18:03:11]  guid=7f24c256-676f-471c-8c0d-fd5c2a412fbb
[2026-03-14 18:03:11]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-14 18:03:11]  is_altstaged=None
[2026-03-14 18:03:11]  is_tar=False
[2026-03-14 18:03:11]  lfn=log.48955015._024307.job.log.tgz.1
[2026-03-14 18:03:11]  mtime=0
[2026-03-14 18:03:11]  protocol_id=None
[2026-03-14 18:03:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-14 18:03:11]  replicas=None
[2026-03-14 18:03:11]  scope=mc23_13p6TeV
[2026-03-14 18:03:11]  status=None
[2026-03-14 18:03:11]  status_code=0
[2026-03-14 18:03:11]  storage_token=
[2026-03-14 18:03:11]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-7046377030/log.48955015._024307.job.log.tgz.1
[2026-03-14 18:03:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/72/log.48955015._024307.job.log.tgz.1
[2026-03-14 18:03:11]  workdir=None
[2026-03-14 18:03:11] ]
[2026-03-14 18:03:11] 2026-03-14 22:02:04,049 | INFO     | transferring file log.48955015._024307.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-7046377030/log.48955015._024307.job.log.tgz.1 to /var/lib/boinc
[2026-03-14 18:03:11] 2026-03-14 22:02:04,049 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-7046377030/log.48955015._024307.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.489550
[2026-03-14 18:03:11] 2026-03-14 22:02:04,062 | INFO     | adding to output.list: log.48955015._024307.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/72/log.48955015._024307.job.log.tg
[2026-03-14 18:03:11] 2026-03-14 22:02:04,063 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-14 18:03:11] 2026-03-14 22:02:04,063 | INFO     | summary of transferred files:
[2026-03-14 18:03:11] 2026-03-14 22:02:04,063 | INFO     |  -- lfn=log.48955015._024307.job.log.tgz.1, status_code=0, status=transferred
[2026-03-14 18:03:11] 2026-03-14 22:02:04,063 | INFO     | stage-out finished correctly
[2026-03-14 18:03:11] 2026-03-14 22:02:04,528 | INFO     | monitor loop #265: job 0:7046377030 is in state 'finished'
[2026-03-14 18:03:11] 2026-03-14 22:02:04,528 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-14 18:03:11] 2026-03-14 22:02:06,002 | INFO     | time since job start (3487s) is within the limit (345600.0s)
[2026-03-14 18:03:11] 2026-03-14 22:02:06,369 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 18:03:11] 2026-03-14 22:02:06,421 | INFO     | job 7046377030 has state=finished
[2026-03-14 18:03:11] 2026-03-14 22:02:06,421 | INFO     | preparing for final server update for job 7046377030 in state='finished'
[2026-03-14 18:03:11] 2026-03-14 22:02:06,422 | INFO     | reading metadata from: /var/lib/boinc-client/slots/3/PanDA_Pilot-7046377030/jobReport.json
[2026-03-14 18:03:11] 2026-03-14 22:02:06,425 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/3/workernode_map.json
[2026-03-14 18:03:11] 2026-03-14 22:02:06,425 | INFO     | this job has now completed (state=finished)
[2026-03-14 18:03:11] 2026-03-14 22:02:06,425 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 18:03:11] 2026-03-14 22:02:06,425 | INFO     | log transfer has been attempted: DONE
[2026-03-14 18:03:11] 2026-03-14 22:02:06,426 | INFO     | job 7046377030 has finished - writing final server update
[2026-03-14 18:03:11] 2026-03-14 22:02:06,426 | INFO     | total number of processed events: 400 (read)
[2026-03-14 18:03:11] 2026-03-14 22:02:06,460 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-7046377030/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 18:03:11] 2026-03-14 22:02:06,461 | INFO     | extracted standard info from prmon json
[2026-03-14 18:03:11] 2026-03-14 22:02:06,461 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 18:03:11] 2026-03-14 22:02:06,461 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 18:03:11] 2026-03-14 22:02:06,461 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 18:03:11] 2026-03-14 22:02:06,462 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 18:03:11] 2026-03-14 22:02:06,463 | INFO     | fitting pss+swap vs Time
[2026-03-14 18:03:11] 2026-03-14 22:02:06,463 | INFO     | sum of square deviations: 38744912.5
[2026-03-14 18:03:11] 2026-03-14 22:02:06,464 | INFO     | sum of deviations: 4800422023.000001
[2026-03-14 18:03:11] 2026-03-14 22:02:06,464 | INFO     | mean x: 1773524059.5
[2026-03-14 18:03:11] 2026-03-14 22:02:06,464 | INFO     | mean y: 2608856.92
[2026-03-14 18:03:11] 2026-03-14 22:02:06,464 | INFO     | intersect: -219733697259.2485
[2026-03-14 18:03:11] 2026-03-14 22:02:06,464 | INFO     | chi2: 0.4864020075720522
[2026-03-14 18:03:11] 2026-03-14 22:02:06,464 | INFO     | current memory leak: 123.90 B/s (using 50 data points, chi2=0.49)
[2026-03-14 18:03:11] 2026-03-14 22:02:06,465 | INFO     | could have reported an average CPU frequency of 1222 MHz (5 samples)
[2026-03-14 18:03:11] 2026-03-14 22:02:06,465 | INFO     | ..............................
[2026-03-14 18:03:11] 2026-03-14 22:02:06,465 | INFO     | . Timing measurements:
[2026-03-14 18:03:11] 2026-03-14 22:02:06,465 | INFO     | . get job = 0 s
[2026-03-14 18:03:11] 2026-03-14 22:02:06,465 | INFO     | . initial setup = 6 s
[2026-03-14 18:03:11] 2026-03-14 22:02:06,465 | INFO     | . payload setup = 5 s
[2026-03-14 18:03:11] 2026-03-14 22:02:06,465 | INFO     | . stage-in = 0 s
[2026-03-14 18:03:11] 2026-03-14 22:02:06,466 | INFO     | . payload execution = 3463 s
[2026-03-14 18:03:11] 2026-03-14 22:02:06,466 | INFO     | . stage-out = 0 s
[2026-03-14 18:03:11] 2026-03-14 22:02:06,466 | INFO     | . log creation = 0 s
[2026-03-14 18:03:11] 2026-03-14 22:02:06,466 | INFO     | ..............................
[2026-03-14 18:03:11] 2026-03-14 22:02:06,551 | INFO     | 
[2026-03-14 18:03:11] 2026-03-14 22:02:06,552 | INFO     | job summary report
[2026-03-14 18:03:11] 2026-03-14 22:02:06,552 | INFO     | --------------------------------------------------
[2026-03-14 18:03:11] 2026-03-14 22:02:06,552 | INFO     | PanDA job id: 7046377030
[2026-03-14 18:03:11] 2026-03-14 22:02:06,552 | INFO     | task id: 48955015
[2026-03-14 18:03:11] 2026-03-14 22:02:06,552 | INFO     | errors: (none)
[2026-03-14 18:03:11] 2026-03-14 22:02:06,552 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 18:03:11] 2026-03-14 22:02:06,552 | INFO     | pilot state: finished 
[2026-03-14 18:03:11] 2026-03-14 22:02:06,552 | INFO     | transexitcode: 0
[2026-03-14 18:03:11] 2026-03-14 22:02:06,552 | INFO     | exeerrorcode: 0
[2026-03-14 18:03:11] 2026-03-14 22:02:06,553 | INFO     | exeerrordiag: 
[2026-03-14 18:03:11] 2026-03-14 22:02:06,553 | INFO     | exitcode: 0
[2026-03-14 18:03:11] 2026-03-14 22:02:06,553 | INFO     | exitmsg: OK
[2026-03-14 18:03:11] 2026-03-14 22:02:06,553 | INFO     | cpuconsumptiontime: 34621 s
[2026-03-14 18:03:11] 2026-03-14 22:02:06,553 | INFO     | nevents: 400
[2026-03-14 18:03:11] 2026-03-14 22:02:06,553 | INFO     | neventsw: 0
[2026-03-14 18:03:11] 2026-03-14 22:02:06,553 | INFO     | pid: 3316331
[2026-03-14 18:03:11] 2026-03-14 22:02:06,553 | INFO     | pgrp: 3316331
[2026-03-14 18:03:11] 2026-03-14 22:02:06,553 | INFO     | corecount: 12
[2026-03-14 18:03:11] 2026-03-14 22:02:06,553 | INFO     | event service: False
[2026-03-14 18:03:11] 2026-03-14 22:02:06,553 | INFO     | sizes: {0: 2280246, 11: 2280246, 3472: 2305944, 3473: 2314956, 3476: 2315238}
[2026-03-14 18:03:11] 2026-03-14 22:02:06,554 | INFO     | --------------------------------------------------
[2026-03-14 18:03:11] 2026-03-14 22:02:06,554 | INFO     | 
[2026-03-14 18:03:11] 2026-03-14 22:02:06,554 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-03-14 18:03:11] 2026-03-14 22:02:06,575 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,576 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,576 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,576 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,576 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,577 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,577 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,577 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,578 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 18:03:11] 2026-03-14 22:02:06,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,578 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 18:03:11] 2026-03-14 22:02:06,578 | INFO     | job 7046377030 has completed (purged errors)
[2026-03-14 18:03:11] 2026-03-14 22:02:06,578 | INFO     | overall cleanup function is called
[2026-03-14 18:03:11] 2026-03-14 22:02:07,587 | INFO     | --- collectZombieJob: --- 10, [3316331]
[2026-03-14 18:03:11] 2026-03-14 22:02:07,587 | INFO     | zombie collector waiting for pid 3316331
[2026-03-14 18:03:11] 2026-03-14 22:02:07,587 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 18:03:11] 2026-03-14 22:02:07,588 | INFO     | collected zombie processes
[2026-03-14 18:03:11] 2026-03-14 22:02:07,588 | INFO     | will attempt to kill all subprocesses of pid=3316331
[2026-03-14 18:03:11] 2026-03-14 22:02:07,736 | INFO     | process IDs to be killed: [3316331] (in reverse order)
[2026-03-14 18:03:11] 2026-03-14 22:02:07,798 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 18:03:11] 2026-03-14 22:02:07,799 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 18:03:11] 2026-03-14 22:02:07,807 | INFO     | did not find any defunct processes belonging to 3316331
[2026-03-14 18:03:11] 2026-03-14 22:02:07,813 | INFO     | did not find any defunct processes belonging to 3316331
[2026-03-14 18:03:11] 2026-03-14 22:02:07,814 | INFO     | ready for new job
[2026-03-14 18:03:11] 2026-03-14 22:02:07,814 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 18:03:11] 2026-03-14 22:02:07,815 | INFO     | **************************************
[2026-03-14 18:03:11] 2026-03-14 22:02:07,816 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 18:03:11] 2026-03-14 22:02:07,816 | INFO     | **************************************
[2026-03-14 18:03:11] 2026-03-14 22:02:07,816 | INFO     | 
[2026-03-14 18:03:11] 2026-03-14 22:02:07,838 | INFO     | architecture information:
[2026-03-14 18:03:11] 2026-03-14 22:02:07,839 | INFO     | executing command: cat /etc/os-release
[2026-03-14 18:03:11] 2026-03-14 22:02:07,850 | INFO     | cat /etc/os-release:
[2026-03-14 18:03:11] NAME="CentOS Linux"
[2026-03-14 18:03:11] VERSION="7 (Core)"
[2026-03-14 18:03:11] ID="centos"
[2026-03-14 18:03:11] ID_LIKE="rhel fedora"
[2026-03-14 18:03:11] VERSION_ID="7"
[2026-03-14 18:03:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 18:03:11] ANSI_COLOR="0;31"
[2026-03-14 18:03:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 18:03:11] HOME_URL="https://www.centos.org/"
[2026-03-14 18:03:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 18:03:11] 
[2026-03-14 18:03:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 18:03:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 18:03:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 18:03:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 18:03:11] 
[2026-03-14 18:03:11] 2026-03-14 22:02:07,851 | INFO     | **************************************
[2026-03-14 18:03:11] 2026-03-14 22:02:08,354 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-03-14 18:03:11] 2026-03-14 22:02:08,369 | INFO     | sufficient remaining disk space (393452978176 B)
[2026-03-14 18:03:11] 2026-03-14 22:02:08,369 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 18:03:11] 2026-03-14 22:02:08,369 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 18:03:11] 2026-03-14 22:02:08,369 | INFO     | update_server=False
[2026-03-14 18:03:11] 2026-03-14 22:02:08,369 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 18:03:11] 2026-03-14 22:02:08,369 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 18:03:11] 2026-03-14 22:02:08,370 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 18:03:11] 2026-03-14 22:02:08,370 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 18:03:11] 2026-03-14 22:02:08,371 | INFO     | aborting loop
[2026-03-14 18:03:11] 2026-03-14 22:02:08,651 | INFO     | all payload control threads have been joined
[2026-03-14 18:03:11] 2026-03-14 22:02:08,782 | INFO     | all data control threads have been joined
[2026-03-14 18:03:11] 2026-03-14 22:02:09,375 | INFO     | [job] retrieve thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:09,376 | INFO     | [job] queue monitor thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:09,376 | INFO     | [job] job monitor thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:09,457 | INFO     | all job control threads have been joined
[2026-03-14 18:03:11] 2026-03-14 22:02:09,617 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 18:03:11] 2026-03-14 22:02:09,657 | INFO     | [payload] control thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:09,736 | INFO     | [payload] validate_post thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:09,787 | INFO     | [data] control thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:09,891 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:10,431 | INFO     | [payload] failed_post thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:10,449 | INFO     | [job] validate thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:10,463 | INFO     | [job] control thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:10,575 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:10,661 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:10,743 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:10,834 | INFO     | [data] copytool_in thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:11,622 | INFO     | [data] copytool_out thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:12,376 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 18:03:11] 2026-03-14 22:02:39,289 | INFO     | PID=3311555 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 18:03:11] 2026-03-14 22:02:39,290 | INFO     | .. there are 4 such processes running
[2026-03-14 18:03:11] 2026-03-14 22:02:39,290 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 18:03:11] 2026-03-14 22:02:39,290 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 18:03:11] 2026-03-14 22:02:39,290 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 18:03:11] 2026-03-14 22:03:04,482 | INFO     | [monitor] cgroup control has ended
[2026-03-14 18:03:11] 2026-03-14 22:03:06,118 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140512523016000)>', '<ExcThread(monitor, started 140511734134528)>']
[2026-03-14 18:03:11] 2026-03-14 22:03:06,418 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 18:03:11] 2026-03-14 22:03:06,419 | INFO     | [monitor] control thread has ended
[2026-03-14 18:03:11] 2026-03-14 22:03:11,144 | INFO     | all workflow threads have been joined
[2026-03-14 18:03:11] 2026-03-14 22:03:11,144 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 18:03:11] 2026-03-14 22:03:11,144 | INFO     | traces error code: 0
[2026-03-14 18:03:11] 2026-03-14 22:03:11,145 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 18:03:11] 2026-03-14 22:03:11,219 [wrapper] ==== pilot stdout END ====
[2026-03-14 18:03:11] 2026-03-14 22:03:11,222 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 18:03:11] 2026-03-14 22:03:11,224 [wrapper] pilotpid: 3311555
[2026-03-14 18:03:11] 2026-03-14 22:03:11,227 [wrapper] Pilot exit status: 0
[2026-03-14 18:03:11] 2026-03-14 22:03:11,236 [wrapper] pandaids: 7046377030
[2026-03-14 18:03:11] 2026-03-14 22:03:11,269 [wrapper] cleanup supervisor_pilot 3343273 3311556
[2026-03-14 18:03:11] 2026-03-14 22:03:11,272 [wrapper] Test setup, not cleaning
[2026-03-14 18:03:11] 2026-03-14 22:03:11,275 [wrapper] apfmon messages muted
[2026-03-14 18:03:11] 2026-03-14 22:03:11,278 [wrapper] ==== wrapper stdout END ====
[2026-03-14 18:03:11] 2026-03-14 22:03:11,281 [wrapper] ==== wrapper stderr END ====
[2026-03-14 18:03:11]  *** Error codes and diagnostics ***
[2026-03-14 18:03:11]     "exeErrorCode": 0,
[2026-03-14 18:03:11]     "exeErrorDiag": "",
[2026-03-14 18:03:11]     "pilotErrorCode": 0,
[2026-03-14 18:03:11]     "pilotErrorDiag": "",
[2026-03-14 18:03:11]  *** Listing of results directory ***
[2026-03-14 18:03:11] total 630164
[2026-03-14 18:03:11] -rw-r--r-- 1 boinc boinc    585013 Mar 14 05:39 pilot3.tar.gz
[2026-03-14 18:03:11] -rwx------ 1 boinc boinc     36322 Mar 14 05:40 runpilot2-wrapper.sh
[2026-03-14 18:03:11] -rw-r--r-- 1 boinc boinc      5111 Mar 14 05:41 queuedata.json
[2026-03-14 18:03:11] -rw-r--r-- 1 boinc boinc       100 Mar 14 17:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 18:03:11] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 17:03 run_atlas
[2026-03-14 18:03:11] -rw-r--r-- 1 boinc boinc       105 Mar 14 17:03 job.xml
[2026-03-14 18:03:11] -rw-r--r-- 2 boinc boinc     15845 Mar 14 17:03 start_atlas.sh
[2026-03-14 18:03:11] drwxrwx--x 2 boinc boinc      4096 Mar 14 17:03 shared
[2026-03-14 18:03:11] -rw-r--r-- 2 boinc boinc    597533 Mar 14 17:03 input.tar.gz
[2026-03-14 18:03:11] -rw-r--r-- 1 boinc boinc      7579 Mar 14 17:03 init_data.xml
[2026-03-14 18:03:11] -rw-r--r-- 2 boinc boinc 444523733 Mar 14 17:03 EVNT.46701403._002543.pool.root.1
[2026-03-14 18:03:11] -rw-r--r-- 1 boinc boinc         0 Mar 14 17:03 boinc_lockfile
[2026-03-14 18:03:11] -rw-r--r-- 1 boinc boinc      2573 Mar 14 17:03 pandaJob.out
[2026-03-14 18:03:11] -rw------- 1 boinc boinc        50 Mar 14 17:03 setup.sh.local
[2026-03-14 18:03:11] -rw------- 1 boinc boinc   1006481 Mar 14 17:03 agis_schedconf.cvmfs.json
[2026-03-14 18:03:11] -rw------- 1 boinc boinc   1511579 Mar 14 17:03 agis_ddmendpoints.agis.ALL.json
[2026-03-14 18:03:11] -rw------- 1 boinc boinc       430 Mar 14 17:03 workernode_map.json
[2026-03-14 18:03:11] drwx------ 5 boinc boinc      4096 Mar 14 17:03 pilot3
[2026-03-14 18:03:11] -rw------- 1 boinc boinc 194973056 Mar 14 18:01 HITS.48955015._024307.pool.root.1
[2026-03-14 18:03:11] -rw-r--r-- 1 boinc boinc       530 Mar 14 18:01 boinc_task_state.xml
[2026-03-14 18:03:11] -rw------- 1 boinc boinc        95 Mar 14 18:01 pilot_heartbeat.json
[2026-03-14 18:03:11] -rw------- 1 boinc boinc      1029 Mar 14 18:01 memory_monitor_summary.json
[2026-03-14 18:03:11] -rw------- 1 boinc boinc    389573 Mar 14 18:02 log.48955015._024307.job.log.tgz.1
[2026-03-14 18:03:11] -rw------- 1 boinc boinc      6340 Mar 14 18:02 heartbeat.json
[2026-03-14 18:03:11] -rw-r--r-- 1 boinc boinc        27 Mar 14 18:02 wrapper_checkpoint.txt
[2026-03-14 18:03:11] -rw-r--r-- 1 boinc boinc      8192 Mar 14 18:03 boinc_mmap_file
[2026-03-14 18:03:11] -rw------- 1 boinc boinc      4827 Mar 14 18:03 pilotlog.txt
[2026-03-14 18:03:11] -rw------- 1 boinc boinc    533294 Mar 14 18:03 log.48955015._024307.job.log.1
[2026-03-14 18:03:11] -rw------- 1 boinc boinc       357 Mar 14 18:03 output.list
[2026-03-14 18:03:11] -rw-r--r-- 1 boinc boinc       620 Mar 14 18:03 runtime_log
[2026-03-14 18:03:11] -rw------- 1 boinc boinc    942080 Mar 14 18:03 result.tar.gz
[2026-03-14 18:03:11] -rw------- 1 boinc boinc       649 Mar 14 18:03 zpxLDmZfaL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmWWsLDmZ8O5Wo.diag
[2026-03-14 18:03:11] -rw-r--r-- 1 boinc boinc      9403 Mar 14 18:03 runtime_log.err
[2026-03-14 18:03:11] -rw-r--r-- 1 boinc boinc     20850 Mar 14 18:03 stderr.txt
[2026-03-14 18:03:11] HITS file was successfully produced:
[2026-03-14 18:03:11] -rw------- 1 boinc boinc 194973056 Mar 14 18:01 shared/HITS.pool.root.1
[2026-03-14 18:03:11]  *** Contents of shared directory: ***
[2026-03-14 18:03:11] total 626040
[2026-03-14 18:03:11] -rw-r--r-- 2 boinc boinc     15845 Mar 14 17:03 start_atlas.sh
[2026-03-14 18:03:11] -rw-r--r-- 2 boinc boinc    597533 Mar 14 17:03 input.tar.gz
[2026-03-14 18:03:11] -rw-r--r-- 2 boinc boinc 444523733 Mar 14 17:03 ATLAS.root_0
[2026-03-14 18:03:11] -rw------- 1 boinc boinc 194973056 Mar 14 18:01 HITS.pool.root.1
[2026-03-14 18:03:11] -rw------- 1 boinc boinc    942080 Mar 14 18:03 result.tar.gz
18:03:12 (3307524): run_atlas exited; CPU time 34678.162866
18:03:12 (3307524): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN