Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:40:19 (223922): wrapper (7.7.26015): starting
10:40:19 (223922): wrapper: running run_atlas (--nthreads 12)
[2026-03-14 10:40:19] Arguments: --nthreads 12
[2026-03-14 10:40:19] Threads: 12
[2026-03-14 10:40:19] Checking for CVMFS
[2026-03-14 10:40:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 10:40:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 10:40:20] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 10:40:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 10:40:23] 2.11.5.0 3857663 149038 340100 157285 0 14 27082497 45568000 31289 130560 0 874926728 99.812 500417472 17479 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2026-03-14 10:40:23] CVMFS is ok
[2026-03-14 10:40:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 10:40:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 10:40:23] Further information can be found at the LHC@home message board.
[2026-03-14 10:40:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 10:40:23] Checking for apptainer binary...
[2026-03-14 10:40:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 10:40:23] Running /usr/bin/apptainer --version
[2026-03-14 10:40:24] apptainer version 1.4.1-1.el9
[2026-03-14 10:40:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 10:40:25] wns0075.triumf.lcg
[2026-03-14 10:40:25] apptainer works
[2026-03-14 10:40:26] Set ATHENA_PROC_NUMBER=12
[2026-03-14 10:40:26] Set ATHENA_CORE_NUMBER=12
[2026-03-14 10:40:26] Starting ATLAS job with PandaID=7046917681
[2026-03-14 10:40:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 10:47:38]  *** The last 200 lines of the pilot log: ***
[2026-03-14 10:47:38] 2026-03-14 17:47:02,464 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | WARNING  | wrong length of table data, x=[1773510253.0], y=[1905.0] (must be same and length>=4)
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | INFO     | could have reported an average CPU frequency of 1449 MHz (4 samples)
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | INFO     | ..............................
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | INFO     | . Timing measurements:
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | INFO     | . get job = 1 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . initial setup = 52 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . payload setup = 49 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . stage-in = 1 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . payload execution = 89 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . stage-out = 1 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . log creation = 0 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | ..............................
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7046917681/pilotlog.txt
[2026-03-14 10:47:38] 2026-03-14 17:47:02,584 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-03-14 10:47:38] - Log from pilotlog.txt -
[2026-03-14 10:47:38] 2026-03-14 17:47:02,459 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7046917681/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 10:47:38] 2026-03-14 17:47:02,464 | INFO     | extracted standard info from prmon json
[2026-03-14 10:47:38] 2026-03-14 17:47:02,464 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 10:47:38] 2026-03-14 17:47:02,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 10:47:38] 2026-03-14 17:47:02,464 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 10:47:38] 2026-03-14 17:47:02,464 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | WARNING  | wrong length of table data, x=[1773510253.0], y=[1905.0] (must be same and length>=4)
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | INFO     | could have reported an average CPU frequency of 1449 MHz (4 samples)
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | INFO     | ..............................
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | INFO     | . Timing measurements:
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | INFO     | . get job = 1 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . initial setup = 52 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . payload setup = 49 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . stage-in = 1 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . payload execution = 89 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . stage-out = 1 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . log creation = 0 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | ..............................
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7046917681/pilotlog.txt
[2026-03-14 10:47:38] 2026-03-14 17:47:02,584 | WARNING  | 
[2026-03-14 10:47:38] [begin log extracts]
[2026-03-14 10:47:38] - Log from pilotlog.txt -
[2026-03-14 10:47:38] 2026-03-14 17:47:02,459 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7046917681/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 10:47:38] 2026-03-14 17:47:02,464 | INFO     | extracted standard info from prmon json
[2026-03-14 10:47:38] 2026-03-14 17:47:02,464 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 10:47:38] 2026-03-14 17:47:02,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 10:47:38] 2026-03-14 17:47:02,464 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 10:47:38] 2026-03-14 17:47:02,464 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | WARNING  | wrong length of table data, x=[1773510253.0], y=[1905.0] (must be same and length>=4)
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | INFO     | could have reported an average CPU frequency of 1449 MHz (4 samples)
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | INFO     | ..............................
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | INFO     | . Timing measurements:
[2026-03-14 10:47:38] 2026-03-14 17:47:02,465 | INFO     | . get job = 1 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . initial setup = 52 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . payload setup = 49 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . stage-in = 1 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . payload execution = 89 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . stage-out = 1 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | . log creation = 0 s
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | ..............................
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-14 10:47:38] 2026-03-14 17:47:02,466 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7046917681/pilotlog.txt
[2026-03-14 10:47:38] [end log extracts]
[2026-03-14 10:47:38] 2026-03-14 17:47:02,584 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-03-14 10:47:38] 2026-03-14 17:47:02,585 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-03-14 10:47:38] 2026-03-14 17:47:03,190 | INFO     | 
[2026-03-14 10:47:38] 2026-03-14 17:47:03,190 | INFO     | job summary report
[2026-03-14 10:47:38] 2026-03-14 17:47:03,190 | INFO     | --------------------------------------------------
[2026-03-14 10:47:38] 2026-03-14 17:47:03,191 | INFO     | PanDA job id: 7046917681
[2026-03-14 10:47:38] 2026-03-14 17:47:03,191 | INFO     | task id: 48955010
[2026-03-14 10:47:38] 2026-03-14 17:47:03,191 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-03-14 10:44:47,009 CRITICAL Transform executor raised TransformValidationExceptio
[2026-03-14 10:47:38] 2026-03-14 17:47:03,191 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 10:47:38] 2026-03-14 17:47:03,191 | INFO     | pilot state: failed 
[2026-03-14 10:47:38] 2026-03-14 17:47:03,191 | INFO     | transexitcode: 65
[2026-03-14 10:47:38] 2026-03-14 17:47:03,191 | INFO     | exeerrorcode: 65
[2026-03-14 10:47:38] 2026-03-14 17:47:03,191 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-03-14 10:47:38] 2026-03-14 17:47:03,191 | INFO     | exitcode: 65
[2026-03-14 10:47:38] 2026-03-14 17:47:03,191 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-03-14 10:47:38] 2026-03-14 17:47:03,191 | INFO     | cpuconsumptiontime: 23 s
[2026-03-14 10:47:38] 2026-03-14 17:47:03,192 | INFO     | nevents: 0
[2026-03-14 10:47:38] 2026-03-14 17:47:03,192 | INFO     | neventsw: 0
[2026-03-14 10:47:38] 2026-03-14 17:47:03,192 | INFO     | pid: 233515
[2026-03-14 10:47:38] 2026-03-14 17:47:03,192 | INFO     | pgrp: 233515
[2026-03-14 10:47:38] 2026-03-14 17:47:03,192 | INFO     | corecount: 12
[2026-03-14 10:47:38] 2026-03-14 17:47:03,241 | INFO     | event service: False
[2026-03-14 10:47:38] 2026-03-14 17:47:03,241 | INFO     | sizes: {0: 2279091, 1: 2279689, 2: 2279773, 3: 2279801, 5: 2279801, 6: 2280446, 143: 2303689, 144: 2303665, 146: 2307985, 149: 2308013, 268: 2308179}
[2026-03-14 10:47:38] 2026-03-14 17:47:03,241 | INFO     | --------------------------------------------------
[2026-03-14 10:47:38] 2026-03-14 17:47:03,242 | INFO     | 
[2026-03-14 10:47:38] 2026-03-14 17:47:03,242 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-03-14 10:47:38] 2026-03-14 17:47:03,241 | INFO     | PID=228399 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 10:47:38] 2026-03-14 17:47:03,256 | INFO     | .. there are 49 such processes running
[2026-03-14 10:47:38] 2026-03-14 17:47:03,315 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,316 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,316 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,316 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,316 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,316 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,316 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,316 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,316 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,316 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,316 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,317 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,317 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,317 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,317 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,317 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,317 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,317 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 10:47:38] 2026-03-14 17:47:03,317 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,317 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 10:47:38] 2026-03-14 17:47:03,318 | INFO     | job 7046917681 has completed (purged errors)
[2026-03-14 10:47:38] 2026-03-14 17:47:03,318 | INFO     | overall cleanup function is called
[2026-03-14 10:47:38] 2026-03-14 17:47:04,335 | INFO     | --- collectZombieJob: --- 10, [233515]
[2026-03-14 10:47:38] 2026-03-14 17:47:04,335 | INFO     | zombie collector waiting for pid 233515
[2026-03-14 10:47:38] 2026-03-14 17:47:04,335 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 10:47:38] 2026-03-14 17:47:04,336 | INFO     | collected zombie processes
[2026-03-14 10:47:38] 2026-03-14 17:47:04,336 | INFO     | will attempt to kill all subprocesses of pid=233515
[2026-03-14 10:47:38] 2026-03-14 17:47:05,388 | INFO     | process IDs to be killed: [233515] (in reverse order)
[2026-03-14 10:47:38] 2026-03-14 17:47:05,714 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 10:47:38] 2026-03-14 17:47:05,714 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 10:47:38] 2026-03-14 17:47:05,750 | INFO     | did not find any defunct processes belonging to 233515
[2026-03-14 10:47:38] 2026-03-14 17:47:05,776 | INFO     | did not find any defunct processes belonging to 233515
[2026-03-14 10:47:38] 2026-03-14 17:47:05,777 | INFO     | ready for new job
[2026-03-14 10:47:38] 2026-03-14 17:47:05,817 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 10:47:38] 2026-03-14 17:47:05,819 | INFO     | **************************************
[2026-03-14 10:47:38] 2026-03-14 17:47:05,819 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 10:47:38] 2026-03-14 17:47:05,819 | INFO     | **************************************
[2026-03-14 10:47:38] 2026-03-14 17:47:05,819 | INFO     | 
[2026-03-14 10:47:38] 2026-03-14 17:47:05,871 | INFO     | architecture information:
[2026-03-14 10:47:38] 2026-03-14 17:47:05,875 | INFO     | executing command: cat /etc/os-release
[2026-03-14 10:47:38] 2026-03-14 17:47:05,951 | INFO     | cat /etc/os-release:
[2026-03-14 10:47:38] NAME="CentOS Linux"
[2026-03-14 10:47:38] VERSION="7 (Core)"
[2026-03-14 10:47:38] ID="centos"
[2026-03-14 10:47:38] ID_LIKE="rhel fedora"
[2026-03-14 10:47:38] VERSION_ID="7"
[2026-03-14 10:47:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 10:47:38] ANSI_COLOR="0;31"
[2026-03-14 10:47:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 10:47:38] HOME_URL="https://www.centos.org/"
[2026-03-14 10:47:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 10:47:38] 
[2026-03-14 10:47:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 10:47:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 10:47:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 10:47:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 10:47:38] 
[2026-03-14 10:47:38] 2026-03-14 17:47:05,952 | INFO     | **************************************
[2026-03-14 10:47:38] 2026-03-14 17:47:06,455 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-03-14 10:47:38] 2026-03-14 17:47:06,615 | INFO     | sufficient remaining disk space (2044297478144 B)
[2026-03-14 10:47:38] 2026-03-14 17:47:06,615 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 10:47:38] 2026-03-14 17:47:06,615 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 10:47:38] 2026-03-14 17:47:06,615 | INFO     | update_server=False
[2026-03-14 10:47:38] 2026-03-14 17:47:06,616 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 10:47:38] 2026-03-14 17:47:07,036 | INFO     | all payload control threads have been joined
[2026-03-14 10:47:38] 2026-03-14 17:47:07,199 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 10:47:38] 2026-03-14 17:47:07,217 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 10:47:38] 2026-03-14 17:47:07,217 | INFO     | aborting loop
[2026-03-14 10:47:38] 2026-03-14 17:47:07,235 | INFO     | all job control threads have been joined
[2026-03-14 10:47:38] 2026-03-14 17:47:07,262 | INFO     | all data control threads have been joined
[2026-03-14 10:47:38] 2026-03-14 17:47:07,621 | INFO     | [job] retrieve thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:07,924 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 10:47:38] 2026-03-14 17:47:08,042 | INFO     | [payload] control thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:08,223 | INFO     | [job] job monitor thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:08,229 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 10:47:38] 2026-03-14 17:47:08,241 | INFO     | [job] control thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:08,274 | INFO     | [data] control thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:08,279 | INFO     | [job] validate thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:08,280 | INFO     | [data] copytool_in thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:08,283 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:08,327 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:08,785 | INFO     | [payload] failed_post thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:08,805 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:09,073 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:09,206 | INFO     | [data] copytool_out thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:09,211 | INFO     | [payload] validate_post thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:09,235 | INFO     | [job] queue monitor thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:11,933 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 10:47:38] 2026-03-14 17:47:27,398 | INFO     | [monitor] cgroup control has ended
[2026-03-14 10:47:38] 2026-03-14 17:47:28,378 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140351602698048)>', '<ExcThread(monitor, started 140351033550592)>']
[2026-03-14 10:47:38] 2026-03-14 17:47:33,404 | INFO     | all workflow threads have been joined
[2026-03-14 10:47:38] 2026-03-14 17:47:33,404 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 10:47:38] 2026-03-14 17:47:33,405 | INFO     | traces error code: 0
[2026-03-14 10:47:38] 2026-03-14 17:47:33,405 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 10:47:38] 2026-03-14 17:47:35,941 | INFO     | PID=228399 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 10:47:38] 2026-03-14 17:47:35,941 | INFO     | .. there are 49 such processes running
[2026-03-14 10:47:38] 2026-03-14 17:47:35,941 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 10:47:38] 2026-03-14 17:47:35,941 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 10:47:38] 2026-03-14 17:47:35,941 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 10:47:38] 2026-03-14 17:47:35,941 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 10:47:38] 2026-03-14 17:47:35,942 | INFO     | [monitor] control thread has ended
[2026-03-14 10:47:38] 2026-03-14 17:47:36,751 [wrapper] ==== pilot stdout END ====
[2026-03-14 10:47:38] 2026-03-14 17:47:36,763 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 10:47:38] 2026-03-14 17:47:36,787 [wrapper] pilotpid: 228399
[2026-03-14 10:47:38] 2026-03-14 17:47:36,813 [wrapper] Pilot exit status: 0
[2026-03-14 10:47:38] 2026-03-14 17:47:36,947 [wrapper] pandaids: 7046917681
[2026-03-14 10:47:38] 2026-03-14 17:47:37,350 [wrapper] cleanup supervisor_pilot  228411 228400
[2026-03-14 10:47:38] 2026-03-14 17:47:37,373 [wrapper] Test setup, not cleaning
[2026-03-14 10:47:38] 2026-03-14 17:47:37,413 [wrapper] apfmon messages muted
[2026-03-14 10:47:38] 2026-03-14 17:47:37,448 [wrapper] ==== wrapper stdout END ====
[2026-03-14 10:47:38] 2026-03-14 17:47:37,484 [wrapper] ==== wrapper stderr END ====
[2026-03-14 10:47:38]  *** Error codes and diagnostics ***
[2026-03-14 10:47:38]     "exeErrorCode": 65,
[2026-03-14 10:47:38]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-03-14 10:47:38]     "pilotErrorCode": 1305,
[2026-03-14 10:47:38]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-03-14 10:47:38]  *** Listing of results directory ***
[2026-03-14 10:47:38] total 431292
[2026-03-14 10:47:38] -rw-r--r--. 1 boinc boinc    585013 Mar 14 06:10 pilot3.tar.gz
[2026-03-14 10:47:38] -rwx------. 1 boinc boinc     36322 Mar 14 06:13 runpilot2-wrapper.sh
[2026-03-14 10:47:38] -rw-r--r--. 1 boinc boinc      5111 Mar 14 06:18 queuedata.json
[2026-03-14 10:47:38] -rw-r--r--. 1 boinc boinc       100 Mar 14 10:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 10:47:38] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 10:40 run_atlas
[2026-03-14 10:47:38] -rw-r--r--. 1 boinc boinc       105 Mar 14 10:40 job.xml
[2026-03-14 10:47:38] -rw-r--r--. 1 boinc boinc      6593 Mar 14 10:40 init_data.xml
[2026-03-14 10:47:38] -rw-r--r--. 2 boinc boinc 437484995 Mar 14 10:40 EVNT.46701403._001916.pool.root.1
[2026-03-14 10:47:38] -rw-r--r--. 2 boinc boinc     15845 Mar 14 10:40 start_atlas.sh
[2026-03-14 10:47:38] drwxrwx--x. 2 boinc boinc      4096 Mar 14 10:40 shared
[2026-03-14 10:47:38] -rw-r--r--. 2 boinc boinc    597529 Mar 14 10:40 input.tar.gz
[2026-03-14 10:47:38] -rw-r--r--. 1 boinc boinc         0 Mar 14 10:40 boinc_lockfile
[2026-03-14 10:47:38] -rw-r--r--. 1 boinc boinc      2564 Mar 14 10:40 pandaJob.out
[2026-03-14 10:47:38] -rw-------. 1 boinc boinc   1005897 Mar 14 10:41 agis_schedconf.cvmfs.json
[2026-03-14 10:47:38] -rw-------. 1 boinc boinc   1511579 Mar 14 10:41 agis_ddmendpoints.agis.ALL.json
[2026-03-14 10:47:38] -rw-------. 1 boinc boinc       445 Mar 14 10:42 workernode_map.json
[2026-03-14 10:47:38] drwx------. 5 boinc boinc      4096 Mar 14 10:42 pilot3
[2026-03-14 10:47:38] -rw-r--r--. 1 boinc boinc       525 Mar 14 10:44 boinc_task_state.xml
[2026-03-14 10:47:38] -rw-------. 1 boinc boinc       961 Mar 14 10:44 memory_monitor_summary.json
[2026-03-14 10:47:38] -rw-------. 1 boinc boinc     22409 Mar 14 10:44 log.48955010._044757.job.log.tgz.1
[2026-03-14 10:47:38] -rw-------. 1 boinc boinc        95 Mar 14 10:46 pilot_heartbeat.json
[2026-03-14 10:47:38] -rw-------. 1 boinc boinc      7025 Mar 14 10:47 heartbeat.json
[2026-03-14 10:47:38] -rw-------. 1 boinc boinc       822 Mar 14 10:47 pilotlog.txt
[2026-03-14 10:47:38] -rw-r--r--. 1 boinc boinc      8192 Mar 14 10:47 boinc_mmap_file
[2026-03-14 10:47:38] -rw-r--r--. 1 boinc boinc        23 Mar 14 10:47 wrapper_checkpoint.txt
[2026-03-14 10:47:38] -rw-------. 1 boinc boinc     91972 Mar 14 10:47 log.48955010._044757.job.log.1
[2026-03-14 10:47:38] -rw-------. 1 boinc boinc       188 Mar 14 10:47 output.list
[2026-03-14 10:47:38] -rw-r--r--. 1 boinc boinc       620 Mar 14 10:47 runtime_log
[2026-03-14 10:47:38] -rw-------. 1 boinc boinc    133120 Mar 14 10:47 result.tar.gz
[2026-03-14 10:47:38] -rw-------. 1 boinc boinc       646 Mar 14 10:47 yLXNDmHzdL9n9Rq4apOajLDm4fhM0noT9bVooX4SDm9VqLDmsyxlLo.diag
[2026-03-14 10:47:38] -rw-r--r--. 1 boinc boinc      8635 Mar 14 10:47 runtime_log.err
[2026-03-14 10:47:38] -rw-r--r--. 1 boinc boinc     21940 Mar 14 10:47 stderr.txt
[2026-03-14 10:47:38] No HITS result produced
[2026-03-14 10:47:38]  *** Contents of shared directory: ***
[2026-03-14 10:47:38] total 427968
[2026-03-14 10:47:38] -rw-r--r--. 2 boinc boinc 437484995 Mar 14 10:40 ATLAS.root_0
[2026-03-14 10:47:38] -rw-r--r--. 2 boinc boinc     15845 Mar 14 10:40 start_atlas.sh
[2026-03-14 10:47:38] -rw-r--r--. 2 boinc boinc    597529 Mar 14 10:40 input.tar.gz
[2026-03-14 10:47:38] -rw-------. 1 boinc boinc    133120 Mar 14 10:47 result.tar.gz
10:47:40 (223922): run_atlas exited; CPU time 39.272329
10:47:40 (223922): called boinc_finish(0)

</stderr_txt>
]]>

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