Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:48:02 (29806): wrapper (7.7.26015): starting
18:48:02 (29806): wrapper: running run_atlas (--nthreads 8)
[2026-03-14 18:48:02] Arguments: --nthreads 8
[2026-03-14 18:48:02] Threads: 8
[2026-03-14 18:48:02] Checking for CVMFS
[2026-03-14 18:48:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 18:48:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 18:48:03] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 18:48:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 18:48:03] 2.11.0.0 4478 221657 106328 157285 2 188 4042478 4096000 1834 130560 3 3957087 99.223 10587180 361 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-14 18:48:03] CVMFS is ok
[2026-03-14 18:48:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 18:48:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 18:48:03] Further information can be found at the LHC@home message board.
[2026-03-14 18:48:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 18:48:03] Checking for apptainer binary...
[2026-03-14 18:48:03] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-14 18:48:03] apptainer is not installed, using version from CVMFS
[2026-03-14 18:48:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 18:48:03] WARNING: Environment variable TMPDIR already has value [/tmp/job_11309770/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node225
[2026-03-14 18:48:03] apptainer works
[2026-03-14 18:48:03] Set ATHENA_PROC_NUMBER=8
[2026-03-14 18:48:03] Set ATHENA_CORE_NUMBER=8
[2026-03-14 18:48:03] Starting ATLAS job with PandaID=7046436184
[2026-03-14 18:48:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11309770/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 19:32:20]  *** The last 200 lines of the pilot log: ***
[2026-03-14 19:32:20] ]
[2026-03-14 19:32:20] 2026-03-14 18:31:17,328 | INFO     | transferring file log.48955015._024415.job.log.tgz.1 from /tmp/job_11309770/atlas/pilot/slots/0/PanDA_Pilot-7046436184/log.48955015._024415.job.log.tgz.1 to /tmp/j
[2026-03-14 19:32:20] 2026-03-14 18:31:17,328 | INFO     | executing command: /usr/bin/env mv /tmp/job_11309770/atlas/pilot/slots/0/PanDA_Pilot-7046436184/log.48955015._024415.job.log.tgz.1 /tmp/job_11309770/atlas/pilot/sl
[2026-03-14 19:32:20] 2026-03-14 18:31:17,335 | INFO     | adding to output.list: log.48955015._024415.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d4/d7/log.48955015._024415.job.log.tg
[2026-03-14 19:32:20] 2026-03-14 18:31:17,336 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-14 19:32:20] 2026-03-14 18:31:17,336 | INFO     | summary of transferred files:
[2026-03-14 19:32:20] 2026-03-14 18:31:17,336 | INFO     |  -- lfn=log.48955015._024415.job.log.tgz.1, status_code=0, status=transferred
[2026-03-14 19:32:20] 2026-03-14 18:31:17,336 | INFO     | stage-out finished correctly
[2026-03-14 19:32:20] 2026-03-14 18:31:17,791 | WARNING  | process 14389 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 19:32:20] 2026-03-14 18:31:17,791 | INFO     | using path: /tmp/job_11309770/atlas/pilot/slots/0/PanDA_Pilot-7046436184/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 19:32:20] 2026-03-14 18:31:17,791 | INFO     | using path: /tmp/job_11309770/atlas/pilot/slots/0/PanDA_Pilot-7046436184/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 19:32:20] 2026-03-14 18:31:17,792 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-14 19:32:20] 2026-03-14 18:31:17,792 | WARNING  | maxPSS not found in memory monitor output
[2026-03-14 19:32:20] 2026-03-14 18:31:17,792 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4225238 B
[2026-03-14 19:32:20] 2026-03-14 18:31:17,792 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16110 B
[2026-03-14 19:32:20] 2026-03-14 18:31:17,792 | INFO     | executing command: df -mP /tmp/job_11309770/atlas/pilot/slots/0
[2026-03-14 19:32:20] 2026-03-14 18:31:17,798 | INFO     | sufficient remaining disk space (219487928320 B)
[2026-03-14 19:32:20] 2026-03-14 18:31:17,798 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-14 19:32:20] 2026-03-14 18:31:17,799 | INFO     | size of work directory /tmp/job_11309770/atlas/pilot/slots/0/PanDA_Pilot-7046436184: 4516229 B (within 5033164800 B limit)
[2026-03-14 19:32:20] 2026-03-14 18:31:17,799 | INFO     | pfn file=/tmp/job_11309770/atlas/pilot/slots/0/PanDA_Pilot-7046436184/HITS.48955015._024415.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-14 19:32:20] 2026-03-14 18:31:17,799 | INFO     | total size of present files: 0 B (workdir size: 4516229 B)
[2026-03-14 19:32:20] 2026-03-14 18:31:17,799 | INFO     | output file size check: skipping output file /tmp/job_11309770/atlas/pilot/slots/0/PanDA_Pilot-7046436184/HITS.48955015._024415.pool.root.1 since it does not exist
[2026-03-14 19:32:20] 2026-03-14 18:31:17,902 | INFO     | number of running child processes to parent process 14389: 1
[2026-03-14 19:32:20] 2026-03-14 18:31:17,902 | INFO     | maximum number of monitored processes: 6
[2026-03-14 19:32:20] 2026-03-14 18:31:18,375 | INFO     | time since job start (2588s) is within the limit (345600.0s)
[2026-03-14 19:32:20] 2026-03-14 18:31:19,505 | INFO     | PID=4623 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-14 19:32:20] 2026-03-14 18:31:19,505 | INFO     | .. there are 5 such processes running
[2026-03-14 19:32:20] 2026-03-14 18:31:19,830 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 19:32:20] 2026-03-14 18:31:20,405 | INFO     | monitor loop #197: job 0:7046436184 is in state 'finished'
[2026-03-14 19:32:20] 2026-03-14 18:31:20,405 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-14 19:32:20] 2026-03-14 18:31:20,505 | INFO     | time since job start (2590s) is within the limit (345600.0s)
[2026-03-14 19:32:20] 2026-03-14 18:31:22,511 | INFO     | time since job start (2592s) is within the limit (345600.0s)
[2026-03-14 19:32:20] 2026-03-14 18:31:22,627 | INFO     | job 7046436184 has state=finished
[2026-03-14 19:32:20] 2026-03-14 18:31:22,627 | INFO     | preparing for final server update for job 7046436184 in state='finished'
[2026-03-14 19:32:20] 2026-03-14 18:31:22,627 | INFO     | reading metadata from: /tmp/job_11309770/atlas/pilot/slots/0/PanDA_Pilot-7046436184/jobReport.json
[2026-03-14 19:32:20] 2026-03-14 18:31:22,628 | INFO     | added worker_node to metadata from /tmp/job_11309770/atlas/pilot/slots/0/workernode_map.json
[2026-03-14 19:32:20] 2026-03-14 18:31:22,628 | INFO     | this job has now completed (state=finished)
[2026-03-14 19:32:20] 2026-03-14 18:31:22,628 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 19:32:20] 2026-03-14 18:31:22,628 | INFO     | log transfer has been attempted: DONE
[2026-03-14 19:32:20] 2026-03-14 18:31:22,628 | INFO     | job 7046436184 has finished - writing final server update
[2026-03-14 19:32:20] 2026-03-14 18:31:22,628 | INFO     | total number of processed events: 400 (read)
[2026-03-14 19:32:20] 2026-03-14 18:31:22,646 | INFO     | using path: /tmp/job_11309770/atlas/pilot/slots/0/PanDA_Pilot-7046436184/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 19:32:20] 2026-03-14 18:31:22,646 | INFO     | extracted standard info from prmon json
[2026-03-14 19:32:20] 2026-03-14 18:31:22,646 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 19:32:20] 2026-03-14 18:31:22,646 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 19:32:20] 2026-03-14 18:31:22,647 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 19:32:20] 2026-03-14 18:31:22,647 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 19:32:20] 2026-03-14 18:31:22,647 | INFO     | fitting pss+swap vs Time
[2026-03-14 19:32:20] 2026-03-14 18:31:22,647 | INFO     | sum of square deviations: 14456085.0
[2026-03-14 19:32:20] 2026-03-14 18:31:22,647 | INFO     | sum of deviations: -354363182.49999994
[2026-03-14 19:32:20] 2026-03-14 18:31:22,647 | INFO     | mean x: 1773511878.5
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | mean y: 2530237.0833333335
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | intersect: 43476770563.341324
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | chi2: 0.0019164552440252604
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | current memory leak: -24.51 B/s (using 36 data points, chi2=0.00)
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | could have reported an average CPU frequency of 2614 MHz (5 samples)
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | ..............................
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | . Timing measurements:
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | . get job = 0 s
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | . initial setup = 2 s
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | . payload setup = 2 s
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | . stage-in = 0 s
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | . payload execution = 2568 s
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | . stage-out = 0 s
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | . log creation = 0 s
[2026-03-14 19:32:20] 2026-03-14 18:31:22,648 | INFO     | ..............................
[2026-03-14 19:32:20] 2026-03-14 18:31:22,695 | INFO     | 
[2026-03-14 19:32:20] 2026-03-14 18:31:22,695 | INFO     | job summary report
[2026-03-14 19:32:20] 2026-03-14 18:31:22,695 | INFO     | --------------------------------------------------
[2026-03-14 19:32:20] 2026-03-14 18:31:22,695 | INFO     | PanDA job id: 7046436184
[2026-03-14 19:32:20] 2026-03-14 18:31:22,695 | INFO     | task id: 48955015
[2026-03-14 19:32:20] 2026-03-14 18:31:22,695 | INFO     | errors: (none)
[2026-03-14 19:32:20] 2026-03-14 18:31:22,695 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | pilot state: finished 
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | transexitcode: 0
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | exeerrorcode: 0
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | exeerrordiag: 
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | exitcode: 0
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | exitmsg: OK
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | cpuconsumptiontime: 18522 s
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | nevents: 400
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | neventsw: 0
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | pid: 14389
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | pgrp: 14389
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | corecount: 8
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | event service: False
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | sizes: {0: 2280364, 11: 2280364, 2575: 2305698, 2576: 2314726, 2578: 2314810, 2581: 2315036}
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | --------------------------------------------------
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | 
[2026-03-14 19:32:20] 2026-03-14 18:31:22,696 | INFO     | executing command: ls -lF /tmp/job_11309770/atlas/pilot/slots/0
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 19:32:20] 2026-03-14 18:31:22,706 | INFO     | job 7046436184 has completed (purged errors)
[2026-03-14 19:32:20] 2026-03-14 18:31:22,707 | INFO     | overall cleanup function is called
[2026-03-14 19:32:20] 2026-03-14 18:31:23,713 | INFO     | --- collectZombieJob: --- 10, [14389]
[2026-03-14 19:32:20] 2026-03-14 18:31:23,713 | INFO     | zombie collector waiting for pid 14389
[2026-03-14 19:32:20] 2026-03-14 18:31:23,713 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 19:32:20] 2026-03-14 18:31:23,713 | INFO     | collected zombie processes
[2026-03-14 19:32:20] 2026-03-14 18:31:23,713 | INFO     | will attempt to kill all subprocesses of pid=14389
[2026-03-14 19:32:20] 2026-03-14 18:31:23,815 | INFO     | process IDs to be killed: [14389] (in reverse order)
[2026-03-14 19:32:20] 2026-03-14 18:31:23,854 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 19:32:20] 2026-03-14 18:31:23,854 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 19:32:20] 2026-03-14 18:31:23,857 | INFO     | did not find any defunct processes belonging to 14389
[2026-03-14 19:32:20] 2026-03-14 18:31:23,861 | INFO     | did not find any defunct processes belonging to 14389
[2026-03-14 19:32:20] 2026-03-14 18:31:23,861 | INFO     | ready for new job
[2026-03-14 19:32:20] 2026-03-14 18:31:23,861 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 19:32:20] 2026-03-14 18:31:23,861 | INFO     | **************************************
[2026-03-14 19:32:20] 2026-03-14 18:31:23,861 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 19:32:20] 2026-03-14 18:31:23,861 | INFO     | **************************************
[2026-03-14 19:32:20] 2026-03-14 18:31:23,861 | INFO     | 
[2026-03-14 19:32:20] 2026-03-14 18:31:23,876 | INFO     | architecture information:
[2026-03-14 19:32:20] 2026-03-14 18:31:23,876 | INFO     | executing command: cat /etc/os-release
[2026-03-14 19:32:20] 2026-03-14 18:31:23,882 | INFO     | cat /etc/os-release:
[2026-03-14 19:32:20] NAME="CentOS Linux"
[2026-03-14 19:32:20] VERSION="7 (Core)"
[2026-03-14 19:32:20] ID="centos"
[2026-03-14 19:32:20] ID_LIKE="rhel fedora"
[2026-03-14 19:32:20] VERSION_ID="7"
[2026-03-14 19:32:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 19:32:20] ANSI_COLOR="0;31"
[2026-03-14 19:32:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 19:32:20] HOME_URL="https://www.centos.org/"
[2026-03-14 19:32:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 19:32:20] 
[2026-03-14 19:32:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 19:32:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 19:32:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 19:32:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 19:32:20] 
[2026-03-14 19:32:20] 2026-03-14 18:31:23,882 | INFO     | **************************************
[2026-03-14 19:32:20] 2026-03-14 18:31:24,385 | INFO     | executing command: df -mP /tmp/job_11309770/atlas/pilot/slots/0
[2026-03-14 19:32:20] 2026-03-14 18:31:24,390 | INFO     | sufficient remaining disk space (219492122624 B)
[2026-03-14 19:32:20] 2026-03-14 18:31:24,391 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 19:32:20] 2026-03-14 18:31:24,391 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 19:32:20] 2026-03-14 18:31:24,391 | INFO     | update_server=False
[2026-03-14 19:32:20] 2026-03-14 18:31:24,391 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 19:32:20] 2026-03-14 18:31:24,391 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-14 19:32:20] 2026-03-14 18:31:24,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 19:32:20] 2026-03-14 18:31:24,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 19:32:20] 2026-03-14 18:31:24,391 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 19:32:20] 2026-03-14 18:31:24,391 | INFO     | aborting loop
[2026-03-14 19:32:20] 2026-03-14 18:31:24,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 19:32:20] 2026-03-14 18:31:24,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 19:32:20] 2026-03-14 18:31:24,530 | INFO     | all data control threads have been joined
[2026-03-14 19:32:20] 2026-03-14 18:31:25,331 | INFO     | all payload control threads have been joined
[2026-03-14 19:32:20] 2026-03-14 18:31:25,332 | INFO     | all job control threads have been joined
[2026-03-14 19:32:20] 2026-03-14 18:31:25,393 | INFO     | [job] retrieve thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:25,396 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 19:32:20] 2026-03-14 18:31:25,396 | INFO     | [job] queue monitor thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:25,397 | INFO     | [job] job monitor thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:25,423 | INFO     | [payload] failed_post thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:25,535 | INFO     | [data] control thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:25,548 | INFO     | [data] copytool_in thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:25,846 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:25,883 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 19:32:20] 2026-03-14 18:31:26,002 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:26,318 | INFO     | [job] validate thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:26,336 | INFO     | [payload] control thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:26,337 | INFO     | [job] control thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:26,551 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:26,649 | INFO     | [payload] validate_post thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:26,702 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:27,401 | INFO     | [data] copytool_out thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:31:29,889 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 19:32:20] 2026-03-14 18:32:13,964 | INFO     | [monitor] cgroup control has ended
[2026-03-14 19:32:20] 2026-03-14 18:32:15,478 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-14 19:32:20] 2026-03-14 18:32:15,643 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 19:32:20] 2026-03-14 18:32:15,643 | INFO     | [monitor] control thread has ended
[2026-03-14 19:32:20] 2026-03-14 18:32:20,503 | INFO     | all workflow threads have been joined
[2026-03-14 19:32:20] 2026-03-14 18:32:20,503 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 19:32:20] 2026-03-14 18:32:20,503 | INFO     | traces error code: 0
[2026-03-14 19:32:20] 2026-03-14 18:32:20,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 19:32:20] 2026-03-14 18:32:20,552 [wrapper] ==== pilot stdout END ====
[2026-03-14 19:32:20] 2026-03-14 18:32:20,553 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 19:32:20] 2026-03-14 18:32:20,555 [wrapper] pilotpid: 4623
[2026-03-14 19:32:20] 2026-03-14 18:32:20,556 [wrapper] Pilot exit status: 0
[2026-03-14 19:32:20] 2026-03-14 18:32:20,559 [wrapper] pandaids: 7046436184
[2026-03-14 19:32:20] 2026-03-14 18:32:20,582 [wrapper] cleanup supervisor_pilot  5631 4624
[2026-03-14 19:32:20] 2026-03-14 18:32:20,584 [wrapper] Test setup, not cleaning
[2026-03-14 19:32:20] 2026-03-14 18:32:20,585 [wrapper] apfmon messages muted
[2026-03-14 19:32:20] 2026-03-14 18:32:20,586 [wrapper] ==== wrapper stdout END ====
[2026-03-14 19:32:20] 2026-03-14 18:32:20,587 [wrapper] ==== wrapper stderr END ====
[2026-03-14 19:32:20]  *** Error codes and diagnostics ***
[2026-03-14 19:32:20]     "exeErrorCode": 0,
[2026-03-14 19:32:20]     "exeErrorDiag": "",
[2026-03-14 19:32:20]     "pilotErrorCode": 0,
[2026-03-14 19:32:20]     "pilotErrorDiag": "",
[2026-03-14 19:32:20]  *** Listing of results directory ***
[2026-03-14 19:32:20] total 615228
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user    585013 Mar 14 10:39 pilot3.tar.gz
[2026-03-14 19:32:20] -rwx------ 1 mf493845 unix-user     36322 Mar 14 10:40 runpilot2-wrapper.sh
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user      5111 Mar 14 10:41 queuedata.json
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user       100 Mar 14 16:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 19:32:20] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 14 16:56 run_atlas
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user       105 Mar 14 16:56 job.xml
[2026-03-14 19:32:20] -rw-r--r-- 2 mf493845 unix-user 438809333 Mar 14 18:48 EVNT.46701403._002545.pool.root.1
[2026-03-14 19:32:20] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 14 18:48 start_atlas.sh
[2026-03-14 19:32:20] drwxrwx--x 2 mf493845 unix-user       100 Mar 14 18:48 shared
[2026-03-14 19:32:20] -rw-r--r-- 2 mf493845 unix-user    597533 Mar 14 18:48 input.tar.gz
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user      6390 Mar 14 18:48 init_data.xml
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user         0 Mar 14 18:48 boinc_setup_complete
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user      8192 Mar 14 18:48 boinc_mmap_file
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user         0 Mar 14 18:48 boinc_lockfile
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user      2572 Mar 14 18:48 pandaJob.out
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user   1005897 Mar 14 18:48 agis_schedconf.cvmfs.json
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user   1511579 Mar 14 18:48 agis_ddmendpoints.agis.ALL.json
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user       416 Mar 14 18:48 workernode_map.json
[2026-03-14 19:32:20] drwx------ 5 mf493845 unix-user       440 Mar 14 18:48 pilot3
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user        95 Mar 14 19:30 pilot_heartbeat.json
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user 185791251 Mar 14 19:30 HITS.48955015._024415.pool.root.1
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user      1014 Mar 14 19:31 memory_monitor_summary.json
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user    322837 Mar 14 19:31 log.48955015._024415.job.log.tgz.1
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user      6313 Mar 14 19:31 heartbeat.json
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user      4562 Mar 14 19:32 pilotlog.txt
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user    419466 Mar 14 19:32 log.48955015._024415.job.log.1
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user       357 Mar 14 19:32 output.list
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user       620 Mar 14 19:32 runtime_log
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user    757760 Mar 14 19:32 result.tar.gz
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user      9219 Mar 14 19:32 runtime_log.err
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user       641 Mar 14 19:32 hKNNDmZfaL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmropLDmTcEXkm.diag
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user     23288 Mar 14 19:32 stderr.txt
[2026-03-14 19:32:20] HITS file was successfully produced:
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user 185791251 Mar 14 19:30 shared/HITS.pool.root.1
[2026-03-14 19:32:20]  *** Contents of shared directory: ***
[2026-03-14 19:32:20] total 611308
[2026-03-14 19:32:20] -rw-r--r-- 2 mf493845 unix-user 438809333 Mar 14 18:48 ATLAS.root_0
[2026-03-14 19:32:20] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 14 18:48 start_atlas.sh
[2026-03-14 19:32:20] -rw-r--r-- 2 mf493845 unix-user    597533 Mar 14 18:48 input.tar.gz
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user 185791251 Mar 14 19:30 HITS.pool.root.1
[2026-03-14 19:32:20] -rw------- 1 mf493845 unix-user    757760 Mar 14 19:32 result.tar.gz
19:32:22 (29806): run_atlas exited; CPU time 18560.295430
19:32:22 (29806): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN